Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01004975001 Vitis vinifera HOM05D005034 ORTHO05D006234 1.2e-123 446.4 220 100.0
Oeu010692.1 Olea europaea HOM05D005034 ORTHO05D006234 1.4e-95 353.2 219 79.0
PGR111G0056 Punica granatum HOM05D005034 ORTHO05D006234 7.9e-94 347.4 272 66.2
Nn064s42213 Nelumbo nucifera HOM05D005034 ORTHO05D006234 1.3e-93 346.7 273 67.0
Nn212s45210 Nelumbo nucifera HOM05D005034 ORTHO05D006234 1.3e-93 346.7 273 67.0
DCAR_032535 Daucus carota HOM05D005034 ORTHO05D006234 1.9e-92 342.8 280 64.3
PSO548G0041 Papaver somniferum HOM05D005034 ORTHO05D006234 1.9e-92 342.8 278 64.7
Gohir.1Z049831 Gossypium hirsutum HOM05D005034 ORTHO05D006234 7.4e-92 340.9 274 65.7
Gohir.A02G134200 Gossypium hirsutum HOM05D005034 ORTHO05D006234 7.4e-92 340.9 274 65.7
Sed0013321 Sechium edule HOM05D005034 ORTHO05D006234 2.1e-91 339.3 264 66.7
Lj2P1238T83 Lonicera japonica HOM05D005034 ORTHO05D006234 2.8e-91 339.0 272 64.7
Gohir.D03G077700 Gossypium hirsutum HOM05D005034 ORTHO05D006234 6.2e-91 337.8 274 65.3
Sed0020615 Sechium edule HOM05D005034 ORTHO05D006234 1.1e-90 337.0 259 68.0
CAN.G1045.13 Capsicum annuum HOM05D005034 ORTHO05D006234 2.6e-89 332.4 269 64.7
CAN.G134.8 Capsicum annuum HOM05D005034 ORTHO05D006234 2.6e-89 332.4 269 64.7
CAN.G1526.4 Capsicum annuum HOM05D005034 ORTHO05D006234 2.6e-89 332.4 269 64.7
CAN.G278.5 Capsicum annuum HOM05D005034 ORTHO05D006234 2.6e-89 332.4 269 64.7
CAN.G413.9 Capsicum annuum HOM05D005034 ORTHO05D006234 7.6e-89 330.9 269 64.3
HanXRQChr02g0059701 Helianthus annuus HOM05D005034 ORTHO05D006234 1.3e-88 330.1 276 63.0
HanXRQChr05g0152421 Helianthus annuus HOM05D005034 ORTHO05D006234 1.3e-88 330.1 276 63.0
HanXRQChr06g0182991 Helianthus annuus HOM05D005034 ORTHO05D006234 1.3e-88 330.1 276 63.0
HanXRQCPg0580361 Helianthus annuus HOM05D005034 ORTHO05D006234 1.3e-88 330.1 276 63.0
Gohir.D01G134300 Gossypium hirsutum HOM05D005034 ORTHO05D006234 5.5e-87 324.7 274 63.1
Lalb_Chr07g0191731 Lupinus albus HOM05D005034 ORTHO05D006234 1.2e-86 323.6 239 69.0
Medtr4g006130 Medicago truncatula HOM05D005034 ORTHO05D006234 3.0e-85 318.9 277 60.3
Ciclev10010882m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.9e-85 318.5 213 73.7
Ciclev10018423m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.9e-85 318.5 213 73.7
Ciclev10027633m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.9e-85 318.5 213 73.7
Ciclev10027652m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.9e-85 318.5 213 73.7
Ciclev10030457m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.9e-85 318.5 213 73.7
SalBow1G5942 Salvia bowleyana HOM05D005034 ORTHO05D006234 8.7e-85 317.4 271 61.3
LjContig00318g0021446 Lotus japonicus HOM05D005034 ORTHO05D006234 1.9e-84 316.2 277 60.6
LjContig00319g0026028 Lotus japonicus HOM05D005034 ORTHO05D006234 1.9e-84 316.2 277 60.6
arahy.Tifrunner.gnm1.ann1.ZFUC3L Arachis hypogaea HOM05D005034 ORTHO05D006234 5.6e-84 314.7 277 61.0
C07p33420 Brassica napus HOM05D005034 ORTHO05D006234 3.1e-82 308.9 280 59.6
C09p40380 Brassica napus HOM05D005034 ORTHO05D006234 3.1e-82 308.9 280 59.6
BolSC29t60503H Brassica oleracea HOM05D005034 ORTHO05D006234 3.1e-82 308.9 280 59.6
BolSC35t60695H Brassica oleracea HOM05D005034 ORTHO05D006234 3.1e-82 308.9 280 59.6
BolSC35t60701H Brassica oleracea HOM05D005034 ORTHO05D006234 3.1e-82 308.9 280 59.6
BolSC46t60961H Brassica oleracea HOM05D005034 ORTHO05D006234 3.1e-82 308.9 280 59.6
BolSC47t61067H Brassica oleracea HOM05D005034 ORTHO05D006234 3.1e-82 308.9 280 59.6
BolSC49t61140H Brassica oleracea HOM05D005034 ORTHO05D006234 3.1e-82 308.9 280 59.6
BraSC103t45426Z Brassica rapa HOM05D005034 ORTHO05D006234 6.9e-82 307.8 280 59.3
BraSC179t45777Z Brassica rapa HOM05D005034 ORTHO05D006234 6.9e-82 307.8 280 59.3
BraSC25t45907Z Brassica rapa HOM05D005034 ORTHO05D006234 6.9e-82 307.8 280 59.3
BraSC59t46548Z Brassica rapa HOM05D005034 ORTHO05D006234 6.9e-82 307.8 280 59.3
Migut.D01256 Erythranthe guttata HOM05D005034 ORTHO05D006234 6.9e-82 307.8 218 71.1
BolSC29t60543H Brassica oleracea HOM05D005034 ORTHO05D006234 1.0e-80 303.9 280 58.9
HanXRQChr00c0690g0576751 Helianthus annuus HOM05D005034 ORTHO05D006234 8.4e-80 300.8 217 69.6
ATCG01040 Arabidopsis thaliana HOM05D005034 ORTHO05D006234 1.4e-79 300.1 280 58.2
Peaxi162Scf01164g00036 Petunia axillaris HOM05D005034 ORTHO05D006234 1.9e-79 299.7 281 58.7
HanXRQChr11g0323731 Helianthus annuus HOM05D005034 ORTHO05D006234 3.9e-77 292.0 276 57.6
HanXRQChr17g0557781 Helianthus annuus HOM05D005034 ORTHO05D006234 2.8e-75 285.8 243 61.3
Gohir.A10G117233 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.6e-70 268.9 237 60.8
Sed0006489 Sechium edule HOM05D005034 ORTHO05D006234 5.7e-68 261.5 249 57.0
BraSC138t45537Z Brassica rapa HOM05D005034 ORTHO05D006234 2.8e-67 259.2 256 55.9
MBI10_g47592_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 2.8e-67 259.2 207 66.7
CSS0025903 Camellia sinensis var. sinensis HOM05D005034 ORTHO05D006234 2.6e-65 252.7 225 60.4
HanXRQChr09g0258531 Helianthus annuus HOM05D005034 ORTHO05D006234 9.4e-63 244.2 257 52.9
BolSC37t60790H Brassica oleracea HOM05D005034 ORTHO05D006234 7.9e-62 241.1 247 54.7
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 7.9e-62 241.1 156 77.6
HanXRQChr13g0413491 Helianthus annuus HOM05D005034 ORTHO05D006234 1.0e-61 240.7 224 57.6
Pp3c2_30980 Physcomitrium patens HOM05D005034 ORTHO05D006234 5.7e-60 235.0 230 51.7
CAN.G8.23 Capsicum annuum HOM05D005034 ORTHO05D006234 1.3e-56 223.8 205 58.0
Ciclev10013963m.g Citrus clementina HOM05D005034 ORTHO05D006234 4.2e-55 218.8 213 59.2
Eucgr.C03526 Eucalyptus grandis HOM05D005034 ORTHO05D006234 1.6e-54 216.9 187 61.0
RcHm_v2.0_Chr5g0017241 Rosa chinensis HOM05D005034 ORTHO05D006234 4.1e-50 202.2 109 86.2
Gohir.D03G074401 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.0e-49 199.9 148 66.9
Gorai.002G058800 Gossypium raimondii HOM05D005034 ORTHO05D006234 2.0e-49 199.9 148 66.9
Gohir.D08G145250 Gossypium hirsutum HOM05D005034 ORTHO05D006234 7.7e-49 198.0 107 84.1
PGSC0003DMG400029012 Solanum tuberosum HOM05D005034 ORTHO05D006234 1.0e-48 197.6 110 82.7
CAN.G939.6 Capsicum annuum HOM05D005034 ORTHO05D006234 1.7e-48 196.8 110 82.7
Gorai.009G333000 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.0e-45 187.6 104 83.7
Phvul.002G050101 Phaseolus vulgaris HOM05D005034 ORTHO05D006234 3.0e-45 186.0 105 80.0
Solyc08g022180.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 2.6e-44 183.0 112 75.9
Gohir.D05G311850 Gossypium hirsutum HOM05D005034 ORTHO05D006234 5.7e-44 181.8 104 81.7
CAN.G1431.1 Capsicum annuum HOM05D005034 ORTHO05D006234 3.7e-43 179.1 97 84.5
CAN.G424.20 Capsicum annuum HOM05D005034 ORTHO05D006234 3.7e-43 179.1 97 84.5
Hma1.2p1_0201F.1_g086105 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 1.4e-42 177.2 91 90.1
Hma1.2p1_0201F.1_g086120 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 1.4e-42 177.2 91 90.1
MCO12G235 Micromonas commoda HOM05D005034 ORTHO05D006234 1.4e-42 177.2 284 34.9
RcHm_v2.0_CPg0502821 Rosa chinensis HOM05D005034 ORTHO05D006234 9.1e-42 174.5 96 87.5
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 8.5e-40 167.9 135 65.2
CARHR178430 Cardamine hirsuta HOM05D005034 ORTHO05D006234 4.2e-39 165.6 105 73.3
Potri.001G342966 Populus trichocarpa HOM05D005034 ORTHO05D006234 5.5e-39 165.2 112 69.6
PRCOL_00005002 Prasinoderma coloniale HOM05D005034 ORTHO05D006234 3.6e-38 162.5 294 34.0
Prupe.5G061000 Prunus persica HOM05D005034 ORTHO05D006234 2.3e-37 159.8 85 85.9
Lj9P89T19 Lonicera japonica HOM05D005034 ORTHO05D006234 6.8e-37 158.3 112 70.5
Solyc00g500085.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.5e-36 157.1 112 69.6
BraSC143t45663Z Brassica rapa HOM05D005034 ORTHO05D006234 2.6e-36 156.4 143 58.7
HanXRQChr09g0251521 Helianthus annuus HOM05D005034 ORTHO05D006234 3.4e-36 156.0 112 68.8
Nn1g08156 Nelumbo nucifera HOM05D005034 ORTHO05D006234 4.4e-36 155.6 80 88.8
Gorai.003G181700 Gossypium raimondii HOM05D005034 ORTHO05D006234 6.3e-35 151.8 78 85.9
Gohir.D03G171050 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.4e-34 149.8 78 84.6
arahy.Tifrunner.gnm1.ann1.RW0ZF5 Arachis hypogaea HOM05D005034 ORTHO05D006234 1.2e-33 147.5 145 55.2
Lalb_Chr23g0274781 Lupinus albus HOM05D005034 ORTHO05D006234 3.5e-33 146.0 188 44.1
HanXRQChr01g0020081 Helianthus annuus HOM05D005034 ORTHO05D006234 4.5e-33 145.6 76 85.5
Solyc11g021210.2 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.3e-32 144.1 96 74.0
BolC9t56928H Brassica oleracea HOM05D005034 ORTHO05D006234 2.2e-32 143.3 142 55.6
HanXRQChr03g0073081 Helianthus annuus HOM05D005034 ORTHO05D006234 2.2e-32 143.3 81 82.7
Medtr4g006180 Medicago truncatula HOM05D005034 ORTHO05D006234 1.6e-30 137.1 122 59.8
HanXRQChr08g0212001 Helianthus annuus HOM05D005034 ORTHO05D006234 5.2e-29 132.1 84 77.4
SMO086G0050 Selaginella moellendorffii HOM05D005034 ORTHO05D006234 1.5e-28 130.6 269 38.7
Eucgr.J01554 Eucalyptus grandis HOM05D005034 ORTHO05D006234 1.3e-27 127.5 64 87.5
Lsat_1_v5_gn_5_11321 Lactuca sativa HOM05D005034 ORTHO05D006234 2.2e-27 126.7 85 69.4
HanXRQChr08g0211991 Helianthus annuus HOM05D005034 ORTHO05D006234 3.5e-25 119.4 65 84.6
Migut.L00238 Erythranthe guttata HOM05D005034 ORTHO05D006234 5.9e-25 118.6 77 70.1
Migut.L00236 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.7e-24 117.1 60 83.3
Migut.L00237 Erythranthe guttata HOM05D005034 ORTHO05D006234 6.6e-24 115.2 60 81.7
Hund25564 Selenicereus undatus HOM05D005034 ORTHO05D006234 1.2e-22 110.9 146 50.7
Nitab4.5_0001130g0150 Nicotiana tabacum HOM05D005034 ORTHO05D006234 2.3e-21 106.7 74 68.9
Medtr0002s0180 Medicago truncatula HOM05D005034 ORTHO05D006234 2.9e-19 99.8 59 78.0
Nitab4.5_0000100g0130 Nicotiana tabacum HOM05D005034 ORTHO05D006234 6.4e-19 98.6 71 70.4
Gohir.D10G247550 Gossypium hirsutum HOM05D005034 ORTHO05D006234 8.3e-19 98.2 52 80.8
MBI19_g35567_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 4.1e-18 95.9 47 87.2
Psat0s8829g0120 Pisum sativum HOM05D005034 ORTHO05D006234 9.2e-18 94.7 45 86.7
BolSC45t60912H Brassica oleracea HOM05D005034 ORTHO05D006234 1.2e-17 94.4 83 51.8
Gorai.011G286000 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.2e-17 94.4 52 76.9
Hma1.2p1_0665F.1_g199050 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 1.2e-17 94.4 46 97.8
Lalb_Chr18g0049451 Lupinus albus HOM05D005034 ORTHO05D006234 1.6e-17 94.0 76 64.5
Hma1.2p1_0382F.1_g140190 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 2.0e-17 93.6 54 85.2
Manes.18G138354 Manihot esculenta HOM05D005034 ORTHO05D006234 2.0e-17 93.6 51 86.3
BolC2t10593H Brassica oleracea HOM05D005034 ORTHO05D006234 4.6e-17 92.4 64 73.4
HanXRQChr00c0718g0576991 Helianthus annuus HOM05D005034 ORTHO05D006234 1.7e-16 90.5 53 77.4
Medtr4g050940 Medicago truncatula HOM05D001243 ORTHO05D000843 1.2e-12 77.8 49 77.6
BolC6t36207H Brassica oleracea HOM05D005034 ORTHO05D006234 2.6e-12 76.6 51 70.6
HanXRQChr00c0504g0575291 Helianthus annuus HOM05D005034 ORTHO05D006234 2.6e-12 76.6 47 76.6
Eucgr.K01772 Eucalyptus grandis HOM05D005034 ORTHO05D006234 5.8e-12 75.5 56 66.1
Nitab4.5_0001130g0160 Nicotiana tabacum HOM05D005034 ORTHO05D006234 2.2e-11 73.6 56 64.3
HanXRQChr01g0020091 Helianthus annuus HOM05D005034 ORTHO05D006234 3.7e-11 72.8 80 48.8
HanXRQChr00c0495g0575141 Helianthus annuus HOM05D005034 ORTHO05D006234 1.9e-10 70.5 63 55.6
Solyc00g500194.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 2.4e-10 70.1 42 81.0
Nitab4.5_0001446g0070 Nicotiana tabacum HOM05D005034 ORTHO05D006234 5.4e-10 68.9 56 60.7
Solyc02g150101.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 6.0e-09 65.5 56 60.7


User provided reference genes

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