Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01003368001 Vitis vinifera HOM05D000625 ORTHO05D000467 1.5e-21 105.1 49 100.0
GSVIVG01003377001 Vitis vinifera HOM05D000625 ORTHO05D000467 3.0e-09 64.3 36 83.3
CiPaw.03G117500 Carya illinoinensis HOM05D000625 ORTHO05D000467 1.5e-08 62.0 44 68.2
Nn5g28425 Nelumbo nucifera HOM05D000625 ORTHO05D000467 1.5e-08 62.0 36 83.3
Eucgr.I00114 Eucalyptus grandis HOM05D000625 ORTHO05D000467 2.5e-08 61.2 36 80.6
Cfa002194 Carpinus fangiana HOM05D000625 ORTHO05D000467 3.3e-08 60.8 36 80.6
CiPaw.04G078900 Carya illinoinensis HOM05D000625 ORTHO05D000467 3.3e-08 60.8 36 80.6
CDE06G2822 Ceratophyllum demersum HOM05D000625 ORTHO05D004359 3.3e-08 60.8 36 77.8
CDE08G0640 Ceratophyllum demersum HOM05D000625 ORTHO05D000467 3.3e-08 60.8 36 77.8
Eucgr.H05116 Eucalyptus grandis HOM05D000625 ORTHO05D000467 3.3e-08 60.8 36 80.6
Gohir.A07G194800 Gossypium hirsutum HOM05D000625 ORTHO05D000467 3.3e-08 60.8 36 80.6
Gohir.D07G168800 Gossypium hirsutum HOM05D000625 ORTHO05D000467 3.3e-08 60.8 36 80.6
Gohir.D07G201200 Gossypium hirsutum HOM05D000625 ORTHO05D000467 3.3e-08 60.8 36 80.6
Gorai.001G225900 Gossypium raimondii HOM05D000625 ORTHO05D000467 3.3e-08 60.8 36 80.6
Gorai.N000800 Gossypium raimondii HOM05D000625 ORTHO05D000467 3.3e-08 60.8 36 80.6
Haze_25367 Corylus avellana HOM05D000625 ORTHO05D000467 4.3e-08 60.5 36 77.8
Cpa.g.sc8.13 Carica papaya HOM05D000625 ORTHO05D000467 5.6e-08 60.1 36 77.8
Duzib133G1123 Durio zibethinus HOM05D000625 ORTHO05D000467 5.6e-08 60.1 36 80.6
Gohir.A11G145800 Gossypium hirsutum HOM05D000625 ORTHO05D000467 5.6e-08 60.1 36 80.6
Gorai.007G162500 Gossypium raimondii HOM05D000625 ORTHO05D000467 5.6e-08 60.1 36 80.6
MBI06_g35203_MAGBIO Magnolia biondii HOM05D000625 ORTHO05D000467 5.6e-08 60.1 36 77.8
Manes.13G058000 Manihot esculenta HOM05D000625 ORTHO05D000467 5.6e-08 60.1 36 80.6
Potri.002G217200 Populus trichocarpa HOM05D000625 ORTHO05D000467 5.6e-08 60.1 36 80.6
Thecc.01G204100 Theobroma cacao HOM05D000625 ORTHO05D000467 5.6e-08 60.1 36 80.6
PGR119G0887 Punica granatum HOM05D000625 ORTHO05D000467 7.3e-08 59.7 36 77.8
VMungo0251G0936 Vigna mungo HOM05D000625 ORTHO05D000467 7.3e-08 59.7 36 77.8
arahy.Tifrunner.gnm1.ann1.3HMZ7U Arachis hypogaea HOM05D000625 ORTHO05D000467 9.5e-08 59.3 36 77.8
arahy.Tifrunner.gnm1.ann1.50NPJN Arachis hypogaea HOM05D000625 ORTHO05D000467 9.5e-08 59.3 36 77.8
arahy.Tifrunner.gnm1.ann1.T0GB9L Arachis hypogaea HOM05D000625 ORTHO05D000467 9.5e-08 59.3 36 77.8
arahy.Tifrunner.gnm1.ann1.WBP6BL Arachis hypogaea HOM05D000625 ORTHO05D000467 9.5e-08 59.3 36 77.8
Glyma.05G194500 Glycine max HOM05D000625 ORTHO05D000467 9.5e-08 59.3 36 77.8
Glyma.08G002300 Glycine max HOM05D000625 ORTHO05D000467 9.5e-08 59.3 36 77.8
Prupe.4G277600 Prunus persica HOM05D000625 ORTHO05D000467 9.5e-08 59.3 36 77.8
Actinidia34520 Actinidia chinensis HOM05D000625 ORTHO05D000467 1.2e-07 58.9 36 77.8
CANSAT01G1586 Cannabis sativa HOM05D000625 ORTHO05D000467 1.2e-07 58.9 36 80.6
FvH4_1g25040 Fragaria vesca HOM05D000625 ORTHO05D000467 1.2e-07 58.9 36 77.8
FAN19G0720 Fragaria x ananassa HOM05D000625 ORTHO05D000467 1.2e-07 58.9 36 77.8
FAN23G2793 Fragaria x ananassa HOM05D000625 ORTHO05D000467 1.2e-07 58.9 36 77.8
FAN26G2377 Fragaria x ananassa HOM05D000625 ORTHO05D000467 1.2e-07 58.9 36 77.8
FAN28G2452 Fragaria x ananassa HOM05D000625 ORTHO05D000467 1.2e-07 58.9 36 77.8
Gohir.A07G162300 Gossypium hirsutum HOM05D000625 ORTHO05D000467 1.2e-07 58.9 36 77.8
Potri.014G197600 Populus trichocarpa HOM05D000625 ORTHO05D000467 1.2e-07 58.9 36 77.8
RcHm_v2.0_Chr2g0122701 Rosa chinensis HOM05D000625 ORTHO05D000467 1.2e-07 58.9 36 77.8
vmacro02849 Vaccinium macrocarpon HOM05D000625 ORTHO05D000467 1.2e-07 58.9 36 77.8
Glyma.04G209400 Glycine max HOM05D000625 ORTHO05D000467 1.6e-07 58.5 36 75.0
Glyma.06G156500 Glycine max HOM05D000625 ORTHO05D000467 1.6e-07 58.5 36 75.0
Gohir.D11G151800 Gossypium hirsutum HOM05D000625 ORTHO05D000467 1.6e-07 58.5 36 77.8
Lj1g0012266 Lotus japonicus HOM05D000625 ORTHO05D000467 1.6e-07 58.5 36 75.0
Lalb_Chr12g0203011 Lupinus albus HOM05D000625 ORTHO05D000467 1.6e-07 58.5 44 65.9
PGR102G3254 Punica granatum HOM05D000625 ORTHO05D000467 1.6e-07 58.5 36 77.8
Rhsim01G0246300 Rhododendron simsii HOM05D000625 ORTHO05D000467 1.6e-07 58.5 36 75.0
TAR376G0306 Trochodendron aralioides HOM05D000625 ORTHO05D000467 1.6e-07 58.5 36 77.8
vmacro14671 Vaccinium macrocarpon HOM05D000625 ORTHO05D000467 1.6e-07 58.5 36 77.8
VMungo1309G1033 Vigna mungo HOM05D000625 ORTHO05D000467 1.6e-07 58.5 36 75.0
Actinidia23137 Actinidia chinensis HOM05D000625 ORTHO05D000467 2.1e-07 58.2 36 77.8
CANSAT25G1572 Cannabis sativa HOM05D000625 ORTHO05D000467 2.1e-07 58.2 44 61.4
Nn1g08903 Nelumbo nucifera HOM05D000625 ORTHO05D000467 2.1e-07 58.2 36 77.8
TWI36G0254 Tripterygium wilfordii HOM05D000625 ORTHO05D000467 2.1e-07 58.2 36 77.8
GSVIVG01022322001 Vitis vinifera HOM05D000625 ORTHO05D000467 2.1e-07 58.2 36 77.8
Ciclev10014131m.g Citrus clementina HOM05D000625 ORTHO05D000467 2.8e-07 57.8 36 75.0
Manes.12G058900 Manihot esculenta HOM05D000625 ORTHO05D000467 2.8e-07 57.8 36 77.8
Rhsim13G0056100 Rhododendron simsii HOM05D000625 ORTHO05D000467 2.8e-07 57.8 36 75.0
SGA_v2.0_scaffold120G33018 Striga asiatica HOM05D000625 ORTHO05D000467 2.8e-07 57.8 36 75.0
Ca_17620_v3 Cicer arietinum L. HOM05D000625 ORTHO05D000467 3.6e-07 57.4 44 63.6
Lj1A108T44 Lonicera japonica HOM05D000625 ORTHO05D000467 3.6e-07 57.4 36 72.2
MD00G1181300 Malus domestica HOM05D000625 ORTHO05D000467 3.6e-07 57.4 36 75.0
Nitab4.5_0010771g0020 Nicotiana tabacum HOM05D000625 ORTHO05D000467 3.6e-07 57.4 36 75.0
Nitab4.5_0011643g0010 Nicotiana tabacum HOM05D000625 ORTHO05D000467 3.6e-07 57.4 36 75.0
Psat5g059240 Pisum sativum HOM05D000625 ORTHO05D000467 3.6e-07 57.4 38 68.4
TAR628G1328 Trochodendron aralioides HOM05D000625 ORTHO05D000467 3.6e-07 57.4 36 75.0
ClCG04G001900 Citrullus lanatus HOM05D000625 ORTHO05D000467 4.7e-07 57.0 36 75.0
MELO3C008941.2 Cucumis melo HOM05D000625 ORTHO05D000467 4.7e-07 57.0 36 75.0
CsaV3_4G030730 Cucumis sativus L. HOM05D000625 ORTHO05D000467 4.7e-07 57.0 36 75.0
Dinv02952 Davidia involucrata HOM05D000625 ORTHO05D000467 4.7e-07 57.0 36 72.2
Lj2A1109T72 Lonicera japonica HOM05D000625 ORTHO05D000467 4.7e-07 57.0 39 66.7
Lj4g0015326 Lotus japonicus HOM05D000625 ORTHO05D000467 4.7e-07 57.0 44 63.6
Os12g0548200 Oryza sativa ssp. japonica HOM05D000625 ORTHO05D000467 4.7e-07 57.0 36 72.2
Phvul.002G274800 Phaseolus vulgaris HOM05D000625 ORTHO05D000467 4.7e-07 57.0 36 75.0
QL10p040957 Quercus lobata HOM05D000625 ORTHO05D000467 4.7e-07 57.0 36 72.2
QL10p040983 Quercus lobata HOM05D000625 ORTHO05D000467 4.7e-07 57.0 36 72.2
Sed0022218 Sechium edule HOM05D000625 ORTHO05D000467 4.7e-07 57.0 36 75.0
CSS0033916 Camellia sinensis var. sinensis HOM05D000625 ORTHO05D000467 6.2e-07 56.6 36 75.0
Cc01_g15750 Coffea canephora HOM05D000625 ORTHO05D000467 6.2e-07 56.6 36 72.2
Nitab4.5_0001348g0210 Nicotiana tabacum HOM05D000625 ORTHO05D000467 6.2e-07 56.6 36 75.0
Nitab4.5_0012925g0010 Nicotiana tabacum HOM05D000625 ORTHO05D000467 6.2e-07 56.6 36 75.0
Peaxi162Scf00424g00069 Petunia axillaris HOM05D000625 ORTHO05D000467 6.2e-07 56.6 36 75.0
Sc09g0002090 Simmondsia chinensis HOM05D000625 ORTHO05D000467 6.2e-07 56.6 36 75.0
THA.LOC104808822 Tarenaya hassleriana HOM05D000625 ORTHO05D000467 6.2e-07 56.6 36 72.2
TWI18G0909 Tripterygium wilfordii HOM05D000625 ORTHO05D000467 6.2e-07 56.6 36 75.0
Aa31sc249G60 Aethionema arabicum HOM05D000625 ORTHO05D000467 8.1e-07 56.2 36 75.0
MSTRG.17944 Avicennia marina HOM05D000625 ORTHO05D000467 8.1e-07 56.2 36 72.2
HanXRQChr16g0508381 Helianthus annuus HOM05D000625 ORTHO05D000467 8.1e-07 56.2 36 75.0
Lalb_Chr23g0272701 Lupinus albus HOM05D000625 ORTHO05D000467 8.1e-07 56.2 36 72.2
Medtr8g494210 Medicago truncatula HOM05D000625 ORTHO05D000467 8.1e-07 56.2 44 63.6
PGSC0003DMG402027680 Solanum tuberosum HOM05D000625 ORTHO05D000467 8.1e-07 56.2 36 72.2
SGA_v2.0_scaffold77G25329 Striga asiatica HOM05D000625 ORTHO05D000467 8.1e-07 56.2 36 75.0
TPR.G37379 Trifolium pratense HOM05D000625 ORTHO05D000467 8.1e-07 56.2 44 63.6
Ah.06g191140 Amaranthus hybridus HOM05D000625 ORTHO05D000467 1.1e-06 55.8 36 72.2
PSO170G1978 Papaver somniferum HOM05D000625 ORTHO05D000467 1.1e-06 55.8 36 72.2
PSO528G0122 Papaver somniferum HOM05D000625 ORTHO05D000467 1.1e-06 55.8 36 72.2
Hund07228 Selenicereus undatus HOM05D000625 ORTHO05D000467 1.1e-06 55.8 36 75.0
Solyc09g018960.4 Solanum lycopersicum HOM05D000625 ORTHO05D000467 1.1e-06 55.8 36 72.2
Sopen09g012690 Solanum pennellii HOM05D000625 ORTHO05D000467 1.1e-06 55.8 36 72.2
TWI75G0543 Tripterygium wilfordii HOM05D000625 ORTHO05D000467 1.1e-06 55.8 36 72.2
vmacro00857 Vaccinium macrocarpon HOM05D000625 ORTHO05D000467 1.1e-06 55.8 36 72.2
Zm00001eb137290 Zea mays HOM05D000625 ORTHO05D000467 1.1e-06 55.8 36 72.2
Atru.chr6.3474 Acer truncatum HOM05D000625 ORTHO05D000467 1.4e-06 55.5 36 69.4
Ah.04g157720 Amaranthus hybridus HOM05D000625 ORTHO05D000467 1.4e-06 55.5 36 72.2
ATR0661G307 Amborella trichopoda HOM05D000625 ORTHO05D000467 1.4e-06 55.5 36 72.2
Ca_16988_v3 Cicer arietinum L. HOM05D000625 ORTHO05D000467 1.4e-06 55.5 36 69.4
Dinv28774 Davidia involucrata HOM05D000625 ORTHO05D000467 1.4e-06 55.5 34 76.5
SEGI_13963 Sequoiadendron giganteum HOM05D000625 ORTHO05D000467 1.4e-06 55.5 36 69.4
THA.LOC104815376 Tarenaya hassleriana HOM05D000625 ORTHO05D000467 1.4e-06 55.5 36 72.2
TPR.G33561 Trifolium pratense HOM05D000625 ORTHO05D000467 1.4e-06 55.5 36 69.4
Actinidia29483 Actinidia chinensis HOM05D000625 ORTHO05D000467 1.8e-06 55.1 36 72.2
CAN.G874.49 Capsicum annuum HOM05D000625 ORTHO05D000467 1.8e-06 55.1 36 69.4
Dinv14665 Davidia involucrata HOM05D000625 ORTHO05D000467 1.8e-06 55.1 36 72.2
ECA248G2142 Erigeron canadensis HOM05D000625 ORTHO05D000467 1.8e-06 55.1 36 69.4
Lalb_Chr08g0238141 Lupinus albus HOM05D000625 ORTHO05D000467 1.8e-06 55.1 36 69.4
Phvul.009G153800 Phaseolus vulgaris HOM05D000625 ORTHO05D000467 1.8e-06 55.1 36 72.2
Sc06g0005390 Simmondsia chinensis HOM05D000625 ORTHO05D000467 1.8e-06 55.1 36 72.2
SEGI_10640 Sequoiadendron giganteum HOM05D000625 ORTHO05D000467 2.3e-06 54.7 36 66.7
Solyc06g082840.4 Solanum lycopersicum HOM05D000625 ORTHO05D000467 2.3e-06 54.7 36 69.4
Sopen06g034200 Solanum pennellii HOM05D000625 ORTHO05D000467 2.3e-06 54.7 36 69.4
Zm00001eb410220 Zea mays HOM05D000625 ORTHO05D000467 2.3e-06 54.7 36 69.4
Aqoxy4G01899 Aquilegia oxysepala HOM05D000625 ORTHO05D000467 3.1e-06 54.3 36 72.2
arahy.Tifrunner.gnm1.ann1.M6K5A0 Arachis hypogaea HOM05D000625 ORTHO05D000467 3.1e-06 54.3 36 69.4
Thhalv10024361m.g Eutrema salsugineum HOM05D000625 ORTHO05D000467 3.1e-06 54.3 36 72.2
HanXRQChr06g0182461 Helianthus annuus HOM05D000625 ORTHO05D000467 3.1e-06 54.3 36 69.4
Sabra02G0168800 Salix brachista HOM05D000625 ORTHO05D000467 3.1e-06 54.3 36 72.2
Sp7g09310 Schrenkiella parvula HOM05D000625 ORTHO05D000467 3.1e-06 54.3 36 72.2
Peaxi162Scf00390g00124 Petunia axillaris HOM05D000625 ORTHO05D000467 4.0e-06 53.9 36 72.2
Sp7g09210 Schrenkiella parvula HOM05D000625 ORTHO05D000467 4.0e-06 53.9 36 75.0
Sed0004263 Sechium edule HOM05D000625 ORTHO05D000467 4.0e-06 53.9 36 69.4
THA.LOC104802636 Tarenaya hassleriana HOM05D000625 ORTHO05D000467 4.0e-06 53.9 36 69.4
BcaB02g08218 Brassica carinata HOM05D000625 ORTHO05D000467 5.2e-06 53.5 36 72.2
BcaB02g08260 Brassica carinata HOM05D000625 ORTHO05D000467 5.2e-06 53.5 36 72.2
AUR62000529 Chenopodium quinoa HOM05D000625 ORTHO05D000467 5.2e-06 53.5 36 69.4
AUR62006876 Chenopodium quinoa HOM05D000625 ORTHO05D000467 5.2e-06 53.5 36 69.4
Psat7g045320 Pisum sativum HOM05D000625 ORTHO05D000467 5.2e-06 53.5 44 59.1
Actinidia11649 Actinidia chinensis HOM05D000625 ORTHO05D000467 6.8e-06 53.1 32 78.1
Dinv27275 Davidia involucrata HOM05D000625 ORTHO05D000467 6.8e-06 53.1 36 69.4
ECA236G3811 Erigeron canadensis HOM05D000625 ORTHO05D000467 6.8e-06 53.1 36 69.4
Sopen02g029730 Solanum pennellii HOM05D000625 ORTHO05D000467 6.8e-06 53.1 36 66.7
PGSC0003DMG400003516 Solanum tuberosum HOM05D000625 ORTHO05D000467 6.8e-06 53.1 36 66.7
MSTRG.12730 Avicennia marina HOM05D000625 ORTHO05D000467 8.9e-06 52.8 36 66.7
Migut.N00693 Erythranthe guttata HOM05D000625 ORTHO05D000467 8.9e-06 52.8 36 69.4
unitig_0.g426 Utricularia gibba HOM05D000625 ORTHO05D000467 8.9e-06 52.8 36 69.4


User provided reference genes

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