Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01002709001 Vitis vinifera HOM05D006441 ORTHO05D008203 3.0e-114 415.2 213 100.0
GSVIVG01002450001 Vitis vinifera HOM05D006441 ORTHO05D008203 4.8e-80 301.6 213 77.9
Dinv23055 Davidia involucrata HOM05D006441 ORTHO05D008203 6.3e-64 248.1 213 66.7
CSS0047485 Camellia sinensis var. sinensis HOM05D006441 ORTHO05D008203 1.2e-51 207.2 218 59.6
CSS0036817 Camellia sinensis var. sinensis HOM05D006441 ORTHO05D008203 1.4e-50 203.8 218 58.7
vmacro05378 Vaccinium macrocarpon HOM05D006441 ORTHO05D008203 8.8e-50 201.1 212 56.6
Rhsim10G0094400 Rhododendron simsii HOM05D006441 ORTHO05D008203 1.3e-48 197.2 213 56.8
Gorai.007G227000 Gossypium raimondii HOM05D006441 ORTHO05D008203 3.1e-47 192.6 230 53.5
Gohir.D11G211300 Gossypium hirsutum HOM05D006441 ORTHO05D008203 5.3e-47 191.8 230 53.5
Thecc.01G077600 Theobroma cacao HOM05D006441 ORTHO05D008203 6.5e-45 184.9 241 49.4
TAR628G0068 Trochodendron aralioides HOM05D006441 ORTHO05D008203 6.5e-45 184.9 214 54.7
Atru.chr3.1073 Acer truncatum HOM05D006441 ORTHO05D008203 4.2e-44 182.2 233 48.5
Cfa006781 Carpinus fangiana HOM05D006441 ORTHO05D008203 2.7e-43 179.5 221 53.4
Gohir.A11G211600 Gossypium hirsutum HOM05D006441 ORTHO05D008203 2.7e-43 179.5 230 52.2
Duzib147G0493 Durio zibethinus HOM05D006441 ORTHO05D008203 8.0e-43 177.9 240 48.3
Prupe.6G215400 Prunus persica HOM05D006441 ORTHO05D008203 1.0e-42 177.6 218 55.5
Ciclev10025205m.g Citrus clementina HOM05D006441 ORTHO05D008203 3.0e-42 176.0 227 52.0
QL06p038630 Quercus lobata HOM05D006441 ORTHO05D008203 5.2e-42 175.3 219 53.0
Actinidia36417 Actinidia chinensis HOM05D006441 ORTHO05D008203 1.2e-41 174.1 211 53.6
Cc07_g07440 Coffea canephora HOM05D006441 ORTHO05D008203 2.0e-41 173.3 211 52.6
LjContig00049g0002658 Lotus japonicus HOM05D006441 ORTHO05D008203 1.8e-39 166.8 220 50.9
Glyma.02G280500 Glycine max HOM05D006441 ORTHO05D008203 3.1e-39 166.0 225 50.7
TWI53G1431 Tripterygium wilfordii HOM05D006441 ORTHO05D008203 1.2e-38 164.1 222 50.5
Lalb_Chr14g0365131 Lupinus albus HOM05D006441 ORTHO05D008203 4.5e-38 162.2 223 49.8
Nn6g34544 Nelumbo nucifera HOM05D006441 ORTHO05D008203 4.5e-38 162.2 190 52.6
Sabra07G0005900 Salix brachista HOM05D006441 ORTHO05D008203 4.5e-38 162.2 214 49.1
Peaxi162Scf00096g01848 Petunia axillaris HOM05D006441 ORTHO05D008203 1.3e-37 160.6 214 47.7
RcHm_v2.0_Chr1g0321831 Rosa chinensis HOM05D006441 ORTHO05D008203 1.3e-37 160.6 214 52.3
Cpa.g.sc129.63 Carica papaya HOM05D006441 ORTHO05D008203 2.2e-37 159.8 233 48.9
CANSAT01G2205 Cannabis sativa HOM05D006441 ORTHO05D008203 3.8e-37 159.1 221 48.9
RcHm_v2.0_Chr2g0109061 Rosa chinensis HOM05D006441 ORTHO05D008203 6.5e-37 158.3 215 51.2
FAN19G0231 Fragaria x ananassa HOM05D006441 ORTHO05D008203 8.5e-37 157.9 220 50.0
FvH4_1g18350 Fragaria vesca HOM05D006441 ORTHO05D008203 1.9e-36 156.8 220 49.5
Solyc02g092010.4 Solanum lycopersicum HOM05D006441 ORTHO05D008203 7.2e-36 154.8 214 48.6
Sopen02g036590 Solanum pennellii HOM05D006441 ORTHO05D008203 7.2e-36 154.8 214 48.6
PGSC0003DMG400021428 Solanum tuberosum HOM05D006441 ORTHO05D008203 9.4e-36 154.5 213 47.9
Manes.12G118300 Manihot esculenta HOM05D006441 ORTHO05D008203 1.2e-35 154.1 223 46.6
arahy.Tifrunner.gnm1.ann1.FY2PML Arachis hypogaea HOM05D006441 ORTHO05D008203 8.0e-35 151.4 225 50.7
CiPaw.07G037300 Carya illinoinensis HOM05D006441 ORTHO05D008203 8.8e-34 147.9 224 47.8
Nitab4.5_0000142g0480 Nicotiana tabacum HOM05D006441 ORTHO05D008203 8.8e-34 147.9 216 47.7
arahy.Tifrunner.gnm1.ann1.H9DIKV Arachis hypogaea HOM05D006441 ORTHO05D008203 1.2e-33 147.5 224 49.1
Hund16422 Selenicereus undatus HOM05D006441 ORTHO05D008203 3.4e-33 146.0 224 43.8
Sc16g0002790 Simmondsia chinensis HOM05D006441 ORTHO05D008203 7.5e-33 144.8 218 47.7
VMungo0647G1795 Vigna mungo HOM05D006441 ORTHO05D008203 9.8e-33 144.4 217 47.0
Eucgr.H02336 Eucalyptus grandis HOM05D006441 ORTHO05D008203 1.3e-32 144.1 226 47.8
Phvul.008G200200 Phaseolus vulgaris HOM05D006441 ORTHO05D008203 1.3e-32 144.1 218 46.3
Potri.007G007700 Populus trichocarpa HOM05D006441 ORTHO05D008203 1.3e-32 144.1 218 45.9
CAN.G1343.13 Capsicum annuum HOM05D006441 ORTHO05D008203 1.7e-32 143.7 213 46.0
FAN23G0818 Fragaria x ananassa HOM05D006441 ORTHO05D008203 1.7e-32 143.7 215 48.8
DCAR_010797 Daucus carota HOM05D006441 ORTHO05D008203 2.8e-32 142.9 216 45.8
Lj4A166T80 Lonicera japonica HOM05D006441 ORTHO05D008203 4.9e-32 142.1 233 42.5
TPR.G19350 Trifolium pratense HOM05D006441 ORTHO05D008203 4.9e-32 142.1 219 45.7
MD02G1190600 Malus domestica HOM05D006441 ORTHO05D008203 6.3e-32 141.7 217 46.5
FAN26G0165 Fragaria x ananassa HOM05D006441 ORTHO05D008203 1.4e-31 140.6 208 48.6
PGR102G2456 Punica granatum HOM05D006441 ORTHO05D008203 4.1e-31 139.0 235 43.8
Medtr5g089970 Medicago truncatula HOM05D006441 ORTHO05D008203 3.5e-30 136.0 219 42.5
MSTRG.23600 Avicennia marina HOM05D006441 ORTHO05D008203 4.5e-30 135.6 222 44.1
Aqoxy6G02956 Aquilegia oxysepala HOM05D006441 ORTHO05D008203 1.0e-29 134.4 248 40.7
Nitab4.5_0001859g0070 Nicotiana tabacum HOM05D006441 ORTHO05D008203 2.5e-28 129.8 216 44.0
HanXRQChr12g0377011 Helianthus annuus HOM05D006441 ORTHO05D008203 3.3e-28 129.4 214 43.5
Ah.03g140760 Amaranthus hybridus HOM05D006441 ORTHO05D008203 2.8e-27 126.3 224 44.2
FAN28G0499 Fragaria x ananassa HOM05D006441 ORTHO05D000355 2.8e-27 126.3 208 47.1
ECA246G2498 Erigeron canadensis HOM05D006441 ORTHO05D008203 1.0e-26 124.4 212 41.5
PSO541G6514 Papaver somniferum HOM05D006441 ORTHO05D008203 3.0e-26 122.9 207 42.5
EL10Ac6g15582 Beta vulgaris HOM05D006441 ORTHO05D008203 4.0e-26 122.5 225 40.9
Lsat_1_v5_gn_3_85860 Lactuca sativa HOM05D006441 ORTHO05D008203 8.9e-26 121.3 214 40.7
MD15G1301700 Malus domestica HOM05D006441 ORTHO05D008203 1.2e-25 120.9 198 44.9
SGA_v2.0_scaffold269G46276 Striga asiatica HOM05D006441 ORTHO05D008203 1.2e-25 120.9 209 43.1
Nitab4.5_0000776g0060 Nicotiana tabacum HOM05D006441 ORTHO05D008203 2.6e-25 119.8 216 42.6
CARHR158800 Cardamine hirsuta HOM05D006441 ORTHO05D008203 4.4e-25 119.0 207 39.6
AT3G49725 Arabidopsis thaliana HOM05D006441 ORTHO05D008203 1.7e-24 117.1 212 38.2
AUR62007550 Chenopodium quinoa HOM05D006441 ORTHO05D008203 1.7e-24 117.1 225 39.6
PSO675G4807 Papaver somniferum HOM05D006441 ORTHO05D008203 2.9e-24 116.3 208 41.3
CsaV3_4G008510 Cucumis sativus L. HOM05D006441 ORTHO05D008203 3.7e-24 115.9 213 39.9
Migut.H00320 Erythranthe guttata HOM05D006441 ORTHO05D008203 1.1e-23 114.4 224 39.3
MELO3C024853.2 Cucumis melo HOM05D006441 ORTHO05D008203 1.8e-23 113.6 221 40.7
Os03g0727900 Oryza sativa ssp. japonica HOM05D006441 ORTHO05D008203 1.8e-23 113.6 220 42.7
unitig_899.g14592 Utricularia gibba HOM05D006441 ORTHO05D008203 2.4e-23 113.2 219 41.1
ATR0019G023 Amborella trichopoda HOM05D006441 ORTHO05D008203 3.2e-23 112.8 218 41.7
AL5G29680 Arabidopsis lyrata HOM05D006441 ORTHO05D008203 5.4e-23 112.1 216 39.8
ClCG07G009810 Citrullus lanatus HOM05D006441 ORTHO05D008203 5.4e-23 112.1 228 38.2
Sed0000343 Sechium edule HOM05D006441 ORTHO05D008203 5.4e-23 112.1 225 40.0
Zm00001eb055970 Zea mays HOM05D006441 ORTHO05D008203 5.4e-23 112.1 212 42.5
Sp5g12360 Schrenkiella parvula HOM05D006441 ORTHO05D008203 6.6e-21 105.1 221 37.1
Ca_06220_v3 Cicer arietinum L. HOM05D006441 ORTHO05D008203 8.6e-21 104.8 227 37.9
AUR62004040 Chenopodium quinoa HOM05D006441 ORTHO05D008203 1.9e-20 103.6 225 38.7
Thhalv10010236m.g Eutrema salsugineum HOM05D006441 ORTHO05D008203 4.3e-20 102.4 222 37.4
CDE07G0466 Ceratophyllum demersum HOM05D006441 ORTHO05D008203 1.2e-19 100.9 216 40.7
COL.COLO4_11627 Corchorus olitorius HOM05D006441 ORTHO05D008203 4.7e-19 99.0 169 41.4
Carub.0005s1608 Capsella rubella HOM05D006441 ORTHO05D008203 1.8e-18 97.1 216 37.5
C08p24750 Brassica napus HOM05D006441 ORTHO05D008203 5.2e-18 95.5 220 36.8
Psat2g019320 Pisum sativum HOM05D006441 ORTHO05D008203 1.5e-17 94.0 217 39.2
BolC8t50089H Brassica oleracea HOM05D006441 ORTHO05D008203 3.4e-17 92.8 215 35.3
Ciclev10018139m.g Citrus clementina HOM05D006441 ORTHO05D008203 2.9e-16 89.7 132 47.7
Aa31LG4G18210 Aethionema arabicum HOM05D006441 ORTHO05D008203 3.7e-16 89.4 220 36.8
BcaB01g00678 Brassica carinata HOM05D006441 ORTHO05D008203 6.4e-16 88.6 209 36.8
THA.LOC104821215 Tarenaya hassleriana HOM05D006441 ORTHO05D008203 8.3e-16 88.2 87 54.0
Actinidia11960 Actinidia chinensis HOM05D006441 ORTHO05D030846 4.6e-14 82.4 113 52.2
SEGI_39991 Sequoiadendron giganteum HOM05D006441 ORTHO05D008203 1.1e-12 77.8 217 31.3
A06p17970 Brassica napus HOM05D006441 ORTHO05D008203 2.5e-12 76.6 218 31.7
SHI11993 Sapria himalayana HOM05D006441 ORTHO05D008203 2.5e-12 76.6 217 30.9
HPP92_008937 Vanilla planifolia HOM05D006441 ORTHO05D008203 3.6e-11 72.8 215 32.1
BraA06t24888Z Brassica rapa HOM05D006441 ORTHO05D008203 3.4e-09 66.2 113 40.7
CDE04G1287 Ceratophyllum demersum HOM05D006441 ORTHO05D008203 3.4e-09 66.2 48 64.6
BcaC07g39436 Brassica carinata HOM05D006441 ORTHO05D008203 1.9e-07 60.5 209 31.6
Mapoly0061s0091 Marchantia polymorpha HOM05D006441 ORTHO05D008203 5.4e-07 58.9 82 47.6


User provided reference genes

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