Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 6.7e-246 853.6 436 100.0
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 6.7e-246 853.6 436 100.0
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 4.5e-218 761.1 436 86.9
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 2.2e-217 758.8 436 85.3
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 6.5e-217 757.3 435 86.4
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 8.5e-217 756.9 432 86.8
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 2.5e-216 755.4 433 85.5
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 3.2e-216 755.0 436 85.8
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 1.6e-215 752.7 435 86.2
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 4.7e-215 751.1 436 85.1
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 6.1e-215 750.7 433 85.7
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.8e-214 749.2 433 84.5
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 5.2e-214 747.7 435 84.4
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.7e-212 742.7 432 85.4
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 1.1e-211 740.0 434 83.4
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 9.1e-211 736.9 433 84.5
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 2.7e-210 735.3 437 84.4
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 1.7e-209 732.6 435 83.7
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 1.2e-207 726.5 436 81.9
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 1.6e-207 726.1 437 82.2
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 4.7e-207 724.5 436 81.0
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.0e-205 719.2 426 83.3
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 2.0e-205 719.2 435 82.3
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 3.4e-205 718.4 436 81.0
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 9.8e-205 716.8 424 83.0
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 6.3e-204 714.1 434 81.8
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 8.3e-204 713.8 433 82.9
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 4.1e-203 711.4 428 82.7
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 1.0e-201 706.8 434 82.3
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 3.8e-201 704.9 435 81.8
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 3.8e-201 704.9 434 80.0
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 1.5e-200 703.0 432 81.5
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 1.5e-200 703.0 432 81.5
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 1.5e-200 703.0 432 81.5
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 1.5e-200 703.0 438 80.4
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 1.5e-200 703.0 432 82.6
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 2.5e-200 702.2 432 81.7
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 4.2e-200 701.4 426 81.9
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 4.2e-200 701.4 428 81.3
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 4.2e-200 701.4 436 81.0
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 4.2e-200 701.4 433 79.4
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 5.5e-200 701.0 436 79.4
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 1.6e-199 699.5 433 79.2
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 2.1e-199 699.1 425 81.4
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 6.1e-199 697.6 435 81.4
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 6.1e-199 697.6 433 79.2
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 1.0e-198 696.8 436 80.5
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 1.4e-198 696.4 435 80.9
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.8e-198 696.0 437 79.6
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 1.8e-198 696.0 434 80.9
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 2.3e-198 695.7 436 80.0
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 2.3e-198 695.7 436 80.3
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 3.0e-198 695.3 435 80.0
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 4.0e-198 694.9 435 79.8
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 4.0e-198 694.9 435 79.8
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 4.0e-198 694.9 435 79.8
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 5.2e-198 694.5 427 81.5
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 5.2e-198 694.5 436 80.0
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 5.2e-198 694.5 434 79.3
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 8.9e-198 693.7 436 78.0
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 1.5e-197 693.0 435 79.8
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 1.5e-197 693.0 430 79.5
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 2.0e-197 692.6 442 77.4
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 3.4e-197 691.8 430 81.2
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 3.4e-197 691.8 437 77.8
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 1.3e-196 689.9 440 79.5
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 1.3e-196 689.9 436 76.6
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 6.3e-196 687.6 436 76.4
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 8.3e-196 687.2 430 80.7
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 8.3e-196 687.2 430 80.5
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 1.1e-195 686.8 446 77.4
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 4.1e-195 684.9 436 76.1
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 5.9e-194 681.0 445 76.2
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 1.0e-193 680.2 447 76.1
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.3e-193 679.9 433 76.4
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 2.9e-193 678.7 432 76.2
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.1e-192 676.8 433 76.0
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 1.1e-192 676.8 416 80.8
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 3.3e-192 675.2 427 79.2
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 7.3e-192 674.1 424 80.2
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.1e-191 672.5 425 79.5
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 4.7e-191 671.4 432 76.4
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 2.3e-190 669.1 432 76.4
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 5.2e-190 667.9 429 76.0
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 5.2e-190 667.9 433 77.4
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 1.5e-189 666.4 427 75.6
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 2.6e-189 665.6 432 78.0
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 3.5e-186 655.2 437 74.8
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 4.3e-184 648.3 431 74.0
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 5.6e-184 647.9 437 74.6
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 9.5e-184 647.1 435 72.6
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 1.4e-182 643.3 391 81.1
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 2.3e-182 642.5 433 72.5
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 4.0e-182 641.7 416 76.9
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 2.6e-181 639.0 433 72.7
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 9.8e-181 637.1 434 72.4
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 9.8e-181 637.1 433 72.3
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 9.8e-181 637.1 429 72.5
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 1.7e-180 636.3 436 72.2
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 2.2e-180 636.0 433 72.1
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 3.7e-180 635.2 436 72.0
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 2.4e-179 632.5 434 71.9
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 1.2e-178 630.2 388 80.4
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 3.5e-178 628.6 433 71.8
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 1.7e-177 626.3 433 71.6
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 2.3e-177 625.9 434 70.3
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 5.1e-177 624.8 437 72.3
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 5.1e-177 624.8 433 70.2
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 1.6e-175 619.8 442 71.9
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 8.9e-174 614.0 434 69.4
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 7.5e-173 610.9 445 67.2
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.2e-170 603.6 386 78.0
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 9.5e-168 594.0 430 67.7
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 5.8e-165 584.7 433 66.1
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 6.4e-164 581.3 441 63.5
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 3.3e-160 568.9 428 66.6
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 1.2e-157 560.5 340 81.8
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 5.8e-157 558.1 383 70.8
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 6.4e-156 554.7 391 69.3
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 8.7e-153 544.3 433 63.3
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 6.9e-150 534.6 359 72.7
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 6.4e-148 528.1 320 80.3
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 2.8e-143 512.7 433 60.5
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 1.6e-135 486.9 434 60.1
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 3.4e-133 479.2 321 72.9
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 2.2e-124 449.9 446 50.2
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 3.7e-119 432.6 457 48.1
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.8e-118 430.3 427 50.1
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.8e-113 413.7 255 80.0
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.4e-105 387.5 223 87.0
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 3.0e-105 386.3 476 43.5
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 1.1e-99 367.9 476 40.3
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 3.7e-79 299.7 194 76.8
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.2e-66 258.1 159 81.1
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 1.2e-64 251.5 181 71.3
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 4.9e-63 246.1 151 80.8
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 2.2e-55 220.7 171 64.9
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 1.7e-44 184.5 159 56.6
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.4e-41 174.1 100 84.0
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 2.0e-32 144.4 97 71.1
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 5.8e-32 142.9 149 54.4
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 9.3e-22 109.0 98 58.2
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 7.9e-21 105.9 71 70.4
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 1.8e-17 94.7 49 93.9
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 2.4e-17 94.4 50 90.0
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 2.9e-15 87.4 65 70.8
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 5.0e-15 86.7 47 91.5
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.1e-14 85.5 419 24.1
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 2.5e-14 84.3 411 24.3
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 3.3e-11 73.9 46 76.1
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 1.5e-08 65.1 55 56.4
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 1.5e-08 65.1 55 56.4
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 1.5e-08 65.1 69 49.3
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 1.5e-08 65.1 74 47.3
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 2.2e-07 61.2 46 60.9


User provided reference genes

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