Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 4.4e-52 207.6 99 100.0
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 3.2e-39 164.9 98 80.6
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 5.5e-39 164.1 101 79.2
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 5.5e-39 164.1 101 79.2
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.6e-38 162.5 101 79.2
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 2.1e-38 162.2 100 79.0
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 2.1e-38 162.2 101 80.2
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.4e-37 159.5 101 77.2
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 3.0e-37 158.3 100 79.0
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 4.0e-37 157.9 97 80.4
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 8.8e-37 156.8 99 78.8
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 1.2e-36 156.4 100 79.0
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 1.2e-36 156.4 101 77.2
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 3.4e-36 154.8 101 76.2
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 4.4e-36 154.5 100 75.0
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 5.7e-36 154.1 99 76.8
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 7.5e-36 153.7 101 76.2
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.3e-35 152.9 101 73.3
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 1.3e-35 152.9 95 76.8
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.7e-35 152.5 99 77.8
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 2.2e-35 152.1 99 72.7
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 3.7e-35 151.4 99 73.7
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 3.7e-35 151.4 102 74.5
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 6.3e-35 150.6 93 74.2
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 6.3e-35 150.6 101 74.3
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 8.3e-35 150.2 101 74.3
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 1.1e-34 149.8 96 74.0
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 1.4e-34 149.4 100 74.0
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 3.1e-34 148.3 101 68.3
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 3.1e-34 148.3 99 73.7
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 4.1e-34 147.9 102 69.6
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 5.4e-34 147.5 98 70.4
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 5.4e-34 147.5 98 70.4
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 5.4e-34 147.5 99 73.7
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 5.4e-34 147.5 99 70.7
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 7.0e-34 147.1 101 68.3
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 7.0e-34 147.1 99 69.7
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 7.0e-34 147.1 97 76.3
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 7.0e-34 147.1 97 76.3
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 9.2e-34 146.7 99 73.7
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 9.2e-34 146.7 99 73.7
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 9.2e-34 146.7 100 73.0
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 9.2e-34 146.7 98 68.4
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 1.6e-33 146.0 102 73.5
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 2.0e-33 145.6 103 74.8
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.0e-33 145.6 103 74.8
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 2.0e-33 145.6 98 70.4
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 2.7e-33 145.2 99 69.7
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 2.7e-33 145.2 102 68.6
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 3.5e-33 144.8 103 74.8
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 3.5e-33 144.8 103 74.8
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 3.5e-33 144.8 102 72.5
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 3.5e-33 144.8 100 72.0
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 4.5e-33 144.4 98 69.4
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 4.5e-33 144.4 100 69.0
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 5.9e-33 144.1 99 71.7
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 5.9e-33 144.1 103 73.8
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 7.8e-33 143.7 101 72.3
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 1.7e-32 142.5 104 70.2
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 1.7e-32 142.5 103 73.8
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 1.7e-32 142.5 95 72.6
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 2.9e-32 141.7 103 70.9
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 2.9e-32 141.7 101 71.3
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 2.9e-32 141.7 100 68.0
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 2.9e-32 141.7 99 69.7
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 5.0e-32 141.0 89 79.8
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 5.0e-32 141.0 98 69.4
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 1.5e-31 139.4 89 79.8
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 1.9e-31 139.0 99 70.7
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 1.9e-31 139.0 99 68.7
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 2.5e-31 138.7 100 68.0
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 2.5e-31 138.7 100 68.0
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 3.3e-31 138.3 99 72.7
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 3.3e-31 138.3 101 65.3
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 3.3e-31 138.3 101 67.3
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 3.3e-31 138.3 97 67.0
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 3.3e-31 138.3 97 67.0
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 3.3e-31 138.3 104 68.3
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 5.6e-31 137.5 99 69.7
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 5.6e-31 137.5 99 68.7
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 5.6e-31 137.5 101 66.3
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 7.3e-31 137.1 97 69.1
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 7.3e-31 137.1 97 69.1
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 7.3e-31 137.1 101 70.3
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 1.2e-30 136.3 101 67.3
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 1.2e-30 136.3 102 70.6
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.2e-30 136.3 99 66.7
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 1.6e-30 136.0 97 66.0
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 2.1e-30 135.6 99 67.7
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 2.1e-30 135.6 102 68.6
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 2.1e-30 135.6 87 72.4
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 2.1e-30 135.6 98 67.3
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 2.1e-30 135.6 102 67.6
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 2.8e-30 135.2 100 66.0
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 6.1e-30 134.0 102 60.8
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 6.1e-30 134.0 99 67.7
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 6.1e-30 134.0 106 66.0
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 8.0e-30 133.7 99 66.7
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 1.0e-29 133.3 101 68.3
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 1.0e-29 133.3 89 74.2
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 1.0e-29 133.3 103 66.0
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 1.8e-29 132.5 90 73.3
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 2.3e-29 132.1 102 64.7
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 8.9e-29 130.2 89 75.3
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 1.2e-28 129.8 100 62.0
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 1.5e-28 129.4 85 71.8
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 1.5e-28 129.4 100 65.0
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.5e-28 129.4 88 70.5
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 2.6e-28 128.6 100 64.0
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 4.4e-28 127.9 97 64.9
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 5.7e-28 127.5 102 58.8
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 1.3e-27 126.3 90 67.8
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 2.9e-27 125.2 74 71.6
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 3.7e-27 124.8 98 64.3
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 8.3e-27 123.6 99 59.6
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 1.1e-26 123.2 127 54.3
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 2.4e-26 122.1 87 69.0
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 3.2e-26 121.7 99 58.6
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 7.0e-26 120.6 88 67.0
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 9.2e-26 120.2 87 64.4
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 4.6e-25 117.9 89 67.4
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 3.9e-24 114.8 90 62.2
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 5.0e-24 114.4 90 68.9
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 5.0e-24 114.4 89 62.9
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 1.1e-23 113.2 73 69.9
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 3.3e-23 111.7 90 63.3
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 1.8e-21 105.9 90 56.7
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 2.3e-21 105.5 80 60.0
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.0e-20 102.4 74 66.2
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 9.8e-20 100.1 50 82.0
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 8.3e-19 97.1 109 50.5
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.1e-18 96.7 72 66.7
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 3.2e-18 95.1 74 68.9
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 1.3e-16 89.7 72 65.3
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 1.7e-16 89.4 74 64.9
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 6.6e-16 87.4 91 49.5
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 8.6e-16 87.0 102 51.0
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 7.3e-15 84.0 75 56.0
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.2e-14 83.2 81 50.6
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 2.1e-14 82.4 74 58.1
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.4e-13 79.7 90 50.0
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 3.1e-13 78.6 75 53.3
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 4.0e-13 78.2 107 42.1
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 2.4e-10 68.9 35 80.0
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 3.2e-10 68.6 72 45.8
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 3.5e-09 65.1 72 45.8
PRCOL_00006369 Prasinoderma coloniale HOM05D004858 ORTHO05D005600 6.0e-09 64.3 83 38.6
SHI12046 Sapria himalayana HOM05D004858 ORTHO05D005600 1.0e-08 63.5 42 61.9
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 5.1e-08 61.2 53 52.8
A01p01210 Brassica napus HOM05D004858 ORTHO05D005600 1.2e-06 56.6 59 52.5


User provided reference genes

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