Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 6.7e-248 860.1 408 100.0
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 5.0e-187 657.9 402 77.9
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 8.6e-187 657.1 402 77.9
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 4.3e-186 654.8 402 77.6
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 2.1e-185 652.5 397 76.1
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 3.6e-185 651.7 403 76.7
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 6.2e-185 651.0 406 75.6
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 1.4e-184 649.8 433 71.6
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 6.8e-184 647.5 411 74.2
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 6.8e-184 647.5 406 75.4
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 2.0e-183 646.0 406 76.1
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 2.0e-183 646.0 406 74.4
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 4.9e-182 641.3 407 73.2
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 1.1e-181 640.2 403 75.9
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 1.1e-181 640.2 396 75.5
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 1.1e-181 640.2 406 75.4
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 3.2e-181 638.6 403 74.9
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 7.0e-181 637.5 410 74.1
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 9.2e-181 637.1 404 73.8
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 9.2e-181 637.1 409 72.9
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 1.6e-180 636.3 418 72.0
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 2.1e-180 636.0 380 78.2
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 2.7e-180 635.6 407 73.0
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 2.7e-180 635.6 410 73.4
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 3.5e-180 635.2 411 73.0
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 3.5e-180 635.2 380 76.8
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 4.6e-180 634.8 391 73.9
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 4.6e-180 634.8 410 73.4
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 6.0e-180 634.4 420 72.1
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 1.7e-179 632.9 409 72.4
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 2.3e-179 632.5 373 76.7
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 3.0e-179 632.1 388 76.3
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 5.1e-179 631.3 382 76.2
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 1.9e-178 629.4 386 75.4
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 3.3e-178 628.6 405 72.1
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 2.1e-177 625.9 411 71.8
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 4.7e-177 624.8 394 73.9
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 2.3e-176 622.5 406 72.7
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 4.0e-176 621.7 378 75.4
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 8.9e-176 620.5 375 76.5
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 8.9e-176 620.5 404 72.3
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 8.9e-176 620.5 402 71.1
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 1.2e-175 620.2 382 76.7
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 3.4e-175 618.6 437 68.6
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 4.4e-175 618.2 395 73.2
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 5.8e-175 617.8 396 73.7
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 9.9e-175 617.1 405 71.9
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 2.9e-174 615.5 411 72.3
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 3.7e-174 615.1 409 72.4
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 1.9e-173 612.8 378 74.6
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 4.1e-173 611.7 394 73.1
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 7.1e-173 610.9 401 72.8
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 1.6e-172 609.8 377 74.3
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 2.1e-172 609.4 391 70.8
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 1.3e-171 606.7 445 67.4
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 5.1e-171 604.7 400 70.5
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 5.1e-171 604.7 404 69.6
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 6.6e-171 604.4 404 70.3
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 1.5e-170 603.2 371 74.7
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 1.9e-170 602.8 394 69.5
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 2.5e-170 602.4 383 73.6
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 3.3e-170 602.1 404 69.6
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 4.3e-170 601.7 404 69.1
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 5.6e-170 601.3 401 68.6
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 7.3e-170 600.9 401 69.3
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 7.3e-170 600.9 405 69.6
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 1.6e-169 599.7 383 73.1
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 3.6e-169 598.6 398 71.4
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 3.6e-169 598.6 425 70.6
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 3.6e-169 598.6 404 71.5
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 2.4e-168 595.9 355 77.5
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 5.2e-168 594.7 407 69.0
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 5.8e-167 591.3 384 70.8
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 5.8e-167 591.3 384 70.8
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 1.7e-166 589.7 401 71.1
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 1.7e-166 589.7 390 70.8
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 1.1e-165 587.0 395 70.6
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 5.4e-165 584.7 404 67.1
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 7.1e-165 584.3 405 67.2
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 1.9e-162 576.2 413 69.0
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 3.3e-162 575.5 339 78.8
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 2.1e-161 572.8 406 69.0
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 6.2e-161 571.2 419 67.8
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 2.6e-159 565.8 383 69.5
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 1.0e-155 553.9 355 72.4
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 6.6e-155 551.2 413 64.6
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 7.6e-151 537.7 387 66.9
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 9.6e-146 520.8 395 62.0
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 3.7e-145 518.8 408 64.0
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 1.6e-140 503.4 407 62.7
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 1.0e-139 500.7 399 58.6
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 1.1e-138 497.3 379 59.6
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 3.3e-138 495.7 339 67.0
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 7.6e-135 484.6 397 62.0
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 4.9e-134 481.9 289 78.5
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 2.3e-131 473.0 312 71.2
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 6.9e-128 461.5 300 73.7
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 2.0e-127 459.9 301 73.8
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 4.2e-125 452.2 395 58.2
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 9.4e-125 451.1 364 57.4
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 2.6e-114 416.4 365 52.9
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 5.9e-111 405.2 434 47.9
Eucgr.L01396 Eucalyptus grandis HOM05D006195 ORTHO05D007710 1.8e-99 367.1 251 70.1
Potri.004G034600 Populus trichocarpa HOM05D006195 ORTHO05D007710 6.1e-92 342.0 245 66.9
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 1.3e-86 324.3 277 55.2
HPP92_018057 Vanilla planifolia HOM05D006195 ORTHO05D007710 2.3e-86 323.6 257 60.7
TPR.G37128 Trifolium pratense HOM05D006195 ORTHO05D007710 9.5e-85 318.2 179 80.4
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 4.7e-84 315.8 406 42.1
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 5.2e-83 312.4 448 43.5
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.0e-78 298.1 167 80.8
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.0e-78 298.1 167 80.8
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 5.0e-78 295.8 391 40.7
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 2.5e-69 266.9 132 94.7
SalBow1G5137 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.0e-66 257.3 146 80.1
Dinv18994 Davidia involucrata HOM05D006195 ORTHO05D007710 1.2e-58 231.5 213 57.3
Manes.10G084901 Manihot esculenta HOM05D006195 ORTHO05D007710 1.9e-53 214.2 127 78.0
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.6e-44 184.5 99 83.8
PRCOL_00004057 Prasinoderma coloniale HOM05D006195 ORTHO05D007710 6.2e-44 182.6 298 34.9
SHI02125 Sapria himalayana HOM05D006195 ORTHO05D007710 2.4e-43 180.6 101 77.2
Nitab4.5_0003834g0010 Nicotiana tabacum HOM05D006195 ORTHO05D007710 1.0e-38 165.2 93 79.6
SalBow1G7985 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.3e-38 164.1 115 69.6
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 8.7e-38 162.2 102 76.5
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 1.2e-34 151.8 89 75.3
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 1.2e-31 141.7 101 66.3
SEGI_17138 Sequoiadendron giganteum HOM05D006195 ORTHO05D007710 2.1e-28 131.0 80 67.5
HPP92_018063 Vanilla planifolia HOM05D006195 ORTHO05D007710 2.8e-28 130.6 152 49.3
SHI02124 Sapria himalayana HOM05D006195 ORTHO05D007710 7.1e-24 115.9 203 38.4
AL117U10020 Arabidopsis lyrata HOM05D064442 ORTHO05D011622 4.8e-20 103.2 114 49.1
CSS0013325 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 2.5e-13 80.9 70 55.7
Pp3c2_19830 Physcomitrium patens HOM05D002999 ORTHO05D003137 2.2e-09 67.8 349 22.6
AagrBONN_evm.TU.Sc2ySwM_228.3731 Anthoceros agrestis HOM05D002999 ORTHO05D003137 8.5e-09 65.9 235 23.4
Pp3c10_3720 Physcomitrium patens HOM05D002999 ORTHO05D003137 8.5e-09 65.9 349 22.6
Zm00001eb052290 Zea mays HOM05D003825 ORTHO05D004491 2.7e-07 60.8 242 20.2
C03p85750 Brassica napus HOM05D003825 ORTHO05D004491 3.6e-07 60.5 243 21.0
BolC3t20866H Brassica oleracea HOM05D003825 ORTHO05D004491 3.6e-07 60.5 243 21.0
TAR376G0761 Trochodendron aralioides HOM05D003825 ORTHO05D004491 4.6e-07 60.1 250 21.6
A08p16790 Brassica napus HOM05D003825 ORTHO05D004491 7.9e-07 59.3 243 21.0
BraA08t33644Z Brassica rapa HOM05D003825 ORTHO05D004491 7.9e-07 59.3 243 21.0
PSO675G6008 Papaver somniferum HOM05D003825 ORTHO05D004491 7.9e-07 59.3 247 21.5
BraA03t15368Z Brassica rapa HOM05D003825 ORTHO05D004491 1.0e-06 58.9 243 23.0
CARHR242280 Cardamine hirsuta HOM05D003825 ORTHO05D004491 1.0e-06 58.9 277 21.3
A03p62930 Brassica napus HOM05D003825 ORTHO05D004491 1.8e-06 58.2 243 22.6
AUR62043984 Chenopodium quinoa HOM05D002999 ORTHO05D003137 1.8e-06 58.2 125 32.0
Pp3c1_22090 Physcomitrium patens HOM05D002999 ORTHO05D003137 1.8e-06 58.2 252 23.4
Hund05388 Selenicereus undatus HOM05D002999 ORTHO05D003137 1.8e-06 58.2 145 27.6
AT4G34460 Arabidopsis thaliana HOM05D003825 ORTHO05D004491 2.3e-06 57.8 248 21.8
C01p04290 Brassica napus HOM05D003825 ORTHO05D004491 2.3e-06 57.8 242 21.5
BolC1t00419H Brassica oleracea HOM05D003825 ORTHO05D004491 2.3e-06 57.8 244 21.7
AUR62011330 Chenopodium quinoa HOM05D003825 ORTHO05D004491 2.3e-06 57.8 219 19.6
AUR62016731 Chenopodium quinoa HOM05D003825 ORTHO05D004491 2.3e-06 57.8 219 19.6
Os03g0669200 Oryza sativa ssp. japonica HOM05D003825 ORTHO05D004491 2.3e-06 57.8 219 19.2
C07p60600 Brassica napus HOM05D003825 ORTHO05D004491 3.0e-06 57.4 243 22.6
BolC7t46489H Brassica oleracea HOM05D003825 ORTHO05D004491 3.0e-06 57.4 243 22.6
unitig_749.g14054 Utricularia gibba HOM05D002999 ORTHO05D003137 3.0e-06 57.4 150 29.3
A01p03980 Brassica napus HOM05D003825 ORTHO05D004491 3.9e-06 57.0 242 21.5
BraA01t00386Z Brassica rapa HOM05D003825 ORTHO05D004491 3.9e-06 57.0 242 21.5
Migut.M00121 Erythranthe guttata HOM05D001610 ORTHO05D001585 3.9e-06 57.0 232 25.9
Nitab4.5_0004238g0040 Nicotiana tabacum HOM05D002999 ORTHO05D003137 5.1e-06 56.6 114 31.6
Sp7g32260 Schrenkiella parvula HOM05D003825 ORTHO05D004491 5.1e-06 56.6 242 21.9
HPP92_013924 Vanilla planifolia HOM05D003825 ORTHO05D004491 8.8e-06 55.8 220 20.0


User provided reference genes

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