Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01006393001 Vitis vinifera HOM05D000089 ORTHO05D440337 1.1e-30 136.0 67 100.0
Haze_06680 Corylus avellana HOM05D000089 ORTHO05D000104 5.1e-12 73.9 110 41.8
QL05p077218 Quercus lobata HOM05D000089 ORTHO05D000104 6.7e-12 73.6 110 42.7
Cfa016403 Carpinus fangiana HOM05D000089 ORTHO05D000104 1.5e-11 72.4 110 41.8
GSVIVG01006396001 Vitis vinifera HOM05D000089 ORTHO05D000104 1.5e-11 72.4 110 41.8
Ah.09g237110 Amaranthus hybridus HOM05D000089 ORTHO05D000104 3.3e-11 71.2 70 52.9
MD10G1311100 Malus domestica HOM05D000089 ORTHO05D000104 3.3e-11 71.2 110 42.7
Manes.16G016400 Manihot esculenta HOM05D000089 ORTHO05D000104 4.3e-11 70.9 110 41.8
CANSAT56G3768 Cannabis sativa HOM05D000089 ORTHO05D000104 5.6e-11 70.5 110 40.9
CiPaw.09G079800 Carya illinoinensis HOM05D000089 ORTHO05D000104 7.4e-11 70.1 110 40.9
MD05G1335600 Malus domestica HOM05D000089 ORTHO05D000104 9.6e-11 69.7 110 41.8
Thecc.06G207800 Theobroma cacao HOM05D000089 ORTHO05D000104 9.6e-11 69.7 110 40.9
Potri.004G030700 Populus trichocarpa HOM05D000089 ORTHO05D000104 1.3e-10 69.3 110 40.9
Nn1g03740 Nelumbo nucifera HOM05D000089 ORTHO05D000104 1.6e-10 68.9 110 39.1
Cc00_g13610 Coffea canephora HOM05D000089 ORTHO05D000104 4.8e-10 67.4 110 40.0
Potri.011G031700 Populus trichocarpa HOM05D000089 ORTHO05D000104 4.8e-10 67.4 102 39.2
Solyc03g031470.3 Solanum lycopersicum HOM05D000089 ORTHO05D000104 8.2e-10 66.6 102 41.2
TWI38G0517 Tripterygium wilfordii HOM05D000089 ORTHO05D000104 8.2e-10 66.6 110 38.2
Actinidia26761 Actinidia chinensis HOM05D000089 ORTHO05D000104 1.4e-09 65.9 100 41.0
COL.COLO4_31680 Corchorus olitorius HOM05D000089 ORTHO05D000104 1.4e-09 65.9 110 39.1
Dinv17851 Davidia involucrata HOM05D000089 ORTHO05D000104 1.4e-09 65.9 104 39.4
Hma1.2p1_2932F.1_g330530 Hydrangea macrophylla HOM05D000089 ORTHO05D000104 1.4e-09 65.9 100 41.0
PGR004G2388 Punica granatum HOM05D000089 ORTHO05D000104 1.4e-09 65.9 100 41.0
TWI63G0671 Tripterygium wilfordii HOM05D000089 ORTHO05D000104 1.8e-09 65.5 100 39.0
Eucgr.D00858 Eucalyptus grandis HOM05D000089 ORTHO05D000104 2.4e-09 65.1 104 38.5
PGSC0003DMG400005065 Solanum tuberosum HOM05D000089 ORTHO05D000104 2.4e-09 65.1 100 41.0
Atru.chr10.2045 Acer truncatum HOM05D000089 ORTHO05D000104 3.1e-09 64.7 101 39.6
Lj1C1221T14 Lonicera japonica HOM05D000089 ORTHO05D000104 3.1e-09 64.7 102 39.2
Duzib192G0842 Durio zibethinus HOM05D000089 ORTHO05D000104 4.0e-09 64.3 104 38.5
Sopen03g005360 Solanum pennellii HOM05D000089 ORTHO05D000104 4.0e-09 64.3 102 39.2
Nitab4.5_0005140g0020 Nicotiana tabacum HOM05D000089 ORTHO05D000104 5.3e-09 63.9 97 42.3
Gohir.D05G170300 Gossypium hirsutum HOM05D000089 ORTHO05D000104 6.9e-09 63.5 110 38.2
Gorai.009G175500 Gossypium raimondii HOM05D000089 ORTHO05D000104 6.9e-09 63.5 110 38.2
Eucgr.D00689 Eucalyptus grandis HOM05D000089 ORTHO05D000104 1.2e-08 62.8 100 39.0
Gohir.A05G167300 Gossypium hirsutum HOM05D000089 ORTHO05D000104 1.2e-08 62.8 110 37.3
vmacro03739 Vaccinium macrocarpon HOM05D000089 ORTHO05D000104 1.2e-08 62.8 100 38.0
Nn1g06935 Nelumbo nucifera HOM05D000089 ORTHO05D000104 1.5e-08 62.4 110 37.3
TAR624G1391 Trochodendron aralioides HOM05D000089 ORTHO05D000104 1.5e-08 62.4 103 36.9
Ciclev10017667m.g Citrus clementina HOM05D000089 ORTHO05D000104 2.6e-08 61.6 102 37.3
RcHm_v2.0_Chr5g0004611 Rosa chinensis HOM05D000089 ORTHO05D000104 3.4e-08 61.2 110 35.5
Rhsim13G0162700 Rhododendron simsii HOM05D000089 ORTHO05D000104 4.5e-08 60.8 100 36.0
Medtr4g092080 Medicago truncatula HOM05D000089 ORTHO05D000104 5.8e-08 60.5 103 36.9
Lj4g0022792 Lotus japonicus HOM05D000089 ORTHO05D000104 7.6e-08 60.1 110 35.5
Ca_18452_v3 Cicer arietinum L. HOM05D000089 ORTHO05D000104 1.0e-07 59.7 103 36.9
FAN25G2246 Fragaria x ananassa HOM05D000089 ORTHO05D000104 1.0e-07 59.7 110 34.5
Psat7g105640 Pisum sativum HOM05D000089 ORTHO05D000104 1.3e-07 59.3 103 35.9
SHI02132 Sapria himalayana HOM05D000089 ORTHO05D000104 1.3e-07 59.3 100 36.0
CSS0033195 Camellia sinensis var. sinensis HOM05D000089 ORTHO05D000104 2.9e-07 58.2 104 37.5
CSS0041663 Camellia sinensis var. sinensis HOM05D000089 ORTHO05D000104 2.9e-07 58.2 104 37.5
PSO832G1497 Papaver somniferum HOM05D000089 ORTHO05D000104 2.9e-07 58.2 104 37.5
Aqoxy4G02139_Aqoxy4G02140 Aquilegia oxysepala HOM05D000089 ORTHO05D000104 3.8e-07 57.8 97 35.1
arahy.Tifrunner.gnm1.ann1.IK60LM Arachis hypogaea HOM05D000089 ORTHO05D000104 3.8e-07 57.8 101 35.6
arahy.Tifrunner.gnm1.ann1.W8TDEC Arachis hypogaea HOM05D000089 ORTHO05D000104 3.8e-07 57.8 101 35.6
FAN21G1023 Fragaria x ananassa HOM05D000089 ORTHO05D000104 3.8e-07 57.8 110 33.6
TPR.G13929 Trifolium pratense HOM05D000089 ORTHO05D000104 3.8e-07 57.8 103 35.9
AUR62012576 Chenopodium quinoa HOM05D000089 ORTHO05D000104 8.4e-07 56.6 97 39.2
THA.LOC104809521 Tarenaya hassleriana HOM05D000089 ORTHO05D000104 8.4e-07 56.6 102 36.3
PSO210G6582 Papaver somniferum HOM05D000089 ORTHO05D000104 1.1e-06 56.2 104 36.5
AUR62014624 Chenopodium quinoa HOM05D000089 ORTHO05D000104 1.9e-06 55.5 112 36.6
MBI02_g02470_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 1.9e-06 55.5 101 35.6
MD07G1021500 Malus domestica HOM05D000089 ORTHO05D000104 3.2e-06 54.7 66 39.4
EL10As6g23694 Beta vulgaris HOM05D000089 ORTHO05D000104 4.2e-06 54.3 103 36.9
CARHR050620 Cardamine hirsuta HOM05D000089 ORTHO05D000104 4.2e-06 54.3 100 37.0
Lj3g0000052 Lotus japonicus HOM05D000089 ORTHO05D000104 4.2e-06 54.3 60 43.3
Aa31LG2G9110 Aethionema arabicum HOM05D000089 ORTHO05D000104 5.5e-06 53.9 100 35.0
Thhalv10023567m.g Eutrema salsugineum HOM05D000089 ORTHO05D000104 5.5e-06 53.9 100 37.0
Glyma.08G062000 Glycine max HOM05D000089 ORTHO05D000104 5.5e-06 53.9 100 34.0
Glyma.08G062100 Glycine max HOM05D000089 ORTHO05D000104 5.5e-06 53.9 103 34.0
MBI18_g03646_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 5.5e-06 53.9 103 34.0
AL2G14400 Arabidopsis lyrata HOM05D000089 ORTHO05D000104 9.3e-06 53.1 100 36.0
AT1G61720 Arabidopsis thaliana HOM05D000089 ORTHO05D000104 9.3e-06 53.1 100 36.0
Cpa.g.sc81.4 Carica papaya HOM05D000089 ORTHO05D000104 9.3e-06 53.1 101 34.7
Lalb_Chr09g0327131 Lupinus albus HOM05D000089 ORTHO05D000104 9.3e-06 53.1 103 33.0
MBI18_g16500_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 9.3e-06 53.1 103 32.0


User provided reference genes

Program Settings