Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01006258001 Vitis vinifera HOM05D007035 ORTHO05D008774 2.6e-132 475.3 230 100.0
CiPaw.07G005600 Carya illinoinensis HOM05D007035 ORTHO05D008774 2.3e-88 329.3 204 73.0
Gohir.D03G004400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 6.7e-88 327.8 204 72.1
Gorai.003G004700 Gossypium raimondii HOM05D007035 ORTHO05D008774 6.7e-88 327.8 204 72.1
Thecc.01G009700 Theobroma cacao HOM05D007035 ORTHO05D008774 4.4e-87 325.1 204 72.5
Actinidia17600 Actinidia chinensis HOM05D007035 ORTHO05D008774 5.7e-87 324.7 205 70.7
QL06p052348 Quercus lobata HOM05D007035 ORTHO05D008774 5.7e-87 324.7 204 71.1
CSS0018213 Camellia sinensis var. sinensis HOM05D007035 ORTHO05D008774 7.4e-87 324.3 205 71.7
Gohir.A02G175400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 7.4e-87 324.3 204 71.6
Cfa015701 Carpinus fangiana HOM05D007035 ORTHO05D008774 9.7e-87 323.9 203 71.9
PGR102G2581 Punica granatum HOM05D007035 ORTHO05D008774 9.7e-87 323.9 204 69.1
Atru.chr3.931 Acer truncatum HOM05D007035 ORTHO05D008774 3.7e-86 322.0 205 71.7
vmacro18445 Vaccinium macrocarpon HOM05D007035 ORTHO05D008774 9.1e-85 317.4 203 69.5
Hma1.2p1_0315F.1_g122740 Hydrangea macrophylla HOM05D007035 ORTHO05D008774 2.6e-84 315.8 203 68.5
MD02G1242600 Malus domestica HOM05D007035 ORTHO05D008774 3.5e-84 315.5 206 68.0
CAN.G890.13 Capsicum annuum HOM05D007035 ORTHO05D008774 2.2e-83 312.8 205 69.8
Ciclev10026505m.g Citrus clementina HOM05D007035 ORTHO05D008774 2.2e-83 312.8 204 68.6
Rhsim08G0078500 Rhododendron simsii HOM05D007035 ORTHO05D008774 2.2e-83 312.8 203 70.4
Prupe.7G176600 Prunus persica HOM05D007035 ORTHO05D008774 3.8e-83 312.0 225 63.1
FvH4_1g10900 Fragaria vesca HOM05D007035 ORTHO05D008774 5.0e-83 311.6 204 66.7
Manes.02G111400 Manihot esculenta HOM05D007035 ORTHO05D008774 5.0e-83 311.6 204 69.1
FAN26G0170 Fragaria x ananassa HOM05D007035 ORTHO05D008774 1.1e-82 310.5 204 66.7
FAN19G1923 Fragaria x ananassa HOM05D007035 ORTHO05D008774 1.9e-82 309.7 204 66.2
FAN28G2890 Fragaria x ananassa HOM05D007035 ORTHO05D008774 1.9e-82 309.7 204 66.2
Oeu008100.1 Olea europaea HOM05D007035 ORTHO05D008774 1.9e-82 309.7 205 66.3
Sed0013381 Sechium edule HOM05D007035 ORTHO05D008774 2.5e-82 309.3 217 65.0
Potri.005G105500 Populus trichocarpa HOM05D007035 ORTHO05D008774 9.4e-82 307.4 203 70.0
Nitab4.5_0001696g0080 Nicotiana tabacum HOM05D007035 ORTHO05D008774 1.2e-81 307.0 204 67.2
FAN23G2784 Fragaria x ananassa HOM05D007035 ORTHO05D008774 3.6e-81 305.4 206 65.0
TAR628G1604 Trochodendron aralioides HOM05D007035 ORTHO05D008774 6.1e-81 304.7 231 61.5
ClCG01G020680 Citrullus lanatus HOM05D007035 ORTHO05D008774 8.0e-81 304.3 204 66.7
Ah.10g032510 Amaranthus hybridus HOM05D007035 ORTHO05D008774 1.4e-80 303.5 210 65.7
MELO3C007951.2 Cucumis melo HOM05D007035 ORTHO05D008774 3.0e-80 302.4 203 66.0
Migut.L00741 Erythranthe guttata HOM05D007035 ORTHO05D008774 5.2e-80 301.6 204 67.2
TWI59G1021 Tripterygium wilfordii HOM05D007035 ORTHO05D008774 5.2e-80 301.6 203 66.0
PGSC0003DMG400001578 Solanum tuberosum HOM05D007035 ORTHO05D008774 6.7e-80 301.2 205 67.3
Lalb_Chr05g0229721 Lupinus albus HOM05D007035 ORTHO05D008774 8.8e-80 300.8 204 66.2
Ca_03644_v3 Cicer arietinum L. HOM05D007035 ORTHO05D008774 1.5e-79 300.1 204 65.7
THA.LOC104807437 Tarenaya hassleriana HOM05D007035 ORTHO05D008774 1.5e-79 300.1 204 65.2
SGA_v2.0_scaffold229G43297 Striga asiatica HOM05D001343 ORTHO05D002008 2.6e-79 299.3 206 67.5
CsaV3_6G047600 Cucumis sativus L. HOM05D007035 ORTHO05D008774 3.3e-79 298.9 204 65.7
Phvul.003G267600 Phaseolus vulgaris HOM05D007035 ORTHO05D008774 3.3e-79 298.9 204 66.2
EL10Ac9g22991 Beta vulgaris HOM05D007035 ORTHO05D008774 9.7e-79 297.4 205 65.9
Solyc02g083180.4 Solanum lycopersicum HOM05D007035 ORTHO05D008774 1.7e-78 296.6 205 66.8
Sopen02g027940 Solanum pennellii HOM05D007035 ORTHO05D008774 1.7e-78 296.6 205 66.8
Lsat_1_v5_gn_2_75101 Lactuca sativa HOM05D007035 ORTHO05D008774 2.8e-78 295.8 204 65.2
Lj4g0012539 Lotus japonicus HOM05D007035 ORTHO05D008774 8.2e-78 294.3 204 63.7
SalBow5G2770 Salvia bowleyana HOM05D007035 ORTHO05D008774 1.4e-77 293.5 204 65.2
Medtr8g074720 Medicago truncatula HOM05D007035 ORTHO05D008774 3.1e-77 292.4 204 63.7
Psat4g103040 Pisum sativum HOM05D007035 ORTHO05D008774 3.1e-77 292.4 204 63.2
Nn6g31845 Nelumbo nucifera HOM05D007035 ORTHO05D008774 4.1e-77 292.0 208 63.5
HanXRQChr07g0192541 Helianthus annuus HOM05D007035 ORTHO05D008774 7.0e-77 291.2 204 64.7
CANSAT25G1910 Cannabis sativa HOM05D007035 ORTHO05D008774 1.6e-76 290.0 206 64.1
Eucgr.J02513 Eucalyptus grandis HOM05D007035 ORTHO05D008774 1.6e-76 290.0 208 65.4
A06p33710 Brassica napus HOM05D007035 ORTHO05D008774 3.5e-76 288.9 204 62.7
Cc07_g12370 Coffea canephora HOM05D007035 ORTHO05D008774 4.5e-76 288.5 203 63.1
BraA06t26305Z Brassica rapa HOM05D007035 ORTHO05D008774 1.0e-75 287.3 204 62.3
arahy.Tifrunner.gnm1.ann1.JN68AD Arachis hypogaea HOM05D007035 ORTHO05D008774 2.2e-75 286.2 206 63.1
arahy.Tifrunner.gnm1.ann1.Y2NACG Arachis hypogaea HOM05D007035 ORTHO05D008774 2.2e-75 286.2 206 63.1
Carub.0003s3179 Capsella rubella HOM05D007035 ORTHO05D008774 2.2e-75 286.2 204 61.3
BcaC01g02899 Brassica carinata HOM05D007035 ORTHO05D008774 2.9e-75 285.8 204 62.3
C03p58600 Brassica napus HOM05D007035 ORTHO05D008774 2.9e-75 285.8 204 61.8
BolC3t18121H Brassica oleracea HOM05D007035 ORTHO05D008774 2.9e-75 285.8 204 62.3
AT2G17695 Arabidopsis thaliana HOM05D007035 ORTHO05D008774 5.0e-75 285.0 204 60.8
AL3G50680 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 8.5e-75 284.3 204 60.8
DCAR_027629 Daucus carota HOM05D007035 ORTHO05D008774 8.5e-75 284.3 198 62.6
TPR.G32013 Trifolium pratense HOM05D007035 ORTHO05D008774 1.1e-74 283.9 194 65.5
BcaB08g34751 Brassica carinata HOM05D007035 ORTHO05D008774 1.9e-74 283.1 203 62.1
COL.COLO4_22513 Corchorus olitorius HOM05D007035 ORTHO05D008774 4.2e-74 282.0 202 65.8
Sp3g31080 Schrenkiella parvula HOM05D007035 ORTHO05D008774 4.2e-74 282.0 204 60.3
PSO675G7652 Papaver somniferum HOM05D007035 ORTHO05D008774 1.2e-73 280.4 206 65.0
PSO541G4772 Papaver somniferum HOM05D007035 ORTHO05D008774 2.7e-73 279.3 206 65.0
Thhalv10022849m.g Eutrema salsugineum HOM05D007035 ORTHO05D008774 2.3e-72 276.2 203 59.6
CDE09G0622 Ceratophyllum demersum HOM05D007035 ORTHO05D008774 6.8e-72 274.6 203 62.1
MBI05_g35104_MAGBIO Magnolia biondii HOM05D007035 ORTHO05D008774 6.8e-72 274.6 211 59.7
unitig_88.g27771 Utricularia gibba HOM05D007035 ORTHO05D008774 6.8e-72 274.6 206 61.2
Lj4A228G16 Lonicera japonica HOM05D007035 ORTHO05D008774 7.5e-71 271.2 184 66.8
QL06p052340 Quercus lobata HOM05D007035 ORTHO05D008774 9.8e-71 270.8 164 73.2
Peaxi162Scf00300g00123 Petunia axillaris HOM05D007035 ORTHO05D008774 1.3e-70 270.4 214 61.2
Hund08627 Selenicereus undatus HOM05D007035 ORTHO05D008774 1.7e-70 270.0 176 65.9
VMungo0251G2208 Vigna mungo HOM05D007035 ORTHO05D008774 1.2e-68 263.8 182 65.9
Aa31LG8G14960 Aethionema arabicum HOM05D000088 ORTHO05D000933 1.5e-66 256.9 181 64.6
ECA238G0027 Erigeron canadensis HOM05D007035 ORTHO05D008774 1.2e-65 253.8 185 62.7
AUR62032933 Chenopodium quinoa HOM05D007035 ORTHO05D008774 2.0e-63 246.5 163 67.5
RcHm_v2.0_Chr2g0098161 Rosa chinensis HOM05D007035 ORTHO05D008774 7.5e-63 244.6 161 65.8
Glyma.16G120900 Glycine max HOM05D007035 ORTHO05D008774 2.2e-62 243.0 161 67.1
MSTRG.15590 Avicennia marina HOM05D007035 ORTHO05D008774 7.8e-60 234.6 161 65.2
HPP92_014997 Vanilla planifolia HOM05D007035 ORTHO05D008774 1.3e-59 233.8 207 51.7
Os03g0107600 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 3.9e-59 232.3 215 50.7
Os04g0119300 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 3.9e-59 232.3 215 50.7
Dinv40155 Davidia involucrata HOM05D002155 ORTHO05D002215 5.0e-59 231.9 148 67.6
ATR0661G057 Amborella trichopoda HOM05D007035 ORTHO05D008774 2.5e-58 229.6 187 58.3
Zm00001eb241510 Zea mays HOM05D007035 ORTHO05D008774 4.0e-56 222.2 216 48.6
Sc20g0005390 Simmondsia chinensis HOM05D007035 ORTHO05D008774 6.8e-56 221.5 149 65.1
Cpa.g.sc6.337 Carica papaya HOM05D007035 ORTHO05D008774 2.2e-54 216.5 146 65.8
Pp3c1_37080 Physcomitrium patens HOM05D007035 ORTHO05D008774 5.4e-53 211.8 210 49.0
Duzib147G1308 Durio zibethinus HOM05D007035 ORTHO05D008774 1.9e-50 203.4 168 57.7
AL3G27500 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 3.6e-49 199.1 146 57.5
Aqoxy6G01870 Aquilegia oxysepala HOM05D007035 ORTHO05D008774 8.9e-48 194.5 148 59.5
AUR62017739 Chenopodium quinoa HOM05D007035 ORTHO05D008774 1.3e-46 190.7 121 71.1
Mapoly0027s0184 Marchantia polymorpha HOM05D007035 ORTHO05D008774 1.9e-45 186.8 218 43.6
CARHR107960 Cardamine hirsuta HOM05D007035 ORTHO05D008774 6.6e-43 178.3 120 65.0
Prupe.1G268600 Prunus persica HOM05D007035 ORTHO05D008774 4.9e-38 162.2 103 66.0
Prupe.6G001100 Prunus persica HOM05D007035 ORTHO05D008774 1.9e-37 160.2 103 65.0
SMO364G0252 Selaginella moellendorffii HOM05D007035 ORTHO05D008774 5.6e-34 148.7 164 44.5
Eucgr.J01132 Eucalyptus grandis HOM05D007035 ORTHO05D008774 8.1e-33 144.8 147 49.7
PRCOL_00002518 Prasinoderma coloniale HOM05D007035 ORTHO05D008774 2.4e-29 133.3 174 39.1
AagrBONN_evm.TU.Sc2ySwM_117.3401 Anthoceros agrestis HOM05D007035 ORTHO05D008774 2.1e-28 130.2 156 40.4
SEGI_40855 Sequoiadendron giganteum HOM05D007035 ORTHO05D008774 1.0e-27 127.9 168 36.9
Cre17.g720550 Chlamydomonas reinhardtii HOM05D007035 ORTHO05D008774 1.5e-26 124.0 209 32.1
CBR_g48433 Chara braunii HOM05D007035 ORTHO05D008774 4.3e-26 122.5 274 27.7
MCO10G322 Micromonas commoda HOM05D007035 ORTHO05D008774 3.4e-23 112.8 150 36.7
RcHm_v2.0_Chr5g0036401 Rosa chinensis HOM05D007035 ORTHO05D008774 7.1e-21 105.1 106 50.0
Cpa.g.sc6.336 Carica papaya HOM05D007035 ORTHO05D008774 3.4e-15 86.3 59 67.8
Peaxi162Scf00300g00119 Petunia axillaris HOM05D007035 ORTHO05D008774 8.4e-14 81.6 62 61.3
RcHm_v2.0_Chr5g0036471 Rosa chinensis HOM05D007035 ORTHO05D008774 6.7e-11 72.0 54 53.7


User provided reference genes

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