Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 3.3e-141 505.0 246 100.0
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.7e-60 236.9 129 90.7
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 7.0e-51 204.9 128 79.7
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 9.2e-51 204.5 128 79.7
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 3.5e-50 202.6 128 80.5
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 4.6e-50 202.2 136 75.0
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 1.3e-49 200.7 128 80.5
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 1.7e-49 200.3 128 78.9
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 1.7e-49 200.3 128 78.1
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 1.7e-49 200.3 128 78.1
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.7e-49 200.3 128 78.9
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 3.9e-49 199.1 128 78.1
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 3.9e-49 199.1 128 78.1
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 5.0e-49 198.7 128 78.1
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 6.6e-49 198.4 128 77.3
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 6.6e-49 198.4 128 77.3
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 6.6e-49 198.4 128 78.1
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 6.6e-49 198.4 128 77.3
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 8.6e-49 198.0 128 77.3
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 8.6e-49 198.0 128 77.3
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 8.6e-49 198.0 128 76.6
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 8.6e-49 198.0 128 77.3
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 1.1e-48 197.6 136 72.8
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 1.1e-48 197.6 128 77.3
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 1.1e-48 197.6 128 78.1
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.1e-48 197.6 128 76.6
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 1.5e-48 197.2 128 76.6
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 1.5e-48 197.2 128 76.6
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 1.5e-48 197.2 128 78.9
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 1.9e-48 196.8 128 78.1
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 1.9e-48 196.8 128 77.3
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 1.9e-48 196.8 128 77.3
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 2.5e-48 196.4 128 77.3
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 2.5e-48 196.4 128 77.3
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 2.5e-48 196.4 128 76.6
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 2.5e-48 196.4 128 75.8
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 2.5e-48 196.4 128 75.8
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 2.5e-48 196.4 128 76.6
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 2.5e-48 196.4 128 75.8
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 2.5e-48 196.4 128 75.8
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 2.5e-48 196.4 128 76.6
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 2.5e-48 196.4 128 76.6
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 3.3e-48 196.1 128 77.3
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 3.3e-48 196.1 128 75.8
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 3.3e-48 196.1 128 75.8
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.3e-48 196.1 128 77.3
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 4.3e-48 195.7 128 75.8
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 4.3e-48 195.7 128 75.0
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 4.3e-48 195.7 128 78.1
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 5.6e-48 195.3 128 76.6
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 5.6e-48 195.3 128 76.6
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 5.6e-48 195.3 128 76.6
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 7.3e-48 194.9 128 75.0
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 7.3e-48 194.9 128 75.8
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 9.5e-48 194.5 128 76.6
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 9.5e-48 194.5 138 71.0
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 9.5e-48 194.5 138 71.0
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 9.5e-48 194.5 128 76.6
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 9.5e-48 194.5 128 75.0
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 9.5e-48 194.5 128 75.8
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.2e-47 194.1 128 75.8
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 1.2e-47 194.1 128 75.8
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 1.2e-47 194.1 128 75.0
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 1.2e-47 194.1 128 74.2
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 1.2e-47 194.1 128 76.6
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 1.6e-47 193.7 128 74.2
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 1.6e-47 193.7 128 74.2
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 1.6e-47 193.7 128 74.2
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 1.6e-47 193.7 128 75.8
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 2.1e-47 193.4 128 74.2
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 2.1e-47 193.4 128 74.2
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 2.1e-47 193.4 128 74.2
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 2.8e-47 193.0 128 75.8
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 2.8e-47 193.0 128 76.6
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 3.6e-47 192.6 128 73.4
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 3.6e-47 192.6 131 75.6
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 3.6e-47 192.6 131 75.6
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 4.7e-47 192.2 128 74.2
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 6.2e-47 191.8 128 74.2
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 6.2e-47 191.8 128 75.0
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 8.1e-47 191.4 120 80.0
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 1.1e-46 191.0 128 74.2
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 1.1e-46 191.0 128 75.8
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.4e-46 190.7 128 74.2
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.8e-46 190.3 136 69.9
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 1.8e-46 190.3 128 74.2
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 3.1e-46 189.5 128 73.4
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 3.1e-46 189.5 128 73.4
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 4.0e-46 189.1 120 79.2
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 4.0e-46 189.1 128 73.4
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 5.2e-46 188.7 128 74.2
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 8.9e-46 188.0 128 70.3
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 8.9e-46 188.0 128 71.9
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 8.9e-46 188.0 128 71.9
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 1.2e-45 187.6 128 72.7
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 2.0e-45 186.8 128 72.7
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 3.4e-45 186.0 128 73.4
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 3.4e-45 186.0 128 71.9
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 4.4e-45 185.7 128 72.7
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 4.4e-45 185.7 128 72.7
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 4.4e-45 185.7 128 72.7
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 5.8e-45 185.3 128 72.7
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 5.8e-45 185.3 128 73.4
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 7.5e-45 184.9 128 71.9
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 7.5e-45 184.9 128 71.9
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 7.5e-45 184.9 128 71.9
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 7.5e-45 184.9 128 71.9
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 7.5e-45 184.9 128 71.9
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 9.8e-45 184.5 128 71.9
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 9.8e-45 184.5 128 71.9
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 9.8e-45 184.5 128 72.7
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 9.8e-45 184.5 128 73.4
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 9.8e-45 184.5 128 71.9
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 1.3e-44 184.1 128 72.7
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 1.3e-44 184.1 128 72.7
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 1.3e-44 184.1 128 71.9
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.3e-44 184.1 128 71.9
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.9e-44 183.0 128 70.3
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 3.7e-44 182.6 128 70.3
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 3.7e-44 182.6 128 70.3
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 3.7e-44 182.6 128 71.1
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 4.9e-44 182.2 128 71.1
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 4.9e-44 182.2 128 69.5
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 4.9e-44 182.2 123 72.4
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 6.4e-44 181.8 128 71.1
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 1.1e-43 181.0 128 71.9
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 1.1e-43 181.0 128 71.9
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.1e-43 181.0 134 70.9
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 1.4e-43 180.6 128 70.3
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 1.9e-43 180.3 128 69.5
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 7.1e-43 178.3 128 69.5
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 7.1e-43 178.3 128 70.3
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 9.2e-43 177.9 128 70.3
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 1.6e-42 177.2 128 67.2
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 1.6e-42 177.2 128 67.2
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.6e-42 177.2 128 67.2
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 1.0e-41 174.5 128 69.5
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 1.7e-41 173.7 128 67.2
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 3.0e-41 172.9 128 65.6
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 1.1e-40 171.0 122 68.9
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.3e-40 169.5 128 68.8
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 8.1e-39 164.9 128 64.1
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 8.1e-39 164.9 128 64.1
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 3.1e-38 162.9 108 76.9
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 6.8e-38 161.8 108 75.9
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 4.7e-31 139.0 108 64.8
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 3.2e-27 126.3 92 71.7
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 4.6e-26 122.5 131 46.6
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 4.3e-24 115.9 138 44.2
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.6e-23 114.0 122 45.9
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.9e-20 103.2 70 74.3
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 6.4e-20 102.1 59 78.0
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 9.3e-19 98.2 94 58.5
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 9.3e-19 98.2 94 58.5
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 3.5e-18 96.3 94 57.4
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 3.5e-18 96.3 94 57.4
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 6.2e-15 85.5 64 65.6
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 3.1e-14 83.2 112 43.8
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.9e-11 73.9 67 55.2
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 1.8e-06 57.4 34 70.6
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 9.0e-06 55.1 51 62.7


User provided reference genes

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