Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01001741001 Vitis vinifera HOM05D000473 ORTHO05D006020 1.0e-38 162.9 83 100.0
GSVIVG01003360001 Vitis vinifera HOM05D000473 ORTHO05D006020 1.0e-38 162.9 83 100.0
GSVIVG01026668001 Vitis vinifera HOM05D000473 ORTHO05D006020 1.0e-38 162.9 83 100.0
GSVIVG01038662001 Vitis vinifera HOM05D000473 ORTHO05D006020 1.4e-32 142.5 72 100.0
Manes.01G044400 Manihot esculenta HOM05D000473 ORTHO05D006020 1.5e-29 132.5 72 91.7
Potri.012G007300 Populus trichocarpa HOM05D000473 ORTHO05D006020 1.5e-29 132.5 72 90.3
Dinv17290 Davidia involucrata HOM05D000473 ORTHO05D006020 3.3e-29 131.3 72 88.9
SGA_v2.0_scaffold18G08479 Striga asiatica HOM05D000473 ORTHO05D006020 7.4e-29 130.2 72 86.1
Dinv29202 Davidia involucrata HOM05D000473 ORTHO05D006020 9.7e-29 129.8 72 88.9
Nitab4.5_0000021g0060 Nicotiana tabacum HOM05D000473 ORTHO05D006020 9.7e-29 129.8 72 88.9
Nitab4.5_0004654g0030 Nicotiana tabacum HOM05D000473 ORTHO05D006020 9.7e-29 129.8 72 88.9
Peaxi162Scf01447g00016 Petunia axillaris HOM05D000473 ORTHO05D006020 1.3e-28 129.4 72 88.9
Thecc.03G210200 Theobroma cacao HOM05D000473 ORTHO05D006020 1.3e-28 129.4 72 87.5
COL.COLO4_14384 Corchorus olitorius HOM05D000473 ORTHO05D006020 2.2e-28 128.6 72 87.5
Sabra12G0004300 Salix brachista HOM05D000010 ORTHO05D006020 2.2e-28 128.6 88 75.0
Ah.07g204570 Amaranthus hybridus HOM05D000473 ORTHO05D006020 2.8e-28 128.3 72 84.7
Atru.chr12.2486 Acer truncatum HOM05D000473 ORTHO05D006020 3.7e-28 127.9 72 87.5
EL10Ac3g05152 Beta vulgaris HOM05D000473 ORTHO05D006020 3.7e-28 127.9 72 86.1
Sabra12G0008800 Salix brachista HOM05D000010 ORTHO05D006020 3.7e-28 127.9 72 86.1
Sabra15G0002600 Salix brachista HOM05D000473 ORTHO05D006020 3.7e-28 127.9 72 86.1
Gohir.A12G245500 Gossypium hirsutum HOM05D000473 ORTHO05D006020 4.8e-28 127.5 72 86.1
Gohir.D12G246300 Gossypium hirsutum HOM05D000473 ORTHO05D006020 4.8e-28 127.5 72 86.1
Gorai.008G263900 Gossypium raimondii HOM05D000473 ORTHO05D006020 4.8e-28 127.5 72 86.1
Rhsim03G0216900 Rhododendron simsii HOM05D000473 ORTHO05D006020 4.8e-28 127.5 72 86.1
Duzib084G0795 Durio zibethinus HOM05D000473 ORTHO05D006020 6.3e-28 127.1 72 86.1
Oeu037982.1 Olea europaea HOM05D000473 ORTHO05D006020 6.3e-28 127.1 72 84.7
Potri.015G003900 Populus trichocarpa HOM05D000473 ORTHO05D006020 8.2e-28 126.7 72 84.7
PGR042G1852 Punica granatum HOM05D000473 ORTHO05D006020 8.2e-28 126.7 72 86.1
Nn3g18762 Nelumbo nucifera HOM05D000473 ORTHO05D006020 1.4e-27 125.9 74 87.8
Prupe.2G320300 Prunus persica HOM05D000473 ORTHO05D006020 1.4e-27 125.9 71 87.3
Sopen03g021830 Solanum pennellii HOM05D000473 ORTHO05D006020 1.4e-27 125.9 72 86.1
PGSC0003DMG400000556 Solanum tuberosum HOM05D000473 ORTHO05D006020 1.4e-27 125.9 72 86.1
FAN10G3144 Fragaria x ananassa HOM05D000473 ORTHO05D006020 1.8e-27 125.6 72 84.7
Actinidia34277 Actinidia chinensis HOM05D000473 ORTHO05D006020 2.4e-27 125.2 72 84.7
Migut.F00138 Erythranthe guttata HOM05D000473 ORTHO05D006020 2.4e-27 125.2 72 84.7
FAN03G0590 Fragaria x ananassa HOM05D000473 ORTHO05D006020 2.4e-27 125.2 72 84.7
vmacro06455 Vaccinium macrocarpon HOM05D000473 ORTHO05D006020 2.4e-27 125.2 72 84.7
Hund09726 Selenicereus undatus HOM05D000473 ORTHO05D006020 3.1e-27 124.8 72 86.1
MD01G1229700 Malus domestica HOM05D000473 ORTHO05D006020 4.1e-27 124.4 72 84.7
TAR629G1572 Trochodendron aralioides HOM05D000473 ORTHO05D006020 4.1e-27 124.4 72 83.3
FAN01G1919 Fragaria x ananassa HOM05D000473 ORTHO05D006020 5.3e-27 124.0 72 84.7
RcHm_v2.0_Chr1g0330391 Rosa chinensis HOM05D000473 ORTHO05D006020 5.3e-27 124.0 72 81.9
Actinidia08708 Actinidia chinensis HOM05D000473 ORTHO05D006020 7.0e-27 123.6 72 83.3
CAN.G303.42 Capsicum annuum HOM05D000473 ORTHO05D006020 7.0e-27 123.6 72 84.7
Cpa.g.sc3.167 Carica papaya HOM05D000473 ORTHO05D006020 7.0e-27 123.6 72 80.6
AUR62005969 Chenopodium quinoa HOM05D000473 ORTHO05D006020 7.0e-27 123.6 72 83.3
AUR62028101 Chenopodium quinoa HOM05D000473 ORTHO05D006020 7.0e-27 123.6 72 83.3
Gohir.1Z049539 Gossypium hirsutum HOM05D000473 ORTHO05D006020 7.0e-27 123.6 72 83.3
Gohir.D04G000025 Gossypium hirsutum HOM05D000473 ORTHO05D006020 7.0e-27 123.6 72 83.3
Gohir.D04G000400 Gossypium hirsutum HOM05D000473 ORTHO05D006020 7.0e-27 123.6 72 83.3
Gorai.012G001300 Gossypium raimondii HOM05D000473 ORTHO05D006020 7.0e-27 123.6 72 83.3
MSTRG.8600 Avicennia marina HOM05D000473 ORTHO05D006020 9.1e-27 123.2 72 81.9
FvH4_7g33060 Fragaria vesca HOM05D000473 ORTHO05D006020 9.1e-27 123.2 72 84.7
Nn1g00470 Nelumbo nucifera HOM05D000473 ORTHO05D006020 9.1e-27 123.2 72 83.3
RcHm_v2.0_Chr1g0383071 Rosa chinensis HOM05D000473 ORTHO05D006020 9.1e-27 123.2 72 81.9
CSS0030649 Camellia sinensis var. sinensis HOM05D000473 ORTHO05D006020 1.2e-26 122.9 72 83.3
Duzib205G0264 Durio zibethinus HOM05D000473 ORTHO05D006020 1.2e-26 122.9 72 80.6
Glyma.02G222600 Glycine max HOM05D000473 ORTHO05D006020 1.2e-26 122.9 72 83.3
Glyma.14G189500 Glycine max HOM05D000473 ORTHO05D006020 1.2e-26 122.9 72 83.3
DCAR_020384 Daucus carota HOM05D000473 ORTHO05D006020 1.6e-26 122.5 72 83.3
Solyc03g080100.4 Solanum lycopersicum HOM05D000473 ORTHO05D006020 1.6e-26 122.5 72 83.3
GSVIVG01005642001 Vitis vinifera HOM05D000473 ORTHO05D006020 1.6e-26 122.5 62 100.0
VMungo0647G1015 Vigna mungo HOM05D000473 ORTHO05D006020 2.6e-26 121.7 72 83.3
Haze_00309 Corylus avellana HOM05D000473 ORTHO05D006020 5.9e-26 120.6 72 81.9
Hma1.2p1_0094F.1_g047480 Hydrangea macrophylla HOM05D000473 ORTHO05D006020 5.9e-26 120.6 72 80.6
LjContig00155g0027148 Lotus japonicus HOM05D000473 ORTHO05D006020 5.9e-26 120.6 72 81.9
Lalb_Chr10g0103101 Lupinus albus HOM05D000473 ORTHO05D006020 5.9e-26 120.6 72 81.9
Phvul.008G189300 Phaseolus vulgaris HOM05D000473 ORTHO05D006020 5.9e-26 120.6 72 81.9
Cfa016146 Carpinus fangiana HOM05D000617 ORTHO05D000478 7.7e-26 120.2 72 81.9
Ca_03309_v3 Cicer arietinum L. HOM05D000473 ORTHO05D006020 7.7e-26 120.2 72 81.9
Medtr5g069180 Medicago truncatula HOM05D000473 ORTHO05D006020 7.7e-26 120.2 72 81.9
arahy.Tifrunner.gnm1.ann1.2S9XG1 Arachis hypogaea HOM05D000473 ORTHO05D006020 1.3e-25 119.4 72 81.9
arahy.Tifrunner.gnm1.ann1.R3RT9K Arachis hypogaea HOM05D000473 ORTHO05D006020 1.3e-25 119.4 72 81.9
MD07G1301700 Malus domestica HOM05D000473 ORTHO05D006020 1.3e-25 119.4 72 83.3
Psat2g061200 Pisum sativum HOM05D000473 ORTHO05D006020 1.3e-25 119.4 72 80.6
BcaB07g29915 Brassica carinata HOM05D000473 ORTHO05D006020 1.7e-25 119.0 72 77.8
Lalb_Chr17g0344851 Lupinus albus HOM05D000473 ORTHO05D006020 2.2e-25 118.6 72 80.6
Sc13g0010560 Simmondsia chinensis HOM05D000473 ORTHO05D006020 2.2e-25 118.6 72 77.8
A02p40210 Brassica napus HOM05D000473 ORTHO05D006020 2.9e-25 118.2 72 77.8
BraA02t08989Z Brassica rapa HOM05D000473 ORTHO05D006020 2.9e-25 118.2 72 77.8
CiPaw.06G039600 Carya illinoinensis HOM05D000473 ORTHO05D006020 2.9e-25 118.2 72 80.6
BcaNung01244 Brassica carinata HOM05D000473 ORTHO05D006020 3.8e-25 117.9 72 77.8
Ca_16790_v3 Cicer arietinum L. HOM05D000473 ORTHO05D006020 3.8e-25 117.9 78 75.6
Ca_16806_v3 Cicer arietinum L. HOM05D000473 ORTHO05D006020 3.8e-25 117.9 78 75.6
Sp2g22800 Schrenkiella parvula HOM05D000473 ORTHO05D006020 3.8e-25 117.9 72 76.4
BcaNung02011 Brassica carinata HOM05D000473 ORTHO05D006020 5.0e-25 117.5 72 76.4
A06p35360 Brassica napus HOM05D000473 ORTHO05D006020 5.0e-25 117.5 72 76.4
C07p43130 Brassica napus HOM05D000473 ORTHO05D006020 5.0e-25 117.5 72 76.4
BolC7t44840H Brassica oleracea HOM05D000473 ORTHO05D006020 5.0e-25 117.5 72 76.4
BraA06t26461Z Brassica rapa HOM05D000473 ORTHO05D006020 5.0e-25 117.5 72 76.4
CANSAT21G0472 Cannabis sativa HOM05D000473 ORTHO05D006020 5.0e-25 117.5 70 81.4
CiPaw.05G206300 Carya illinoinensis HOM05D000473 ORTHO05D006020 5.0e-25 117.5 71 81.7
THA.LOC104798990 Tarenaya hassleriana HOM05D000473 ORTHO05D006020 5.0e-25 117.5 72 77.8
C02p60200 Brassica napus HOM05D000473 ORTHO05D006020 8.5e-25 116.7 72 76.4
BcaC03g17959 Brassica carinata HOM05D000473 ORTHO05D006020 1.1e-24 116.3 72 76.4
Lalb_Chr04g0252491 Lupinus albus HOM05D000473 ORTHO05D006020 1.1e-24 116.3 72 80.6
Peaxi162Scf00815g00020 Petunia axillaris HOM05D000473 ORTHO05D006020 1.1e-24 116.3 72 83.3
QL09p006741 Quercus lobata HOM05D000473 ORTHO05D006020 1.1e-24 116.3 72 79.2
GSVIVG01004734001 Vitis vinifera HOM05D000473 ORTHO05D006020 1.1e-24 116.3 62 95.2
AL6G36180 Arabidopsis lyrata HOM05D000473 ORTHO05D006020 1.5e-24 115.9 73 78.1
TWI23G0704 Tripterygium wilfordii HOM05D000473 ORTHO05D006020 1.5e-24 115.9 72 79.2
Aqoxy5G04365 Aquilegia oxysepala HOM05D000473 ORTHO05D006020 1.9e-24 115.5 72 75.0
BolC2t12071H Brassica oleracea HOM05D000473 ORTHO05D006020 1.9e-24 115.5 72 76.4
ECA233G4868 Erigeron canadensis HOM05D000473 ORTHO05D006020 2.5e-24 115.2 72 76.4
Psat5g070960 Pisum sativum HOM05D000473 ORTHO05D006020 2.5e-24 115.2 72 79.2
Lsat_1_v5_gn_8_3921 Lactuca sativa HOM05D000617 ORTHO05D000478 4.2e-24 114.4 72 76.4
PSO063G4186 Papaver somniferum HOM05D000473 ORTHO05D006020 4.2e-24 114.4 72 75.0
Carub.0006s2244 Capsella rubella HOM05D000473 ORTHO05D006020 5.5e-24 114.0 73 75.3
CARHR188870 Cardamine hirsuta HOM05D000473 ORTHO05D006020 5.5e-24 114.0 73 75.3
Thhalv10004630m.g Eutrema salsugineum HOM05D000473 ORTHO05D006020 5.5e-24 114.0 73 75.3
Medtr3g093020 Medicago truncatula HOM05D000473 ORTHO05D006020 5.5e-24 114.0 72 77.8
PSO782G5162 Papaver somniferum HOM05D000473 ORTHO05D006020 9.4e-24 113.2 72 75.0
AT5G24580 Arabidopsis thaliana HOM05D000473 ORTHO05D006020 1.2e-23 112.8 73 75.3
Cc02_g00720 Coffea canephora HOM05D000473 ORTHO05D006020 1.2e-23 112.8 72 83.3
Lj1g0019242 Lotus japonicus HOM05D000473 ORTHO05D006020 2.7e-23 111.7 72 76.4
Lj3A893T78 Lonicera japonica HOM05D000473 ORTHO05D006020 4.7e-23 110.9 72 79.2
Eucgr.K00045 Eucalyptus grandis HOM05D000473 ORTHO05D006020 6.1e-23 110.5 72 70.8
arahy.Tifrunner.gnm1.ann1.ZWX0IX Arachis hypogaea HOM05D000473 ORTHO05D006020 1.4e-22 109.4 72 76.4
Lalb_Chr04g0252481 Lupinus albus HOM05D000473 ORTHO05D006020 1.8e-22 109.0 71 76.1
TPR.G33377 Trifolium pratense HOM05D000473 ORTHO05D006020 1.8e-22 109.0 72 75.0
HanXRQChr08g0225901 Helianthus annuus HOM05D000473 ORTHO05D006020 3.0e-22 108.2 72 72.2
Aa31LG11G3810 Aethionema arabicum HOM05D000473 ORTHO05D006020 4.0e-22 107.8 72 66.7
arahy.Tifrunner.gnm1.ann1.RVXC58 Arachis hypogaea HOM05D000473 ORTHO05D006020 4.0e-22 107.8 72 75.0
Glyma.15G198801 Glycine max HOM05D000473 ORTHO05D006020 1.1e-21 106.3 73 72.6
Oeu017370.1 Olea europaea HOM05D000473 ORTHO05D006020 1.1e-21 106.3 72 72.2
PGR142G3498 Punica granatum HOM05D000473 ORTHO05D006020 5.7e-21 104.0 72 68.1
Phvul.009G038800 Phaseolus vulgaris HOM05D000473 ORTHO05D006020 1.3e-20 102.8 72 68.1
Lj1g0001509 Lotus japonicus HOM05D000473 ORTHO05D006020 1.7e-20 102.4 72 73.6
Solyc06g073070.2 Solanum lycopersicum HOM05D000473 ORTHO05D006020 6.3e-20 100.5 88 63.6
Sopen06g029420 Solanum pennellii HOM05D000473 ORTHO05D006020 1.4e-19 99.4 88 61.4
Glyma.04G227000 Glycine max HOM05D000473 ORTHO05D006020 1.8e-19 99.0 73 71.2
Sc19g0000490 Simmondsia chinensis HOM05D000473 ORTHO05D006020 3.1e-19 98.2 70 71.4
CAN.G65.150 Capsicum annuum HOM05D000473 ORTHO05D006020 4.1e-19 97.8 72 69.4
Nitab4.5_0002895g0010 Nicotiana tabacum HOM05D000473 ORTHO05D006020 9.1e-19 96.7 72 72.2
VMungo1309G2081 Vigna mungo HOM05D000473 ORTHO05D006020 1.2e-18 96.3 80 63.8
ATR0579G024 Amborella trichopoda HOM05D000473 ORTHO05D006020 1.6e-18 95.9 73 64.4
CDE04G2470 Ceratophyllum demersum HOM05D000473 ORTHO05D006020 1.6e-18 95.9 73 71.2
Nn2g13643 Nelumbo nucifera HOM05D000473 ORTHO05D006020 1.3e-17 92.8 64 76.6
CDE12G0809 Ceratophyllum demersum HOM05D000473 ORTHO05D006020 8.8e-14 80.1 70 64.3
Sed0009512 Sechium edule HOM05D000473 ORTHO05D006020 1.2e-13 79.7 74 59.5
Lj1A1029T64 Lonicera japonica HOM05D000473 ORTHO05D006020 1.5e-13 79.3 72 59.7
Os03g0861400 Oryza sativa ssp. japonica HOM05D000473 ORTHO05D006020 3.1e-11 71.6 81 50.6
HPP92_022292 Vanilla planifolia HOM05D000473 ORTHO05D006020 2.0e-10 68.9 70 48.6
Cc09_g00430 Coffea canephora HOM05D000473 ORTHO05D001433 8.8e-06 53.5 74 41.9


User provided reference genes

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