Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01003936001 Vitis vinifera HOM05D004746 ORTHO05D005863 0.0e+00 1099.0 565 100.0
Manes.09G106500 Manihot esculenta HOM05D004746 ORTHO05D005863 2.0e-242 842.4 504 85.1
Atru.chr8.2277 Acer truncatum HOM05D004746 ORTHO05D005863 2.4e-240 835.5 504 83.5
Thecc.05G012200 Theobroma cacao HOM05D004746 ORTHO05D005863 3.2e-240 835.1 505 84.0
Duzib093G0324 Durio zibethinus HOM05D004746 ORTHO05D005863 6.0e-239 830.9 504 83.3
TWI74G1023 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 1.5e-237 826.2 504 82.1
Duzib128G0341 Durio zibethinus HOM05D004746 ORTHO05D005863 3.1e-235 818.5 504 82.5
Ciclev10010971m.g Citrus clementina HOM05D004746 ORTHO05D005863 3.4e-234 815.1 502 81.1
Gorai.012G116700 Gossypium raimondii HOM05D004746 ORTHO05D005863 1.7e-233 812.8 504 82.1
Potri.016G119900 Populus trichocarpa HOM05D004746 ORTHO05D005863 1.7e-233 812.8 504 81.5
Gohir.D04G132800 Gossypium hirsutum HOM05D004746 ORTHO05D005863 2.2e-233 812.4 504 82.1
FvH4_4g00010 Fragaria vesca HOM05D004746 ORTHO05D005863 5.5e-232 807.7 502 81.9
PGR031G3962 Punica granatum HOM05D004746 ORTHO05D005863 7.1e-232 807.4 504 80.8
CSS0006394 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 1.6e-231 806.2 507 81.1
CSS0013285 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 1.6e-231 806.2 507 81.1
Gohir.A04G093500 Gossypium hirsutum HOM05D004746 ORTHO05D005863 2.1e-231 805.8 502 81.9
QL07p034923 Quercus lobata HOM05D004746 ORTHO05D005863 7.9e-231 803.9 503 80.5
Gorai.002G262500 Gossypium raimondii HOM05D004746 ORTHO05D005863 3.0e-230 802.0 504 81.5
Gohir.A01G226580 Gossypium hirsutum HOM05D004746 ORTHO05D005863 3.9e-230 801.6 507 81.5
Glyma.18G203900 Glycine max HOM05D004746 ORTHO05D005863 1.1e-229 800.0 502 80.3
Phvul.008G095700 Phaseolus vulgaris HOM05D004746 ORTHO05D005863 2.5e-229 798.9 504 80.4
Sabra16G0115800 Salix brachista HOM05D004746 ORTHO05D005863 3.3e-229 798.5 529 77.3
FAN17G1409 Fragaria x ananassa HOM05D004746 ORTHO05D005863 7.4e-229 797.3 507 80.7
FAN22G0460 Fragaria x ananassa HOM05D004746 ORTHO05D005863 9.6e-229 797.0 507 80.7
Ca_07663_v3 Cicer arietinum L. HOM05D004746 ORTHO05D005863 2.1e-228 795.8 504 79.8
VMungo1383G1310 Vigna mungo HOM05D004746 ORTHO05D005863 6.2e-228 794.3 504 79.6
Psat3g125960 Pisum sativum HOM05D004746 ORTHO05D005863 8.1e-228 793.9 504 79.4
Lj1g0027952 Lotus japonicus HOM05D004746 ORTHO05D005863 1.1e-227 793.5 504 79.8
Gohir.D01G216252 Gossypium hirsutum HOM05D004746 ORTHO05D005863 1.5e-226 789.6 504 80.6
Haze_21030 Corylus avellana HOM05D004746 ORTHO05D005863 2.0e-226 789.3 504 80.6
Actinidia11569 Actinidia chinensis HOM05D004746 ORTHO05D005863 8.4e-225 783.9 505 78.4
TPR.G35441 Trifolium pratense HOM05D004746 ORTHO05D005863 2.5e-224 782.3 504 78.4
EL10Ac5g12532 Beta vulgaris HOM05D004746 ORTHO05D005863 9.3e-224 780.4 502 78.3
Eucgr.A00543 Eucalyptus grandis HOM05D004746 ORTHO05D005863 1.2e-223 780.0 502 77.3
AT3G08960 Arabidopsis thaliana HOM05D004746 ORTHO05D005863 2.7e-223 778.9 504 78.8
Glyma.07G152800 Glycine max HOM05D004746 ORTHO05D005863 3.5e-223 778.5 502 78.3
arahy.Tifrunner.gnm1.ann1.R9K5QN Arachis hypogaea HOM05D004746 ORTHO05D005863 6.0e-223 777.7 504 77.8
Hund10978 Selenicereus undatus HOM05D004746 ORTHO05D005863 6.0e-223 777.7 502 77.5
THA.LOC104823290 Tarenaya hassleriana HOM05D004746 ORTHO05D005863 1.3e-222 776.5 504 78.0
Medtr7g069460 Medicago truncatula HOM05D004746 ORTHO05D005863 2.3e-222 775.8 504 77.2
CARHR083300 Cardamine hirsuta HOM05D004746 ORTHO05D005863 8.7e-222 773.9 503 77.9
BolC5t34545H Brassica oleracea HOM05D004746 ORTHO05D005863 2.5e-221 772.3 504 77.4
CANSAT56G3938 Cannabis sativa HOM05D004746 ORTHO05D005863 2.5e-221 772.3 506 77.7
A05p39880 Brassica napus HOM05D004746 ORTHO05D005863 7.4e-221 770.8 504 77.2
C05p58920 Brassica napus HOM05D004746 ORTHO05D005863 7.4e-221 770.8 504 77.2
vmacro20299 Vaccinium macrocarpon HOM05D004746 ORTHO05D005863 1.3e-220 770.0 521 76.4
AL3G19980 Arabidopsis lyrata HOM05D004746 ORTHO05D005863 1.6e-220 769.6 504 77.8
BraSC256t45936Z Brassica rapa HOM05D004746 ORTHO05D005863 1.6e-220 769.6 504 77.2
Carub.0003s0809 Capsella rubella HOM05D004746 ORTHO05D005863 1.6e-220 769.6 504 77.8
Thhalv10019980m.g Eutrema salsugineum HOM05D004746 ORTHO05D005863 8.2e-220 767.3 504 77.8
Lalb_Chr19g0124371 Lupinus albus HOM05D004746 ORTHO05D005863 1.4e-219 766.5 502 77.7
Aa31LG5G18930 Aethionema arabicum HOM05D004746 ORTHO05D005863 2.4e-219 765.8 504 77.0
BolC3t16657H Brassica oleracea HOM05D004746 ORTHO05D005863 5.3e-219 764.6 504 77.0
AUR62010444 Chenopodium quinoa HOM05D004746 ORTHO05D005863 9.0e-219 763.8 502 76.7
Sopen09g001110 Solanum pennellii HOM05D004746 ORTHO05D005863 1.5e-218 763.1 504 75.2
BraA03t12796Z Brassica rapa HOM05D004746 ORTHO05D005863 4.5e-218 761.5 504 76.6
C03p43890 Brassica napus HOM05D004746 ORTHO05D005863 5.9e-218 761.1 504 76.6
A03p36250 Brassica napus HOM05D004746 ORTHO05D005863 7.6e-218 760.8 504 76.4
Sp3g07380 Schrenkiella parvula HOM05D004746 ORTHO05D005863 7.6e-218 760.8 504 76.6
Oeu033576.1 Olea europaea HOM05D004746 ORTHO05D005863 3.8e-217 758.4 565 69.2
MELO3C020253.2 Cucumis melo HOM05D004746 ORTHO05D005863 8.5e-217 757.3 504 76.8
PSO339G1342 Papaver somniferum HOM05D004746 ORTHO05D005863 1.1e-216 756.9 502 75.9
MSTRG.10207 Avicennia marina HOM05D004746 ORTHO05D005863 1.4e-216 756.5 504 75.2
Nn2g10907 Nelumbo nucifera HOM05D004746 ORTHO05D005863 5.5e-216 754.6 509 77.4
SGA_v2.0_scaffold85G26719 Striga asiatica HOM05D004746 ORTHO05D005863 9.3e-216 753.8 504 75.6
Migut.J00134 Erythranthe guttata HOM05D004746 ORTHO05D005863 2.1e-215 752.7 502 75.5
Sed0023855 Sechium edule HOM05D004746 ORTHO05D005863 7.9e-215 750.7 504 74.8
arahy.Tifrunner.gnm1.ann1.U1NNDF Arachis hypogaea HOM05D004746 ORTHO05D005863 1.0e-214 750.4 504 75.6
PSO801G0820 Papaver somniferum HOM05D004746 ORTHO05D005863 3.0e-214 748.8 502 75.3
CsaV3_3G021150 Cucumis sativus L. HOM05D004746 ORTHO05D005863 3.9e-214 748.4 504 75.4
DCAR_018683 Daucus carota HOM05D004746 ORTHO05D005863 6.7e-214 747.7 535 71.6
Oeu063393.2 Olea europaea HOM05D004746 ORTHO05D005863 7.4e-213 744.2 564 69.0
Cc06_g01090 Coffea canephora HOM05D004746 ORTHO05D005863 9.7e-213 743.8 502 74.5
AUR62030473 Chenopodium quinoa HOM05D004746 ORTHO05D005863 3.1e-211 738.8 508 73.8
DCAR_015390 Daucus carota HOM05D004746 ORTHO05D005863 3.1e-211 738.8 502 74.3
Aqoxy7G03079 Aquilegia oxysepala HOM05D004746 ORTHO05D005863 4.1e-211 738.4 503 73.8
Ah.02g115550 Amaranthus hybridus HOM05D004746 ORTHO05D005863 5.3e-211 738.0 516 73.3
ECA236G1680 Erigeron canadensis HOM05D004746 ORTHO05D005863 1.2e-210 736.9 502 75.3
Lsat_1_v5_gn_8_100840 Lactuca sativa HOM05D004746 ORTHO05D005863 1.3e-209 733.4 502 74.7
Lj3C949T2 Lonicera japonica HOM05D004746 ORTHO05D005863 4.6e-207 724.9 587 66.3
HanXRQChr12g0383171 Helianthus annuus HOM05D004746 ORTHO05D005863 1.0e-206 723.8 503 74.4
Actinidia29088 Actinidia chinensis HOM05D004746 ORTHO05D005863 5.1e-206 721.5 490 75.1
TWI77G0319 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 7.7e-202 707.6 504 72.8
Peaxi162Scf01132g00141 Petunia axillaris HOM05D004746 ORTHO05D005863 1.2e-199 700.3 491 72.3
CiPaw.09G211600 Carya illinoinensis HOM05D004746 ORTHO05D005863 1.6e-199 699.9 504 72.4
Sc01g0006870 Simmondsia chinensis HOM05D004746 ORTHO05D005863 3.0e-198 695.7 451 76.7
Gohir.D01G216126 Gossypium hirsutum HOM05D004746 ORTHO05D005863 2.0e-197 693.0 519 73.0
BcaC05g29630 Brassica carinata HOM05D004746 ORTHO05D005863 4.1e-195 685.3 474 73.8
unitig_26.g9084 Utricularia gibba HOM05D004746 ORTHO05D005863 1.6e-191 673.3 517 66.2
ClCG05G011310 Citrullus lanatus HOM05D004746 ORTHO05D005863 1.4e-190 670.2 487 71.9
Nitab4.5_0000195g0230 Nicotiana tabacum HOM05D004746 ORTHO05D005863 4.0e-190 668.7 491 70.5
Nitab4.5_0009417g0010 Nicotiana tabacum HOM05D004746 ORTHO05D005863 4.0e-190 668.7 490 70.8
MBI01_g40022_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 1.3e-188 663.7 454 72.5
Dinv13139 Davidia involucrata HOM05D004746 ORTHO05D005863 1.2e-186 657.1 406 81.3
Cfa017175 Carpinus fangiana HOM05D004746 ORTHO05D005863 3.8e-185 652.1 406 81.8
ATR0681G361 Amborella trichopoda HOM05D004746 ORTHO05D005863 5.0e-185 651.7 508 65.4
CDE08G1427 Ceratophyllum demersum HOM05D004746 ORTHO05D005863 1.5e-181 640.2 511 63.8
BcaC01g04209 Brassica carinata HOM05D004746 ORTHO05D005863 8.5e-177 624.4 504 65.9
MD04G1000400 Malus domestica HOM05D004746 ORTHO05D005863 3.1e-171 605.9 394 78.2
Cpa.g.sc120.53 Carica papaya HOM05D004746 ORTHO05D005863 2.9e-169 599.4 467 68.3
HPP92_001120 Vanilla planifolia HOM05D004746 ORTHO05D005863 4.0e-158 562.4 507 58.4
Zm00001eb111960 Zea mays HOM05D004746 ORTHO05D005863 5.2e-150 535.4 455 59.1
Mapoly0056s0005 Marchantia polymorpha HOM05D004746 ORTHO05D005863 4.4e-133 479.2 519 48.4
PGSC0003DMG400006259 Solanum tuberosum HOM05D004746 ORTHO05D005863 7.6e-133 478.4 312 76.3
Pp3c14_210 Physcomitrium patens HOM05D004746 ORTHO05D005863 7.8e-130 468.4 514 47.5
Prupe.1G000300 Prunus persica HOM05D004746 ORTHO05D005863 1.3e-127 461.1 385 64.7
SEGI_16247 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 2.0e-125 453.8 373 58.7
Pp3c2_22550 Physcomitrium patens HOM05D004746 ORTHO05D005863 4.5e-125 452.6 514 47.1
Dinv16904 Davidia involucrata HOM05D004746 ORTHO05D005863 2.9e-124 449.9 469 56.3
SMO241G0033 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 3.0e-121 439.9 532 44.7
AagrBONN_evm.TU.Sc2ySwM_362.215 Anthoceros agrestis HOM05D004746 ORTHO05D005863 1.5e-120 437.6 484 46.5
Os07g0693400 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 1.5e-112 411.0 507 45.8
SMO232G0101 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 2.1e-111 407.1 512 43.9
Glyma.16G097152 Glycine max HOM05D004746 ORTHO05D005863 5.3e-110 402.5 279 74.9
Psat2g043480 Pisum sativum HOM05D004746 ORTHO05D005863 5.3e-86 322.8 230 72.2
HPP92_001053 Vanilla planifolia HOM05D004746 ORTHO05D005863 2.9e-84 317.0 285 59.6
CBR_g44564 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-63 247.7 255 48.2
PRCOL_00000669 Prasinoderma coloniale HOM05D004746 ORTHO05D005863 1.2e-61 241.9 525 32.6
Prupe.1G000100 Prunus persica HOM05D004746 ORTHO05D005863 4.0e-49 200.3 109 88.1
TAR633G1894 Trochodendron aralioides HOM05D004746 ORTHO05D005863 2.6e-48 197.6 103 91.3
MD04G1000200 Malus domestica HOM05D004746 ORTHO05D005863 9.8e-48 195.7 103 89.3
CAN.G5.2 Capsicum annuum HOM05D004746 ORTHO05D005863 9.2e-46 189.1 135 75.6
Cre02.g078885 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D005863 7.8e-37 159.5 597 26.5
COL.COLO4_14504 Corchorus olitorius HOM05D004746 ORTHO05D005863 1.2e-34 152.1 88 83.0
CAN.G5.1 Capsicum annuum HOM05D004746 ORTHO05D005863 1.2e-32 145.6 92 75.0
CBR_g44565 Chara braunii HOM05D004746 ORTHO05D001702 2.6e-32 144.4 188 41.5
Psat0ss9382g0120 Pisum sativum HOM05D002370 ORTHO05D003878 1.5e-24 118.6 82 68.3
MD14G1122700 Malus domestica HOM05D000325 ORTHO05D001655 1.6e-21 108.6 121 51.2
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 1.1e-19 102.4 68 72.1
SalBow5G0496 Salvia bowleyana HOM05D004746 ORTHO05D005863 5.6e-19 100.1 77 62.3
SEGI_11102 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 1.2e-18 99.0 123 44.7
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 1.6e-18 98.6 106 54.7
FAN17G0995 Fragaria x ananassa HOM05D004746 ORTHO05D005863 2.4e-17 94.7 56 78.6
ClCG05G011300 Citrullus lanatus HOM05D004746 ORTHO05D005863 3.1e-09 67.8 33 93.9
Psat0s1759g0080 Pisum sativum HOM05D001955 ORTHO05D001917 7.6e-08 63.2 50 64.0
Dinv16905 Davidia involucrata HOM05D004746 ORTHO05D005863 1.9e-06 58.5 29 93.1


User provided reference genes

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