Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01002723001 Vitis vinifera HOM05D006685 ORTHO05D008244 1.3e-99 366.3 181 100.0
CiPaw.02G011900 Carya illinoinensis HOM05D006685 ORTHO05D008244 1.5e-34 150.2 172 51.2
QL06p043714 Quercus lobata HOM05D006685 ORTHO05D008244 3.4e-34 149.1 142 57.7
Thecc.01G048300 Theobroma cacao HOM05D006685 ORTHO05D008244 1.3e-33 147.1 137 54.7
Prupe.7G141900 Prunus persica HOM05D006685 ORTHO05D008244 1.7e-33 146.7 151 57.6
Cfa004216 Carpinus fangiana HOM05D006685 ORTHO05D008244 6.4e-33 144.8 171 50.9
Dinv26751 Davidia involucrata HOM05D006685 ORTHO05D008244 4.1e-32 142.1 183 49.7
MD15G1276100 Malus domestica HOM05D006685 ORTHO05D008244 9.2e-32 141.0 155 52.3
Sp5g11730 Schrenkiella parvula HOM05D006685 ORTHO05D008244 9.2e-32 141.0 123 56.1
RcHm_v2.0_Chr2g0103811 Rosa chinensis HOM05D006685 ORTHO05D008244 1.2e-31 140.6 177 46.3
VMungo0251G1647 Vigna mungo HOM05D006685 ORTHO05D008244 1.2e-31 140.6 145 51.7
CANSAT01G2373 Cannabis sativa HOM05D006685 ORTHO05D008244 1.6e-31 140.2 138 54.3
Duzib187G0300 Durio zibethinus HOM05D006685 ORTHO05D008244 3.5e-31 139.0 137 55.5
FvH4_1g14850 Fragaria vesca HOM05D006685 ORTHO05D008244 3.5e-31 139.0 149 53.7
TPR.G30340 Trifolium pratense HOM05D006685 ORTHO05D008244 3.5e-31 139.0 164 50.6
Glyma.02G062800 Glycine max HOM05D006685 ORTHO05D008244 4.6e-31 138.7 157 52.2
FAN26G3106 Fragaria x ananassa HOM05D006685 ORTHO05D008244 6.0e-31 138.3 149 53.0
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 7.8e-31 137.9 150 52.0
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.0e-30 137.5 149 52.3
Gohir.A12G068800 Gossypium hirsutum HOM05D006685 ORTHO05D008244 1.3e-30 137.1 137 54.7
Gorai.008G072600 Gossypium raimondii HOM05D006685 ORTHO05D008244 1.3e-30 137.1 137 54.7
A01p24130 Brassica napus HOM05D006685 ORTHO05D008244 2.3e-30 136.3 156 48.7
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.3e-30 136.3 150 52.0
Phvul.003G248400 Phaseolus vulgaris HOM05D006685 ORTHO05D008244 2.3e-30 136.3 150 52.0
AT3G50430 Arabidopsis thaliana HOM05D006685 ORTHO05D008244 3.0e-30 136.0 154 50.6
COL.COLO4_11329 Corchorus olitorius HOM05D006685 ORTHO05D008244 3.0e-30 136.0 137 52.6
Lalb_Chr16g0388451 Lupinus albus HOM05D006685 ORTHO05D008244 3.0e-30 136.0 145 49.7
Medtr8g079100 Medicago truncatula HOM05D006685 ORTHO05D008244 3.0e-30 136.0 158 48.7
Gohir.D12G090400 Gossypium hirsutum HOM05D006685 ORTHO05D008244 3.9e-30 135.6 137 54.0
C01p29820 Brassica napus HOM05D006685 ORTHO05D008244 5.0e-30 135.2 154 48.1
FAN28G0437 Fragaria x ananassa HOM05D006685 ORTHO05D008244 5.0e-30 135.2 153 50.3
Hma1.2p1_0546F.1_g176210 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 5.0e-30 135.2 182 47.3
Actinidia36520 Actinidia chinensis HOM05D006685 ORTHO05D008244 8.6e-30 134.4 186 46.2
BraA01t02325Z Brassica rapa HOM05D006685 ORTHO05D008244 1.5e-29 133.7 146 49.3
Thhalv10010194m.g Eutrema salsugineum HOM05D006685 ORTHO05D008244 1.5e-29 133.7 123 53.7
MBI16_g19900_MAGBIO Magnolia biondii HOM05D006685 ORTHO05D008244 1.5e-29 133.7 175 49.1
CARHR159940 Cardamine hirsuta HOM05D006685 ORTHO05D008244 1.9e-29 133.3 131 52.7
AL5G30586 Arabidopsis lyrata HOM05D006685 ORTHO05D008244 3.3e-29 132.5 148 50.0
BolC1t02922H Brassica oleracea HOM05D006685 ORTHO05D008244 3.3e-29 132.5 144 48.6
Psat4g089520 Pisum sativum HOM05D006685 ORTHO05D008244 3.3e-29 132.5 158 47.5
Potri.005G133500 Populus trichocarpa HOM05D006685 ORTHO05D008244 3.3e-29 132.5 142 50.0
HanXRQChr12g0378291 Helianthus annuus HOM05D006685 ORTHO05D008244 4.3e-29 132.1 114 59.6
Sabra05G0107200 Salix brachista HOM05D006685 ORTHO05D008244 4.3e-29 132.1 139 51.8
Manes.13G130000 Manihot esculenta HOM05D006685 ORTHO05D008244 5.6e-29 131.7 142 50.0
Aa31LG4G18660 Aethionema arabicum HOM05D006685 ORTHO05D008244 2.1e-28 129.8 132 53.0
BcaB05g23218 Brassica carinata HOM05D006685 ORTHO05D008244 3.6e-28 129.0 123 54.5
CSS0018173 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 4.7e-28 128.6 193 45.6
TAR376G1120 Trochodendron aralioides HOM05D006685 ORTHO05D008244 4.7e-28 128.6 162 46.3
Lj4g0023849 Lotus japonicus HOM05D006685 ORTHO05D008244 1.4e-27 127.1 158 45.6
Atru.chr3.446 Acer truncatum HOM05D006685 ORTHO05D008244 1.8e-27 126.7 144 50.0
Eucgr.I01015 Eucalyptus grandis HOM05D006685 ORTHO05D008244 1.8e-27 126.7 129 54.3
Carub.0005s1677 Capsella rubella HOM05D006685 ORTHO05D008244 3.1e-27 125.9 131 50.4
Lsat_1_v5_gn_3_92360 Lactuca sativa HOM05D006685 ORTHO05D008244 3.1e-27 125.9 139 51.1
ECA246G1174 Erigeron canadensis HOM05D006685 ORTHO05D008244 8.9e-27 124.4 165 46.7
Aqoxy6G00915 Aquilegia oxysepala HOM05D006685 ORTHO05D008244 1.2e-26 124.0 137 53.3
CDE07G0460 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 1.2e-26 124.0 139 48.9
Nitab4.5_0001014g0040 Nicotiana tabacum HOM05D006685 ORTHO05D008244 2.0e-26 123.2 177 44.1
CAN.G836.36 Capsicum annuum HOM05D006685 ORTHO05D008244 4.4e-26 122.1 153 47.7
Haze_15195 Corylus avellana HOM05D006685 ORTHO05D008244 1.7e-25 120.2 176 43.8
Cc07_g05580 Coffea canephora HOM05D006685 ORTHO05D008244 2.9e-25 119.4 149 47.7
Peaxi162Scf00993g00018 Petunia axillaris HOM05D006685 ORTHO05D008244 2.9e-25 119.4 152 45.4
PGR044G2727 Punica granatum HOM05D006685 ORTHO05D008244 2.9e-25 119.4 147 47.6
PGR119G2375 Punica granatum HOM05D006685 ORTHO05D008244 4.9e-25 118.6 170 42.4
PGSC0003DMG402010073 Solanum tuberosum HOM05D006685 ORTHO05D008244 4.9e-25 118.6 151 46.4
DCAR_025691 Daucus carota HOM05D006685 ORTHO05D008244 8.3e-25 117.9 148 47.3
Nitab4.5_0000108g0340 Nicotiana tabacum HOM05D006685 ORTHO05D008244 1.1e-24 117.5 161 44.7
vmacro05297 Vaccinium macrocarpon HOM05D006685 ORTHO05D008244 2.4e-24 116.3 183 38.8
Hund16306 Selenicereus undatus HOM05D006685 ORTHO05D008244 9.2e-24 114.4 166 43.4
Sopen02g034940 Solanum pennellii HOM05D006685 ORTHO05D008244 2.1e-23 113.2 150 45.3
Oeu003945.1 Olea europaea HOM05D006685 ORTHO05D008244 2.7e-23 112.8 134 50.7
Migut.H00483 Erythranthe guttata HOM05D006685 ORTHO05D008244 4.6e-23 112.1 116 51.7
Sc03g0001280 Simmondsia chinensis HOM05D006685 ORTHO05D008244 6.0e-23 111.7 161 42.2
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 3.9e-22 109.0 143 46.2
AUR62001974 Chenopodium quinoa HOM05D006685 ORTHO05D008244 8.6e-22 107.8 149 43.6
RcHm_v2.0_Chr1g0329901 Rosa chinensis HOM05D006685 ORTHO05D008244 8.6e-22 107.8 167 41.3
ATR0733G107 Amborella trichopoda HOM05D006685 ORTHO05D008244 1.9e-21 106.7 173 39.3
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 2.5e-21 106.3 171 39.8
PSO541G3044 Papaver somniferum HOM05D006685 ORTHO05D008244 2.5e-21 106.3 172 40.7
Ca_22230_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 3.3e-21 105.9 126 50.0
Ca_22212_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 9.5e-21 104.4 123 51.2
ATR0733G174 Amborella trichopoda HOM05D006685 ORTHO05D008244 2.8e-20 102.8 136 41.9
Os07g0120700 Oryza sativa ssp. japonica HOM05D006685 ORTHO05D008244 6.2e-20 101.7 129 44.2
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 8.1e-20 101.3 138 46.4
Zm00001eb209640 Zea mays HOM05D006685 ORTHO05D008244 8.9e-19 97.8 134 42.5
Zm00001eb209650 Zea mays HOM05D006685 ORTHO05D008244 8.9e-19 97.8 134 42.5
CsaV3_2G016900 Cucumis sativus L. HOM05D006685 ORTHO05D008244 1.2e-18 97.4 174 34.5
FAN05G3710 Fragaria x ananassa HOM05D006685 ORTHO05D008244 9.9e-18 94.4 63 69.8
FAN08G2647 Fragaria x ananassa HOM05D006685 ORTHO05D008244 9.9e-18 94.4 63 69.8
ClCG02G012840 Citrullus lanatus HOM05D006685 ORTHO05D008244 1.3e-17 94.0 147 38.1
unitig_749.g14219 Utricularia gibba HOM05D006685 ORTHO05D008244 1.4e-16 90.5 157 38.9
AUR62003829 Chenopodium quinoa HOM05D006685 ORTHO05D008244 2.4e-16 89.7 150 40.0
Sed0001332 Sechium edule HOM05D006685 ORTHO05D008244 3.2e-16 89.4 145 36.6
SGA_v2.0_scaffold204G41611 Striga asiatica HOM05D006685 ORTHO05D008244 2.1e-15 86.7 135 39.3
Solyc02g090260.3 Solanum lycopersicum HOM05D006685 ORTHO05D008244 3.5e-15 85.9 133 42.1
Lj7A20T60 Lonicera japonica HOM05D006685 ORTHO05D008244 4.6e-15 85.5 89 55.1
THA.LOC104821263 Tarenaya hassleriana HOM05D006685 ORTHO05D008244 6.0e-15 85.1 99 48.5
MELO3C020890.2 Cucumis melo HOM05D006685 ORTHO05D008244 1.2e-12 77.4 147 36.7
MD06G1092300 Malus domestica HOM05D006685 ORTHO05D008244 1.4e-08 63.9 64 53.1
arahy.Tifrunner.gnm1.ann1.6LA5S9 Arachis hypogaea HOM05D002494 ORTHO05D002673 3.5e-07 59.3 30 83.3
arahy.Tifrunner.gnm1.ann1.G2N9P3 Arachis hypogaea HOM05D000296 ORTHO05D008244 3.5e-07 59.3 30 83.3
Pp3c3_30590 Physcomitrium patens HOM05D006685 ORTHO05D008244 4.6e-07 58.9 123 35.0


User provided reference genes

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