Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 1.6e-97 359.4 175 100.0
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 8.2e-70 267.3 186 72.0
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 3.1e-69 265.4 183 72.1
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 4.5e-68 261.5 186 72.0
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 4.5e-68 261.5 179 71.5
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 3.8e-67 258.5 189 67.7
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 8.5e-67 257.3 184 71.2
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 1.1e-66 256.9 184 69.0
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 2.5e-66 255.8 186 69.9
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 1.6e-65 253.1 185 68.6
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.7e-65 252.3 189 68.8
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 4.7e-65 251.5 185 68.6
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 6.1e-65 251.1 180 68.9
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 8.0e-65 250.8 184 67.4
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.0e-64 250.4 184 67.4
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 1.0e-64 250.4 184 68.5
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 1.8e-64 249.6 177 69.5
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 1.8e-64 249.6 191 66.5
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.3e-64 249.2 184 67.4
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 2.3e-64 249.2 189 68.8
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 3.9e-64 248.4 185 68.1
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 6.7e-64 247.7 189 67.7
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 6.7e-64 247.7 185 65.9
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 2.6e-63 245.7 189 65.6
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 3.3e-63 245.4 196 62.2
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 4.4e-63 245.0 185 68.6
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 4.4e-63 245.0 189 66.7
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 5.7e-63 244.6 135 82.2
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 9.7e-63 243.8 222 58.6
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 9.7e-63 243.8 175 68.0
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 9.7e-63 243.8 179 67.6
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 1.3e-62 243.4 185 67.6
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 1.7e-62 243.0 184 66.8
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 2.2e-62 242.7 183 65.0
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 1.1e-61 240.4 178 67.4
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 1.1e-61 240.4 180 67.8
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 1.4e-61 240.0 177 67.2
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.8e-61 239.6 183 65.0
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.8e-61 239.6 183 66.1
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 2.4e-61 239.2 180 69.4
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 2.4e-61 239.2 182 64.3
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 2.4e-61 239.2 179 65.9
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 4.1e-61 238.4 183 65.6
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 4.1e-61 238.4 180 65.6
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 7.0e-61 237.7 182 67.0
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 9.1e-61 237.3 179 65.4
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 1.2e-60 236.9 179 67.0
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.2e-60 236.9 183 67.2
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.6e-60 236.5 184 65.2
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 2.6e-60 235.7 179 65.4
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 5.9e-60 234.6 180 67.8
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 7.7e-60 234.2 191 61.8
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 7.7e-60 234.2 183 63.9
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 7.7e-60 234.2 180 65.0
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 1.0e-59 233.8 186 61.3
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 1.0e-59 233.8 187 62.0
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 2.9e-59 232.3 132 77.3
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 2.9e-59 232.3 130 82.3
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 3.8e-59 231.9 183 62.8
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 6.5e-59 231.1 186 62.4
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 6.5e-59 231.1 183 63.9
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 8.5e-59 230.7 183 62.8
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 8.5e-59 230.7 145 75.2
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 1.1e-58 230.3 132 81.8
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 1.5e-58 229.9 185 63.8
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.5e-58 229.9 179 64.2
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 1.5e-58 229.9 130 79.2
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.9e-58 229.6 179 64.2
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 2.5e-58 229.2 228 57.0
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 2.5e-58 229.2 132 75.8
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 3.2e-58 228.8 186 61.8
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 4.2e-58 228.4 182 63.2
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 5.5e-58 228.0 178 63.5
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 5.5e-58 228.0 190 59.5
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 7.2e-58 227.6 171 66.7
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 7.2e-58 227.6 185 61.6
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 7.2e-58 227.6 179 63.7
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 9.4e-58 227.3 147 74.1
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 9.4e-58 227.3 132 76.5
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 9.4e-58 227.3 194 59.3
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 9.4e-58 227.3 185 60.5
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.2e-57 226.9 179 63.1
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 1.2e-57 226.9 189 62.4
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 1.2e-57 226.9 195 60.0
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.6e-57 226.5 179 63.7
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 2.1e-57 226.1 182 61.5
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 2.1e-57 226.1 179 61.5
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 2.7e-57 225.7 184 60.3
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 2.7e-57 225.7 185 60.0
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 2.7e-57 225.7 128 79.7
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 3.6e-57 225.3 185 60.0
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 1.0e-56 223.8 183 61.2
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 1.0e-56 223.8 172 65.7
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.0e-56 223.8 142 76.1
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 4.0e-56 221.9 185 62.2
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 4.0e-56 221.9 181 65.2
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 5.2e-56 221.5 188 60.6
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 6.8e-56 221.1 130 76.9
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 1.2e-55 220.3 186 59.7
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.2e-55 220.3 131 77.9
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 1.2e-55 220.3 248 50.0
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 1.5e-55 219.9 180 58.3
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 2.6e-55 219.2 168 68.5
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 2.6e-55 219.2 161 67.1
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 3.4e-55 218.8 195 57.9
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 3.4e-55 218.8 135 74.1
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 9.8e-55 217.2 191 58.6
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 2.2e-54 216.1 206 56.8
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 2.8e-54 215.7 181 61.9
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 1.1e-53 213.8 193 57.5
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 1.8e-53 213.0 146 69.9
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 3.1e-53 212.2 115 80.9
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 9.1e-53 210.7 187 58.3
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 2.7e-52 209.1 272 45.6
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 2.7e-52 209.1 179 59.8
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 1.9e-50 203.0 129 72.9
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 3.2e-50 202.2 178 61.2
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.6e-49 199.9 162 65.4
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 4.7e-49 198.4 117 75.2
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 8.8e-48 194.1 183 57.4
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 2.8e-46 189.1 128 70.3
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.7e-46 188.7 158 62.7
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 1.1e-45 187.2 170 57.6
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 3.0e-40 169.1 123 61.0
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.7e-38 163.3 87 80.5
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 5.4e-37 158.3 125 54.4
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 7.0e-37 157.9 124 58.9
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 2.7e-36 156.0 111 68.5
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 1.8e-32 143.3 130 60.8
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.3e-30 137.1 86 72.1
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 4.9e-30 135.2 80 80.0
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 5.4e-29 131.7 158 45.6
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 4.6e-28 128.6 72 75.0
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 1.0e-27 127.5 72 75.0
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 2.3e-27 126.3 79 67.1
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.9e-26 123.2 134 56.7
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 9.5e-26 120.9 65 78.5
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 1.3e-22 110.5 110 59.1
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 1.9e-21 106.7 60 78.3
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 2.4e-21 106.3 113 43.4
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 1.0e-19 100.9 102 44.1
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 1.2e-12 77.4 88 55.7
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 4.3e-10 68.9 35 80.0
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 2.6e-07 59.7 52 50.0


User provided reference genes

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