Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 3.2e-80 301.6 144 100.0
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 3.8e-65 251.5 145 84.1
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 4.7e-63 244.6 144 79.2
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 1.2e-61 240.0 142 78.9
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 1.5e-61 239.6 144 77.1
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 1.5e-61 239.6 144 76.4
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 2.8e-60 235.3 142 76.8
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 4.9e-60 234.6 144 76.4
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 4.9e-60 234.6 141 78.0
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 6.3e-60 234.2 144 76.4
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 6.3e-60 234.2 141 77.3
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.1e-59 233.4 139 78.4
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.1e-59 233.4 139 78.4
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 1.4e-59 233.0 144 77.8
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.4e-59 233.0 145 75.9
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 1.8e-59 232.6 144 75.0
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 1.8e-59 232.6 144 74.3
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 2.4e-59 232.3 144 77.1
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 4.1e-59 231.5 141 76.6
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 4.1e-59 231.5 139 77.7
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 4.1e-59 231.5 144 75.0
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 7.0e-59 230.7 142 76.8
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 9.2e-59 230.3 144 75.0
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 9.2e-59 230.3 144 73.6
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 1.2e-58 229.9 144 73.6
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.6e-58 229.6 144 75.7
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 2.7e-58 228.8 144 74.3
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 2.7e-58 228.8 142 77.5
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 4.5e-58 228.0 144 75.0
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 4.5e-58 228.0 144 75.7
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 4.5e-58 228.0 141 76.6
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 4.5e-58 228.0 144 75.0
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 5.9e-58 227.6 141 75.9
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 1.3e-57 226.5 144 73.6
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.3e-57 226.5 144 74.3
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 1.7e-57 226.1 141 75.2
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.9e-57 225.3 142 76.1
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.9e-57 225.3 142 76.1
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 3.8e-57 224.9 141 75.9
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 5.0e-57 224.6 143 74.1
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 6.6e-57 224.2 144 73.6
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 6.6e-57 224.2 142 75.4
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 1.5e-56 223.0 144 75.7
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 1.9e-56 222.6 143 73.4
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 1.9e-56 222.6 146 74.0
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 2.5e-56 222.2 144 73.6
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 4.3e-56 221.5 144 74.3
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 4.3e-56 221.5 145 74.5
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 9.5e-56 220.3 142 73.2
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 1.6e-55 219.5 145 69.7
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.6e-55 219.5 144 74.3
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 3.6e-55 218.4 145 71.0
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 4.7e-55 218.0 144 72.9
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 8.0e-55 217.2 143 72.7
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 8.0e-55 217.2 143 72.7
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 8.0e-55 217.2 139 72.7
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.0e-54 216.9 144 71.5
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 1.8e-54 216.1 144 71.5
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 3.0e-54 215.3 142 72.5
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 4.0e-54 214.9 142 70.4
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 4.0e-54 214.9 142 72.5
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 5.2e-54 214.5 144 72.2
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.2e-53 213.4 139 71.9
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 1.5e-53 213.0 145 71.7
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 2.0e-53 212.6 145 72.4
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 2.0e-53 212.6 142 71.1
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 5.8e-53 211.1 145 71.0
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 9.8e-53 210.3 139 71.2
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 9.8e-53 210.3 137 70.1
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 1.3e-52 209.9 145 69.0
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 3.7e-52 208.4 172 62.8
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 4.9e-52 208.0 145 71.7
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.1e-51 206.8 139 71.2
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 1.4e-51 206.5 139 71.9
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.8e-51 206.1 139 70.5
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 3.2e-51 205.3 142 68.3
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 4.1e-51 204.9 145 71.0
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 5.4e-51 204.5 127 74.8
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 5.4e-51 204.5 145 70.3
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 9.2e-51 203.8 144 68.1
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 1.2e-50 203.4 142 64.8
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 1.2e-50 203.4 137 70.8
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 1.6e-50 203.0 143 66.4
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 2.0e-50 202.6 141 68.1
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 2.0e-50 202.6 143 67.8
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 2.7e-50 202.2 141 68.1
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 2.7e-50 202.2 145 70.3
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 3.5e-50 201.8 138 71.0
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 3.5e-50 201.8 139 70.5
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 3.5e-50 201.8 139 70.5
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 4.6e-50 201.4 144 66.7
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 6.0e-50 201.1 137 69.3
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 1.3e-49 199.9 139 69.1
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 1.3e-49 199.9 139 69.1
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 1.3e-49 199.9 177 57.6
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.7e-49 199.5 141 68.1
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 1.7e-49 199.5 137 67.9
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 3.0e-49 198.7 130 73.8
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 3.9e-49 198.4 139 66.2
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 6.6e-49 197.6 139 69.1
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 6.6e-49 197.6 148 65.5
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 6.6e-49 197.6 145 65.5
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.9e-48 196.1 139 67.6
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.9e-48 196.1 139 67.6
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 2.5e-48 195.7 142 62.0
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 3.3e-48 195.3 207 53.6
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 7.3e-48 194.1 139 66.9
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 9.5e-48 193.7 139 66.9
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 1.2e-47 193.4 147 68.0
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 3.6e-47 191.8 141 66.0
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 8.0e-47 190.7 134 64.9
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 1.1e-46 190.3 135 65.9
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 1.1e-46 190.3 134 68.7
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 1.8e-46 189.5 133 69.2
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 4.0e-46 188.3 270 41.1
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 5.2e-46 188.0 145 64.8
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 8.9e-46 187.2 145 64.1
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 1.5e-45 186.4 143 62.2
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 3.4e-45 185.3 132 65.2
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 7.5e-45 184.1 136 61.0
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 4.9e-44 181.4 139 64.0
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 6.4e-44 181.0 145 60.0
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 6.4e-44 181.0 169 55.6
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 8.3e-44 180.6 134 62.7
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 1.1e-43 180.3 144 62.5
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 1.4e-43 179.9 139 64.0
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 2.4e-43 179.1 147 59.2
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 4.1e-43 178.3 147 61.9
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 5.4e-43 177.9 142 59.9
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 1.6e-42 176.4 132 61.4
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 2.1e-42 176.0 132 61.4
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 2.7e-42 175.6 132 61.4
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 3.0e-41 172.2 135 60.7
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 2.8e-39 165.6 199 46.2
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 2.8e-39 165.6 134 58.2
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 3.6e-39 165.2 102 75.5
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 3.6e-39 165.2 132 62.1
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 1.1e-38 163.7 101 78.2
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 3.1e-38 162.2 144 57.6
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 7.5e-37 157.5 136 59.6
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 9.9e-37 157.1 107 71.0
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 1.3e-36 156.8 138 55.8
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 4.9e-36 154.8 136 58.8
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 2.4e-35 152.5 154 53.2
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 2.4e-35 152.5 138 55.8
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 3.2e-35 152.1 133 55.6
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 3.2e-35 152.1 133 55.6
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.3e-33 146.7 132 53.0
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.7e-33 146.4 95 72.6
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 6.6e-33 144.4 133 54.1
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.9e-32 142.9 130 52.3
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 2.5e-32 142.5 133 52.6
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 3.1e-30 135.6 131 50.4
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 4.0e-30 135.2 116 55.2
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 8.9e-30 134.0 134 48.5
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 2.6e-29 132.5 91 68.1
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 4.4e-29 131.7 100 62.0
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 1.1e-27 127.1 127 50.4
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 2.7e-26 122.5 141 48.2
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 1.0e-25 120.6 77 72.7
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 4.3e-24 115.2 82 65.9
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 5.6e-24 114.8 106 55.7
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.9e-20 102.4 86 61.6
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 1.0e-17 94.0 125 40.8
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 1.3e-17 93.6 62 69.4
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.3e-17 93.6 132 40.2
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 3.0e-17 92.4 72 63.9
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 1.5e-16 90.1 116 39.7
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 3.6e-15 85.5 44 86.4
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 4.0e-14 82.0 44 81.8
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 4.5e-13 78.6 43 74.4
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 7.6e-13 77.8 43 76.7
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 4.9e-12 75.1 42 73.8
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 6.4e-12 74.7 42 76.2
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 8.4e-12 74.3 43 76.7
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 6.0e-10 68.2 52 59.6
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 9.0e-06 54.3 33 72.7


User provided reference genes

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