Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01006775001 Vitis vinifera HOM05D007867 ORTHO05D009953 6.1e-18 93.6 66 100.0
Manes.13G104200 Manihot esculenta HOM05D007867 ORTHO05D009953 2.3e-17 91.7 66 98.5
Nn5g29770 Nelumbo nucifera HOM05D007867 ORTHO05D009953 2.3e-17 91.7 66 98.5
Gohir.D03G034400 Gossypium hirsutum HOM05D007867 ORTHO05D009953 3.0e-17 91.3 66 97.0
Gorai.003G036100 Gossypium raimondii HOM05D007867 ORTHO05D009953 3.0e-17 91.3 66 97.0
CiPaw.07G042200 Carya illinoinensis HOM05D007867 ORTHO05D009953 8.9e-17 89.7 66 97.0
Gohir.A11G209001 Gossypium hirsutum HOM05D007867 ORTHO05D009953 1.5e-16 89.0 66 84.8
Nn1g05680 Nelumbo nucifera HOM05D007867 ORTHO05D009953 1.5e-16 89.0 66 83.3
Thecc.01G083600 Theobroma cacao HOM05D007867 ORTHO05D009953 1.5e-16 89.0 66 81.8
Zm00001eb061250 Zea mays HOM05D007867 ORTHO05D009953 6.3e-15 83.6 70 81.4
Actinidia36378 Actinidia chinensis HOM05D007867 ORTHO05D009953 1.4e-14 82.4 67 64.2
ATR0800G156 Amborella trichopoda HOM05D007867 ORTHO05D009953 1.4e-14 82.4 66 81.8
Sc03g0000590 Simmondsia chinensis HOM05D007867 ORTHO05D009953 1.4e-14 82.4 71 76.1
Dinv36978 Davidia involucrata HOM05D007867 ORTHO05D009953 5.4e-14 80.5 69 73.9
CiPaw.08G145800 Carya illinoinensis HOM05D007867 ORTHO05D009953 9.2e-14 79.7 65 76.9
Lalb_Chr09g0325761 Lupinus albus HOM05D007867 ORTHO05D009953 1.6e-13 79.0 66 74.2
Sed0014306 Sechium edule HOM05D007867 ORTHO05D009953 5.9e-13 77.0 64 76.6
Cc07_g07830 Coffea canephora HOM05D007867 ORTHO05D009953 7.8e-13 76.6 70 88.6
Gohir.D11G214500 Gossypium hirsutum HOM05D007867 ORTHO05D009953 7.8e-13 76.6 66 77.3
RcHm_v2.0_Chr2g0109971 Rosa chinensis HOM05D007867 ORTHO05D009953 7.8e-13 76.6 67 73.1
MD10G1057100 Malus domestica HOM05D007867 ORTHO05D009953 1.0e-12 76.3 68 77.9
FvH4_1g18950 Fragaria vesca HOM05D007867 ORTHO05D009953 1.3e-12 75.9 69 71.0
vmacro19595 Vaccinium macrocarpon HOM05D007867 ORTHO05D009953 2.3e-12 75.1 66 77.3
CiPaw.05G026800 Carya illinoinensis HOM05D007867 ORTHO05D009953 3.9e-12 74.3 64 78.1
Haze_03934 Corylus avellana HOM05D007867 ORTHO05D009953 5.0e-12 73.9 66 87.9
Gorai.007G230100 Gossypium raimondii HOM05D007867 ORTHO05D009953 5.0e-12 73.9 66 87.9
Ca_13472_v3 Cicer arietinum L. HOM05D007867 ORTHO05D009953 6.6e-12 73.6 68 80.9
Medtr5g030870 Medicago truncatula HOM05D007867 ORTHO05D009953 3.3e-11 71.2 65 87.7
Cc02_g20570 Coffea canephora HOM05D007867 ORTHO05D009953 4.3e-11 70.9 66 81.8
CSS0005733 Camellia sinensis var. sinensis HOM05D007867 ORTHO05D009953 7.3e-11 70.1 42 78.6
Cpa.g.c33237.1 Carica papaya HOM05D007867 ORTHO05D009953 7.3e-11 70.1 66 83.3
Os07g0191650 Oryza sativa ssp. japonica HOM05D007867 ORTHO05D009953 1.2e-10 69.3 78 69.2
Gohir.A02G146200 Gossypium hirsutum HOM05D007867 ORTHO05D009953 2.8e-10 68.2 66 83.3
Hma1.2p1_1119F.1_g259180 Hydrangea macrophylla HOM05D007867 ORTHO05D009953 3.6e-10 67.8 45 84.4
EL10Ac9g22129 Beta vulgaris HOM05D007867 ORTHO05D009953 4.7e-10 67.4 73 69.9
CiPaw.08G145600 Carya illinoinensis HOM05D007867 ORTHO05D009953 4.7e-10 67.4 68 69.1
Ciclev10027423m.g Citrus clementina HOM05D007867 ORTHO05D009953 4.7e-10 67.4 67 83.6
Glyma.09G202700 Glycine max HOM05D007867 ORTHO05D009953 4.7e-10 67.4 66 78.8
Potri.015G025600 Populus trichocarpa HOM05D007867 ORTHO05D009953 2.3e-09 65.1 64 65.6
CiPaw.08G128500 Carya illinoinensis HOM05D007867 ORTHO05D009953 3.1e-09 64.7 67 62.7
MBI16_g26237_MAGBIO Magnolia biondii HOM05D007867 ORTHO05D009953 3.1e-09 64.7 66 81.8
RhsimUnG0066800 Rhododendron simsii HOM05D007867 ORTHO05D009953 3.1e-09 64.7 77 48.1
Lj2g0008804 Lotus japonicus HOM05D007867 ORTHO05D009953 4.0e-09 64.3 70 65.7
Gohir.A05G401300 Gossypium hirsutum HOM05D007867 ORTHO05D009953 6.8e-09 63.5 75 57.3
Oeu033792.2 Olea europaea HOM05D007867 ORTHO05D009953 6.8e-09 63.5 38 76.3
TPR.G40500 Trifolium pratense HOM05D007867 ORTHO05D009953 6.8e-09 63.5 27 100.0
Hund00401 Selenicereus undatus HOM05D007867 ORTHO05D009953 1.2e-08 62.8 70 71.4
FAN28G0366 Fragaria x ananassa HOM05D007867 ORTHO05D009953 2.0e-08 62.0 46 69.6
Lalb_Chr16g0383101 Lupinus albus HOM05D007867 ORTHO05D009953 5.8e-08 60.5 46 69.6
Potri.015G025700 Populus trichocarpa HOM05D007867 ORTHO05D009953 5.8e-08 60.5 66 77.3
Prupe.8G075700 Prunus persica HOM05D007867 ORTHO05D009953 5.8e-08 60.5 68 79.4
Zm00001eb302470 Zea mays HOM05D007867 ORTHO05D009953 5.8e-08 60.5 79 69.6
DCAR_021457 Daucus carota HOM05D000419 ORTHO05D000692 9.8e-08 59.7 44 77.3
Prupe.6G209900 Prunus persica HOM05D007867 ORTHO05D009953 1.3e-07 59.3 66 77.3
Nitab4.5_0000036g0410 Nicotiana tabacum HOM05D007867 ORTHO05D009953 3.7e-07 57.8 62 82.3
Nitab4.5_0009046g0010 Nicotiana tabacum HOM05D007867 ORTHO05D009953 3.7e-07 57.8 62 82.3
CSS0034185 Camellia sinensis var. sinensis HOM05D007867 ORTHO05D009953 8.3e-07 56.6 24 100.0
Hma1.2p1_0908F.1_g235690 Hydrangea macrophylla HOM05D007867 ORTHO05D009953 8.3e-07 56.6 65 78.5
Lalb_Chr16g0381471 Lupinus albus HOM05D007867 ORTHO05D009953 2.4e-06 55.1 64 76.6
Psat2g134360 Pisum sativum HOM05D007867 ORTHO05D009953 3.2e-06 54.7 24 95.8
Potri.012G034400 Populus trichocarpa HOM05D007867 ORTHO05D009953 5.4e-06 53.9 67 76.1
SHI12190 Sapria himalayana HOM05D007867 ORTHO05D009953 5.4e-06 53.9 44 68.2


User provided reference genes

Program Settings