Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01002002001 Vitis vinifera HOM05D004992 ORTHO05D006004 5.8e-36 153.7 76 100.0
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 6.6e-16 87.0 110 45.5
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 6.6e-16 87.0 112 46.4
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.5e-15 85.9 95 48.4
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 3.3e-15 84.7 112 42.9
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 1.2e-14 82.8 112 42.9
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.2e-14 82.8 95 47.4
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 1.2e-14 82.8 107 44.9
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 4.7e-14 80.9 107 43.0
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 3.1e-13 78.2 108 43.5
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 1.5e-12 75.9 107 42.1
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.6e-12 75.1 101 41.6
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 2.6e-12 75.1 101 41.6
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 4.4e-12 74.3 115 41.7
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 7.6e-12 73.6 95 46.3
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 9.9e-12 73.2 107 41.1
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 1.3e-11 72.8 110 40.0
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.2e-11 72.0 108 41.7
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 2.2e-11 72.0 116 39.7
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 6.4e-11 70.5 108 38.9
Gohir.A04G019200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 6.4e-11 70.5 101 39.6
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 8.4e-11 70.1 113 40.7
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 1.1e-10 69.7 114 38.6
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.4e-10 69.3 114 37.7
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.4e-10 69.3 114 37.7
Glyma.02G289600 Glycine max HOM05D004992 ORTHO05D006004 1.4e-10 69.3 106 38.7
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 2.4e-10 68.6 106 43.4
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 3.2e-10 68.2 121 36.4
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 4.1e-10 67.8 108 38.9
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 5.4e-10 67.4 115 35.7
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 5.4e-10 67.4 118 34.7
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 7.1e-10 67.0 114 38.6
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 7.1e-10 67.0 115 35.7
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 9.2e-10 66.6 101 37.6
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 9.2e-10 66.6 107 38.3
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 1.2e-09 66.2 110 35.5
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.1e-09 65.5 112 37.5
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 2.7e-09 65.1 113 37.2
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 4.6e-09 64.3 115 36.5
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 4.6e-09 64.3 118 36.4
Phvul.008G265500 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 7.8e-09 63.5 112 39.3
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 1.7e-08 62.4 110 36.4
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.7e-08 62.4 109 35.8
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.7e-08 62.4 109 35.8
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 2.3e-08 62.0 109 36.7
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 3.0e-08 61.6 112 35.7
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 3.0e-08 61.6 117 34.2
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 5.1e-08 60.8 114 36.0
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 5.1e-08 60.8 117 34.2
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 8.7e-08 60.1 53 56.6
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 8.7e-08 60.1 115 34.8
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 8.7e-08 60.1 113 36.3
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 1.5e-07 59.3 57 50.9
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 1.9e-07 58.9 53 56.6
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 1.9e-07 58.9 118 33.1
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.9e-07 58.9 47 55.3
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 2.5e-07 58.5 50 58.0
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 3.3e-07 58.2 50 58.0
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 3.3e-07 58.2 47 55.3
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 4.3e-07 57.8 62 51.6
Nitab4.5_0005048g0020 Nicotiana tabacum HOM05D067607 ORTHO05D049378 4.3e-07 57.8 52 53.8
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 4.3e-07 57.8 105 39.0
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 4.3e-07 57.8 105 38.1
Medtr5g092085 Medicago truncatula HOM05D004992 ORTHO05D006004 5.6e-07 57.4 76 47.4
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 5.6e-07 57.4 113 31.9
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 5.6e-07 57.4 109 32.1
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 7.3e-07 57.0 50 48.0
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 7.3e-07 57.0 107 31.8
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 7.3e-07 57.0 107 32.7
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 9.6e-07 56.6 119 31.1
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 9.6e-07 56.6 113 33.6
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.2e-06 56.2 57 49.1
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.6e-06 55.8 117 30.8
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 2.1e-06 55.5 47 59.6
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 2.1e-06 55.5 53 49.1
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 3.6e-06 54.7 41 58.5
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 3.6e-06 54.7 36 63.9
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 3.6e-06 54.7 75 40.0
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 4.7e-06 54.3 57 43.9
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 6.2e-06 53.9 57 45.6
Lsat_1_v5_gn_5_5200 Lactuca sativa HOM05D007823 ORTHO05D000174 6.2e-06 53.9 31 80.6
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 8.1e-06 53.5 114 33.3
Sc16g0006270 Simmondsia chinensis HOM05D004992 ORTHO05D006004 8.1e-06 53.5 77 37.7


User provided reference genes

Program Settings