Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01006789001 Vitis vinifera HOM05D005888 ORTHO05D007791 3.9e-81 304.7 148 100.0
GSVIVG01033117001 Vitis vinifera HOM05D005888 ORTHO05D441076 6.0e-21 104.8 52 90.4
Sabra16G0212900 Salix brachista HOM05D005888 ORTHO05D007791 2.0e-16 89.7 87 56.3
ClCG05G013410 Citrullus lanatus HOM05D005888 ORTHO05D007791 2.4e-14 82.8 82 57.3
GSVIVG01033109001 Vitis vinifera HOM05D005888 ORTHO05D007791 5.4e-14 81.6 78 60.3
Atru.chr6.2546 Acer truncatum HOM05D005888 ORTHO05D007791 7.1e-14 81.3 82 54.9
Atru.chr6.2554 Acer truncatum HOM05D005888 ORTHO05D007791 7.1e-14 81.3 82 54.9
arahy.Tifrunner.gnm1.ann1.BEVL6N Arachis hypogaea HOM05D005888 ORTHO05D007791 7.1e-14 81.3 80 57.5
Ciclev10014957m.g Citrus clementina HOM05D005888 ORTHO05D007791 1.2e-13 80.5 78 57.7
Potri.001G331900 Populus trichocarpa HOM05D005888 ORTHO05D007791 2.7e-13 79.3 78 57.7
PGR083G0577 Punica granatum HOM05D005888 ORTHO05D007791 4.6e-13 78.6 78 56.4
QL02p071659 Quercus lobata HOM05D005888 ORTHO05D007791 4.6e-13 78.6 78 57.7
arahy.Tifrunner.gnm1.ann1.269ICV Arachis hypogaea HOM05D005888 ORTHO05D007791 6.0e-13 78.2 80 56.2
CiPaw.03G054300 Carya illinoinensis HOM05D005888 ORTHO05D007791 6.0e-13 78.2 78 56.4
MELO3C014874.2 Cucumis melo HOM05D005888 ORTHO05D007791 1.0e-12 77.4 78 56.4
CsaV3_3G027150 Cucumis sativus L. HOM05D005888 ORTHO05D007791 1.0e-12 77.4 78 56.4
Ca_11801_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 1.3e-12 77.0 76 57.9
Psat3g164600 Pisum sativum HOM05D005888 ORTHO05D007791 1.3e-12 77.0 78 57.7
FAN05G4989 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.7e-12 76.6 83 54.2
PSO063G1934 Papaver somniferum HOM05D005888 ORTHO05D007791 1.7e-12 76.6 78 55.1
PSO782G2046 Papaver somniferum HOM05D005888 ORTHO05D007791 1.7e-12 76.6 78 55.1
VMungo1383G0859 Vigna mungo HOM05D005888 ORTHO05D007791 1.7e-12 76.6 78 57.7
Duzib187G0894 Durio zibethinus HOM05D005888 ORTHO05D007791 2.3e-12 76.3 90 48.9
FAN02G1540 Fragaria x ananassa HOM05D005888 ORTHO05D007791 2.3e-12 76.3 80 55.0
HanXRQChr14g0450691 Helianthus annuus HOM05D005888 ORTHO05D007791 2.3e-12 76.3 81 53.1
Eucgr.J02331 Eucalyptus grandis HOM05D005888 ORTHO05D007791 3.0e-12 75.9 78 55.1
SalBow7G4553 Salvia bowleyana HOM05D005888 ORTHO05D007791 3.0e-12 75.9 78 53.8
Sed0023439 Sechium edule HOM05D005888 ORTHO05D007791 3.0e-12 75.9 78 56.4
SGA_v2.0_scaffold47G17585 Striga asiatica HOM05D005888 ORTHO05D000781 3.0e-12 75.9 78 53.8
Rhsim10G0007200 Rhododendron simsii HOM05D005888 ORTHO05D007791 3.9e-12 75.5 81 55.6
ATR0561G016 Amborella trichopoda HOM05D005888 ORTHO05D007791 6.6e-12 74.7 78 53.8
COL.COLO4_17186 Corchorus olitorius HOM05D005888 ORTHO05D007791 6.6e-12 74.7 78 55.1
Dinv33348 Davidia involucrata HOM05D005888 ORTHO05D007791 6.6e-12 74.7 78 56.4
ECA238G1812 Erigeron canadensis HOM05D005888 ORTHO05D001226 6.6e-12 74.7 80 53.8
Gohir.D10G084400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 6.6e-12 74.7 78 55.1
Gorai.011G091800 Gossypium raimondii HOM05D005888 ORTHO05D007791 6.6e-12 74.7 78 55.1
Nn4g22357 Nelumbo nucifera HOM05D005888 ORTHO05D007791 8.6e-12 74.3 83 53.0
Aqoxy5G03414 Aquilegia oxysepala HOM05D005888 ORTHO05D007791 1.1e-11 73.9 78 53.8
EL10Ac5g11325 Beta vulgaris HOM05D005888 ORTHO05D007791 1.1e-11 73.9 78 52.6
CDE05G3258 Ceratophyllum demersum HOM05D005888 ORTHO05D007791 1.1e-11 73.9 82 47.6
Gohir.A10G159400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 1.1e-11 73.9 78 53.8
RcHm_v2.0_Chr2g0175381 Rosa chinensis HOM05D005888 ORTHO05D007791 1.1e-11 73.9 78 55.1
A06p41440 Brassica napus HOM05D005888 ORTHO05D007791 1.5e-11 73.6 80 53.8
C07p36200 Brassica napus HOM05D005888 ORTHO05D007791 1.5e-11 73.6 80 53.8
BolC7t44136H Brassica oleracea HOM05D005888 ORTHO05D007791 1.5e-11 73.6 80 53.8
BraA06t27070Z Brassica rapa HOM05D005888 ORTHO05D007791 1.5e-11 73.6 80 53.8
CANSAT64G1138 Cannabis sativa HOM05D005888 ORTHO05D007791 1.5e-11 73.6 78 52.6
AUR62009505 Chenopodium quinoa HOM05D005888 ORTHO05D007791 1.5e-11 73.6 90 46.7
Hma1.2p1_0279F.1_g112640 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 1.5e-11 73.6 78 56.4
Hma1.2p1_0279F.1_g112650 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 1.5e-11 73.6 78 56.4
Lju41C52T2 Lonicera japonica HOM05D005888 ORTHO05D007791 1.5e-11 73.6 76 56.6
Lalb_Chr22g0360441 Lupinus albus HOM05D005888 ORTHO05D007791 1.5e-11 73.6 78 53.8
MD09G1012500 Malus domestica HOM05D005888 ORTHO05D007791 1.5e-11 73.6 78 55.1
TPR.G38314 Trifolium pratense HOM05D005888 ORTHO05D007791 1.5e-11 73.6 78 55.1
Medtr7g029350 Medicago truncatula HOM05D005888 ORTHO05D007791 1.9e-11 73.2 78 55.1
AUR62044347 Chenopodium quinoa HOM05D005888 ORTHO05D007791 2.5e-11 72.8 88 46.6
Phvul.001G094800 Phaseolus vulgaris HOM05D005888 ORTHO05D007791 2.5e-11 72.8 78 55.1
TWI36G1634 Tripterygium wilfordii HOM05D005888 ORTHO05D007791 2.5e-11 72.8 78 53.8
FvH4_6g53250 Fragaria vesca HOM05D005888 ORTHO05D007791 3.3e-11 72.4 78 53.8
Thecc.04G034400 Theobroma cacao HOM05D005888 ORTHO05D007791 3.3e-11 72.4 78 53.8
Actinidia36191 Actinidia chinensis HOM05D005888 ORTHO05D007791 4.3e-11 72.0 78 52.6
AUR62034780 Chenopodium quinoa HOM05D005888 ORTHO05D007791 4.3e-11 72.0 78 52.6
Manes.15G159600 Manihot esculenta HOM05D005888 ORTHO05D007791 4.3e-11 72.0 78 53.8
Oeu011755.2 Olea europaea HOM05D005888 ORTHO05D007791 4.3e-11 72.0 78 55.1
MSTRG.15566 Avicennia marina HOM05D005888 ORTHO05D007791 5.6e-11 71.6 78 53.8
vmacro05950 Vaccinium macrocarpon HOM05D005888 ORTHO05D007791 5.6e-11 71.6 79 51.9
Glyma.16G057700 Glycine max HOM05D005888 ORTHO05D007791 7.3e-11 71.2 78 53.8
Prupe.3G304500 Prunus persica HOM05D005888 ORTHO05D007791 7.3e-11 71.2 78 52.6
PGSC0003DMG400013424 Solanum tuberosum HOM05D005888 ORTHO05D007791 7.3e-11 71.2 78 53.8
TAR374G0091 Trochodendron aralioides HOM05D005888 ORTHO05D007791 7.3e-11 71.2 78 52.6
Lj1g0026523 Lotus japonicus HOM05D005888 ORTHO05D007791 9.5e-11 70.9 78 52.6
CAN.G1751.4 Capsicum annuum HOM05D005888 ORTHO05D007791 1.2e-10 70.5 78 53.8
DCAR_021782 Daucus carota HOM05D005888 ORTHO05D007791 1.2e-10 70.5 78 52.6
Migut.K01458 Erythranthe guttata HOM05D005888 ORTHO05D007791 1.2e-10 70.5 78 51.3
Peaxi162Scf00700g00115 Petunia axillaris HOM05D005888 ORTHO05D007791 1.2e-10 70.5 78 53.8
Solyc03g005010.4 Solanum lycopersicum HOM05D005888 ORTHO05D007791 1.6e-10 70.1 78 52.6
Sopen03g001020 Solanum pennellii HOM05D005888 ORTHO05D007791 1.6e-10 70.1 78 52.6
AL5G16294 Arabidopsis lyrata HOM05D005888 ORTHO05D007791 2.8e-10 69.3 76 52.6
AT3G27180 Arabidopsis thaliana HOM05D005888 ORTHO05D007791 2.8e-10 69.3 76 52.6
Carub.0005s0545 Capsella rubella HOM05D005888 ORTHO05D007791 2.8e-10 69.3 76 52.6
CARHR148380 Cardamine hirsuta HOM05D005888 ORTHO05D007791 2.8e-10 69.3 76 52.6
HPP92_006968 Vanilla planifolia HOM05D005888 ORTHO05D007791 2.8e-10 69.3 77 50.6
Actinidia05914 Actinidia chinensis HOM05D005888 ORTHO05D007791 3.6e-10 68.9 78 52.6
Cc07_g00720 Coffea canephora HOM05D005888 ORTHO05D007791 3.6e-10 68.9 78 50.0
Thhalv10003965m.g Eutrema salsugineum HOM05D005888 ORTHO05D007791 6.2e-10 68.2 76 51.3
Nitab4.5_0000559g0440 Nicotiana tabacum HOM05D005888 ORTHO05D007791 6.2e-10 68.2 78 52.6
Os01g0920300 Oryza sativa ssp. japonica HOM05D005888 ORTHO05D007791 6.2e-10 68.2 78 47.4
Sp2g16300 Schrenkiella parvula HOM05D005888 ORTHO05D007791 8.1e-10 67.8 76 51.3
Sc03g0006610 Simmondsia chinensis HOM05D005888 ORTHO05D007791 8.1e-10 67.8 78 51.3
Lsat_1_v5_gn_2_94140 Lactuca sativa HOM05D005888 ORTHO05D007791 3.1e-09 65.9 87 44.8
THA.LOC104823976 Tarenaya hassleriana HOM05D005888 ORTHO05D007791 6.8e-09 64.7 76 51.3
Zm00001eb364480 Zea mays HOM05D005888 ORTHO05D007791 1.2e-08 63.9 78 46.2
Aa31LG2G5450 Aethionema arabicum HOM05D005888 ORTHO05D007791 2.0e-08 63.2 70 51.4
Cpa.g.sc171.27 Carica papaya HOM05D005888 ORTHO05D007791 9.9e-08 60.8 65 50.8
GSVIVG01006693001 Vitis vinifera HOM05D005888 ORTHO05D439445 1.4e-06 57.0 46 65.2
Pp3c10_19430 Physcomitrium patens HOM05D005888 ORTHO05D007791 2.4e-06 56.2 80 42.5


User provided reference genes

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