Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 3.3e-101 371.7 185 100.0
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 4.1e-35 152.1 177 50.8
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 9.4e-32 141.0 195 50.8
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 9.4e-32 141.0 187 50.8
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.6e-31 140.2 201 51.2
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 1.4e-30 137.1 196 46.9
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 1.8e-30 136.7 185 50.8
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 3.0e-30 136.0 204 49.5
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 3.9e-30 135.6 177 48.6
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.5e-29 133.7 174 52.3
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 1.5e-29 133.7 201 46.3
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 4.4e-29 132.1 209 49.3
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 4.4e-29 132.1 177 51.4
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.8e-28 129.4 177 50.8
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.8e-28 129.4 177 50.8
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 8.2e-28 127.9 177 48.6
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 1.8e-27 126.7 201 45.3
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 3.1e-27 125.9 180 48.3
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 3.1e-27 125.9 199 46.2
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 5.3e-27 125.2 154 48.1
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 5.3e-27 125.2 181 46.4
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 9.1e-27 124.4 197 44.2
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 9.1e-27 124.4 188 47.3
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 1.2e-26 124.0 189 46.0
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.6e-26 123.6 183 45.9
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 2.0e-26 123.2 175 50.9
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 2.0e-26 123.2 165 45.5
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 2.6e-26 122.9 173 47.4
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 3.5e-26 122.5 176 47.2
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 3.5e-26 122.5 181 44.8
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 2.9e-25 119.4 191 47.1
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 3.8e-25 119.0 186 45.7
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 5.0e-25 118.6 181 44.8
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 6.5e-25 118.2 178 43.8
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 6.5e-25 118.2 191 46.1
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 6.5e-25 118.2 164 46.3
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 8.5e-25 117.9 179 43.6
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 8.5e-25 117.9 185 43.2
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 1.1e-24 117.5 187 44.9
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.1e-24 117.5 180 45.6
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 1.5e-24 117.1 175 45.1
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 1.5e-24 117.1 175 45.1
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 1.5e-24 117.1 159 45.9
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 1.5e-24 117.1 171 43.9
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 1.9e-24 116.7 164 46.3
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 1.9e-24 116.7 190 42.1
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 1.9e-24 116.7 170 44.7
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 4.2e-24 115.5 159 45.9
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 5.5e-24 115.2 193 42.5
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 7.2e-24 114.8 190 45.8
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 9.4e-24 114.4 158 46.8
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 9.4e-24 114.4 192 43.8
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 9.4e-24 114.4 155 48.4
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 2.1e-23 113.2 186 43.5
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 2.1e-23 113.2 194 45.4
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 3.6e-23 112.5 139 48.2
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 6.1e-23 111.7 193 41.5
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 6.1e-23 111.7 144 46.5
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 6.1e-23 111.7 148 48.6
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 3.0e-22 109.4 182 42.3
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 4.0e-22 109.0 192 42.7
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 4.0e-22 109.0 211 39.3
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 6.7e-22 108.2 151 46.4
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 6.7e-22 108.2 151 46.4
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 6.7e-22 108.2 211 38.4
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 6.7e-22 108.2 211 38.4
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 8.8e-22 107.8 147 45.6
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.2e-21 107.5 147 44.9
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.0e-21 106.7 152 44.7
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 2.6e-21 106.3 206 43.2
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 2.6e-21 106.3 182 41.8
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 2.6e-21 106.3 203 40.4
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 2.6e-21 106.3 175 45.1
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 4.4e-21 105.5 224 42.9
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 4.4e-21 105.5 151 48.3
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 4.4e-21 105.5 151 48.3
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 4.4e-21 105.5 168 46.4
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 9.7e-21 104.4 186 41.4
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 4.8e-20 102.1 194 43.3
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 8.2e-20 101.3 140 48.6
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 8.2e-20 101.3 139 48.9
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 1.4e-19 100.5 165 45.5
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 1.8e-19 100.1 189 39.7
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.4e-19 99.8 133 51.9
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 2.4e-19 99.8 173 41.0
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 2.4e-19 99.8 196 40.3
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 4.1e-19 99.0 194 40.7
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 5.3e-19 98.6 187 40.1
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 5.3e-19 98.6 175 43.4
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 5.3e-19 98.6 202 41.1
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 9.1e-19 97.8 204 40.7
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 1.6e-18 97.1 183 41.5
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.6e-18 97.1 160 40.0
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 7.7e-18 94.7 187 40.1
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 7.7e-18 94.7 212 39.6
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 1.0e-17 94.4 194 40.7
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.3e-17 94.0 164 41.5
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 1.7e-17 93.6 197 36.0
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 2.9e-17 92.8 216 38.4
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 5.0e-17 92.0 151 45.7
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 1.5e-16 90.5 193 38.3
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 1.5e-16 90.5 149 43.6
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.5e-16 90.5 202 39.1
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 1.9e-16 90.1 193 39.9
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 1.9e-16 90.1 235 39.1
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 2.5e-16 89.7 185 38.4
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 2.5e-16 89.7 204 35.3
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 3.2e-16 89.4 235 39.1
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 4.2e-16 89.0 166 41.0
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 5.5e-16 88.6 190 34.7
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 5.5e-16 88.6 235 39.1
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 9.4e-16 87.8 139 46.8
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 1.2e-15 87.4 151 46.4
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 1.6e-15 87.0 214 36.9
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 1.6e-15 87.0 180 38.3
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 2.1e-15 86.7 187 41.7
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 2.7e-15 86.3 146 40.4
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 3.6e-15 85.9 180 40.0
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 3.6e-15 85.9 211 35.5
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 4.7e-15 85.5 159 40.9
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 6.1e-15 85.1 175 37.7
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 1.0e-14 84.3 198 40.4
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.4e-14 84.0 116 50.0
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 4.0e-14 82.4 224 34.8
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 5.2e-14 82.0 194 38.1
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 6.8e-14 81.6 101 55.4
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 1.2e-13 80.9 156 40.4
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 3.4e-13 79.3 78 53.8
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 4.4e-13 79.0 87 50.6
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 5.7e-13 78.6 193 34.2
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 9.8e-13 77.8 207 33.3
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 1.7e-12 77.0 125 42.4
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 1.7e-12 77.0 162 42.6
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 4.8e-12 75.5 69 58.0
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 1.1e-11 74.3 88 45.5
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 1.4e-11 73.9 71 54.9
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 1.4e-11 73.9 193 35.2
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 3.1e-11 72.8 59 64.4
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.0e-10 70.1 64 56.2
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 2.0e-10 70.1 150 38.0
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 3.5e-10 69.3 215 34.9
Dinv19105 Davidia involucrata HOM05D004654 ORTHO05D005414 4.5e-10 68.9 180 37.2
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 4.5e-10 68.9 214 32.7
SGA_v2.0_scaffold42G16062 Striga asiatica HOM05D004654 ORTHO05D005414 4.5e-10 68.9 173 35.3
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 1.7e-09 67.0 180 33.3
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 3.8e-09 65.9 68 50.0
Lj5C23T4 Lonicera japonica HOM05D004654 ORTHO05D005414 5.0e-09 65.5 82 51.2
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 6.5e-09 65.1 79 46.8
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 1.1e-08 64.3 98 39.8
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 3.2e-08 62.8 211 31.3
Peaxi162Scf00784g00044 Petunia axillaris HOM05D004654 ORTHO05D005414 6.1e-07 58.5 60 55.0


User provided reference genes

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