Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 4.5e-311 1070.5 547 100.0
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 6.7e-235 817.4 492 84.3
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 6.9e-232 807.4 491 84.5
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 2.2e-230 802.4 490 82.4
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 1.4e-229 799.7 489 82.6
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 9.3e-229 797.0 487 84.6
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 7.9e-228 793.9 490 82.9
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 3.9e-227 791.6 491 81.9
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 8.7e-227 790.4 491 82.1
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 2.5e-226 788.9 482 82.2
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 3.3e-226 788.5 443 90.1
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 4.3e-226 788.1 490 82.0
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 5.7e-226 787.7 495 80.6
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 7.4e-226 787.3 491 81.1
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 1.6e-225 786.2 485 81.9
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 2.1e-225 785.8 493 81.7
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 2.1e-225 785.8 491 81.5
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 2.8e-225 785.4 449 87.5
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 6.2e-225 784.3 440 88.9
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 8.2e-225 783.9 435 89.9
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 1.4e-224 783.1 490 81.2
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 1.8e-224 782.7 441 88.2
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 5.3e-224 781.2 491 80.4
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 5.3e-224 781.2 491 81.1
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 2.0e-223 779.2 483 82.8
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 3.4e-223 778.5 496 80.0
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 4.5e-223 778.1 439 88.4
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 4.5e-223 778.1 495 81.6
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 4.5e-223 778.1 434 90.8
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 7.6e-223 777.3 495 81.6
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 7.6e-223 777.3 490 80.0
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 1.0e-222 776.9 452 86.5
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 1.3e-222 776.5 443 87.6
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 1.3e-222 776.5 492 78.9
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 2.2e-222 775.8 488 82.4
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 2.2e-222 775.8 432 89.4
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 2.9e-222 775.4 490 80.6
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 2.9e-222 775.4 438 87.7
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 1.1e-221 773.5 490 81.2
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 1.1e-221 773.5 511 77.9
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 1.4e-221 773.1 492 80.9
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 2.5e-221 772.3 491 80.2
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 5.5e-221 771.2 490 80.0
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 7.2e-221 770.8 494 80.0
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 7.2e-221 770.8 449 84.9
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 1.6e-220 769.6 439 87.5
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 2.1e-220 769.2 489 79.6
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 4.6e-220 768.1 445 85.4
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.3e-219 766.5 440 87.5
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 1.8e-219 766.1 439 87.0
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 6.7e-219 764.2 497 79.3
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.5e-218 763.1 452 85.2
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.9e-218 762.7 474 81.4
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 4.3e-218 761.5 437 85.6
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 9.7e-218 760.4 505 76.4
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 1.3e-217 760.0 439 86.8
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 6.3e-217 757.7 437 87.4
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 8.2e-217 757.3 454 84.6
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 6.9e-216 754.2 439 84.7
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 2.6e-215 752.3 439 85.6
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 3.4e-215 751.9 447 84.1
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 4.5e-215 751.5 463 82.5
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 5.9e-215 751.1 484 78.7
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 1.0e-214 750.4 438 84.9
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 1.0e-214 750.4 437 86.3
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 1.3e-214 750.0 484 79.1
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 2.9e-214 748.8 494 78.3
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 3.8e-214 748.4 485 79.6
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 6.5e-214 747.7 438 84.2
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 8.5e-214 747.3 439 84.1
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 1.9e-213 746.1 438 84.5
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 1.9e-213 746.1 437 84.4
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 1.9e-213 746.1 437 84.4
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 2.5e-213 745.7 439 85.2
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 4.2e-213 745.0 437 84.2
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 4.2e-213 745.0 437 84.2
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 4.2e-213 745.0 435 86.2
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 7.2e-213 744.2 436 84.4
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 7.2e-213 744.2 447 83.0
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 9.4e-213 743.8 445 83.6
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 1.2e-212 743.4 492 78.3
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 1.6e-212 743.0 448 82.4
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 1.6e-212 743.0 439 85.0
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 2.1e-212 742.7 475 79.6
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 2.7e-212 742.3 442 85.3
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 2.7e-212 742.3 437 84.0
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 2.7e-212 742.3 443 83.1
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 3.6e-212 741.9 443 83.1
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 6.1e-212 741.1 437 84.0
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 6.1e-212 741.1 447 83.2
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 1.0e-211 740.3 475 79.2
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 1.4e-211 740.0 446 83.0
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 1.8e-211 739.6 479 78.9
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 5.1e-211 738.0 443 82.6
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 5.1e-211 738.0 443 82.6
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 8.8e-211 737.3 437 84.4
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 1.1e-210 736.9 432 84.0
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 5.7e-210 734.6 432 83.8
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 7.4e-210 734.2 486 77.8
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 1.3e-209 733.4 443 82.2
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 2.2e-209 732.6 488 78.1
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 1.1e-208 730.3 434 83.6
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 1.4e-208 729.9 491 77.8
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 2.4e-208 729.2 431 83.5
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 3.1e-208 728.8 487 75.6
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 4.1e-208 728.4 434 83.9
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 5.3e-208 728.0 493 75.9
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 6.9e-208 727.6 463 81.2
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 4.5e-207 724.9 434 82.7
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 2.2e-206 722.6 431 82.8
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 5.0e-206 721.5 488 77.0
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 2.2e-201 706.1 437 80.3
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 4.8e-201 704.9 447 80.1
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 3.8e-198 695.3 413 83.1
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 3.2e-197 692.2 431 78.2
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 3.3e-194 682.2 385 87.3
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 6.5e-190 667.9 433 78.8
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 4.5e-183 645.2 432 72.9
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 1.9e-181 639.8 445 71.5
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 4.0e-179 632.1 432 72.5
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 3.4e-178 629.0 427 73.3
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 2.8e-177 625.9 469 68.0
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 3.6e-172 609.0 435 68.7
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 1.5e-170 603.6 356 83.4
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 6.4e-169 598.2 495 66.5
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 2.4e-168 596.3 427 70.3
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 3.3e-165 585.9 427 69.1
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.7e-159 566.2 318 89.0
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 1.1e-157 560.8 315 89.8
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 2.3e-155 553.1 428 66.6
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 6.2e-124 448.7 317 74.1
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 3.0e-118 429.9 330 67.9
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 2.1e-116 423.7 258 82.6
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 3.7e-116 422.9 262 80.9
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 2.0e-114 417.2 233 88.0
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 5.8e-114 415.6 289 74.0
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.7e-113 414.1 435 50.8
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 8.5e-97 358.6 221 81.4
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 4.4e-93 346.3 405 52.3
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 2.8e-92 343.6 201 85.1
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 6.9e-91 339.0 182 92.9
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 3.1e-83 313.5 177 85.9
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 5.3e-75 286.2 222 68.9
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 1.6e-74 284.6 182 78.6
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 4.8e-68 263.1 425 40.5
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 5.9e-66 256.1 295 47.8
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 1.7e-65 254.6 217 63.6
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 1.9e-64 251.1 217 63.6
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 2.1e-63 247.7 217 62.2
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 2.3e-62 244.2 239 58.6
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 1.6e-58 231.5 121 92.6
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 1.7e-57 228.0 215 58.1
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.3e-49 201.8 116 84.5
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 4.1e-43 180.3 188 55.3
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.3e-40 170.6 95 87.4
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 1.8e-38 164.9 86 91.9
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 2.9e-36 157.5 171 52.0
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 1.1e-30 139.0 141 56.0
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 5.8e-29 133.3 133 48.9
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 6.6e-25 119.8 79 70.9
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 3.6e-23 114.0 67 85.1
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 2.0e-21 108.2 206 39.3
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 9.9e-21 105.9 125 50.4
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 8.4e-20 102.8 64 81.2
vmacro20529 Vaccinium macrocarpon HOM05D004109 ORTHO05D427059 1.1e-19 102.4 75 66.7
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 6.6e-17 93.2 57 82.5
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 2.8e-15 87.8 66 68.2
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 7.6e-13 79.7 49 81.6
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 7.6e-13 79.7 45 86.7
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 2.2e-12 78.2 48 83.3
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 1.4e-11 75.5 69 63.8
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 3.2e-11 74.3 46 80.4
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 3.0e-09 67.8 37 89.2
vmacro09568 Vaccinium macrocarpon HOM05D004109 ORTHO05D003511 3.9e-09 67.4 72 58.3
Zm00001eb213480 Zea mays HOM05D002921 ORTHO05D003258 4.3e-08 63.9 58 65.5
vmacro06073 Vaccinium macrocarpon HOM05D000331 ORTHO05D021523 1.3e-07 62.4 43 69.8
vmacro07499 Vaccinium macrocarpon HOM05D004109 ORTHO05D426741 8.1e-07 59.7 64 54.7
vmacro08382 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 1.8e-06 58.5 42 69.0
arahy.Tifrunner.gnm1.ann1.E8SK3Y Arachis hypogaea HOM05D004109 ORTHO05D084058 2.4e-06 58.2 34 76.5
SMO137G0306 Selaginella moellendorffii HOM05D004109 ORTHO05D377039 3.1e-06 57.8 31 83.9
Lsat_1_v5_gn_3_28400 Lactuca sativa HOM05D001423 ORTHO05D048396 9.0e-06 56.2 71 49.3


User provided reference genes

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