Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01001582001 Vitis vinifera HOM05D000290 ORTHO05D006676 1.4e-18 95.1 44 100.0
GSVIVG01035242001 Vitis vinifera HOM05D000290 ORTHO05D006676 3.0e-13 77.4 43 81.4
GSVIVG01038367001 Vitis vinifera HOM05D000290 ORTHO05D006676 2.0e-12 74.7 42 81.0
Nn4g24663 Nelumbo nucifera HOM05D000290 ORTHO05D006676 2.8e-11 70.9 43 74.4
Aqoxy3G04138_Aqoxy3G04139 Aquilegia oxysepala HOM05D000290 ORTHO05D006676 1.1e-10 68.9 43 72.1
CiPaw.04G048800 Carya illinoinensis HOM05D000290 ORTHO05D006676 1.4e-10 68.6 43 76.7
Prupe.3G015600 Prunus persica HOM05D000290 ORTHO05D006676 1.4e-10 68.6 43 74.4
Cfa007761 Carpinus fangiana HOM05D000290 ORTHO05D006676 1.8e-10 68.2 43 74.4
Haze_14311 Corylus avellana HOM05D000290 ORTHO05D006676 1.8e-10 68.2 43 74.4
Eucgr.J01643 Eucalyptus grandis HOM05D000290 ORTHO05D006676 1.8e-10 68.2 43 69.8
DCAR_003415 Daucus carota HOM05D000238 ORTHO05D001156 4.1e-10 67.0 43 69.8
FvH4_1g30310 Fragaria vesca HOM05D000290 ORTHO05D006676 4.1e-10 67.0 43 72.1
Manes.01G122600 Manihot esculenta HOM05D000290 ORTHO05D006676 4.1e-10 67.0 43 74.4
Os11g0549635 Oryza sativa ssp. japonica HOM05D000290 ORTHO05D006676 4.1e-10 67.0 43 69.8
Os11g0549686 Oryza sativa ssp. japonica HOM05D000290 ORTHO05D006676 4.1e-10 67.0 43 69.8
MD17G1270600 Malus domestica HOM05D000290 ORTHO05D006676 5.4e-10 66.6 43 74.4
RcHm_v2.0_Chr3g0490181 Rosa chinensis HOM05D000290 ORTHO05D006676 5.4e-10 66.6 42 76.2
TAR629G2667 Trochodendron aralioides HOM05D000290 ORTHO05D006676 7.0e-10 66.2 43 69.8
Sc14g0006520 Simmondsia chinensis HOM05D000290 ORTHO05D006676 9.1e-10 65.9 43 67.4
Thecc.04G000900 Theobroma cacao HOM05D000290 ORTHO05D006676 9.1e-10 65.9 42 78.6
Zm00001eb201710 Zea mays HOM05D000290 ORTHO05D006676 9.1e-10 65.9 43 69.8
Sabra04G0049700 Salix brachista HOM05D000290 ORTHO05D006676 1.6e-09 65.1 43 69.8
Lj2C513G4 Lonicera japonica HOM05D000290 ORTHO05D006676 2.0e-09 64.7 43 69.8
Potri.004G075100 Populus trichocarpa HOM05D000290 ORTHO05D006676 2.0e-09 64.7 43 67.4
SalBow5G1779 Salvia bowleyana HOM05D000290 ORTHO05D006676 2.0e-09 64.7 42 69.0
SalBow5G4017 Salvia bowleyana HOM05D000290 ORTHO05D006676 2.0e-09 64.7 42 69.0
TWI74G0971 Tripterygium wilfordii HOM05D000290 ORTHO05D006676 2.0e-09 64.7 43 69.8
vmacro20482 Vaccinium macrocarpon HOM05D000290 ORTHO05D006676 2.0e-09 64.7 43 69.8
Duzib138G1691 Durio zibethinus HOM05D000290 ORTHO05D006676 2.7e-09 64.3 43 74.4
Medtr5g077080 Medicago truncatula HOM05D000290 ORTHO05D006676 2.7e-09 64.3 43 65.1
QL02p060375 Quercus lobata HOM05D000290 ORTHO05D006676 2.7e-09 64.3 43 67.4
Atru.chr12.1226 Acer truncatum HOM05D000290 ORTHO05D006676 3.5e-09 63.9 43 67.4
Psat2g043960 Pisum sativum HOM05D000290 ORTHO05D006676 3.5e-09 63.9 43 65.1
CSS0016026 Camellia sinensis var. sinensis HOM05D004515 ORTHO05D006676 4.5e-09 63.5 43 67.4
AUR62018236 Chenopodium quinoa HOM05D000290 ORTHO05D006676 4.5e-09 63.5 43 65.1
Dinv28236 Davidia involucrata HOM05D000290 ORTHO05D006676 5.9e-09 63.2 43 69.8
Oeu009443.1 Olea europaea HOM05D000290 ORTHO05D006676 5.9e-09 63.2 43 67.4
Eucgr.J01633 Eucalyptus grandis HOM05D004515 ORTHO05D006676 7.7e-09 62.8 43 67.4
Cc07_g12870 Coffea canephora HOM05D000290 ORTHO05D006676 1.0e-08 62.4 43 69.8
Gohir.A07G169400 Gossypium hirsutum HOM05D000290 ORTHO05D006676 1.0e-08 62.4 43 72.1
Solyc04g008300.1 Solanum lycopersicum HOM05D000290 ORTHO05D006676 1.0e-08 62.4 42 71.4
Sopen04g003420 Solanum pennellii HOM05D000290 ORTHO05D006676 1.0e-08 62.4 42 71.4
PGSC0003DMG400045947 Solanum tuberosum HOM05D000290 ORTHO05D006676 1.0e-08 62.4 42 71.4
PGSC0003DMG404029448 Solanum tuberosum HOM05D000290 ORTHO05D006676 1.0e-08 62.4 42 71.4
Actinidia17170 Actinidia chinensis HOM05D000290 ORTHO05D006676 1.3e-08 62.0 43 67.4
Gohir.D07G175800 Gossypium hirsutum HOM05D000290 ORTHO05D006676 1.3e-08 62.0 43 69.8
Gorai.001G196700 Gossypium raimondii HOM05D000290 ORTHO05D006676 1.3e-08 62.0 43 69.8
PSO063G2011 Papaver somniferum HOM05D000290 ORTHO05D006676 1.3e-08 62.0 43 67.4
arahy.Tifrunner.gnm1.ann1.NBYX54 Arachis hypogaea HOM05D000290 ORTHO05D006676 1.7e-08 61.6 43 62.8
MSTRG.3678 Avicennia marina HOM05D000290 ORTHO05D006676 1.7e-08 61.6 42 69.0
TPR.G18905 Trifolium pratense HOM05D000290 ORTHO05D006676 1.7e-08 61.6 43 60.5
unitig_32.g11782 Utricularia gibba HOM05D000290 ORTHO05D006676 1.7e-08 61.6 42 69.0
CANSAT01G1953 Cannabis sativa HOM05D000290 ORTHO05D006676 2.2e-08 61.2 43 67.4
Ca_05767_v3 Cicer arietinum L. HOM05D000290 ORTHO05D006676 2.2e-08 61.2 43 62.8
CsaV3_3G020320 Cucumis sativus L. HOM05D000290 ORTHO05D006676 2.2e-08 61.2 43 62.8
LjContig00141g0021713 Lotus japonicus HOM05D000290 ORTHO05D006676 2.2e-08 61.2 43 62.8
Lalb_Chr04g0251481 Lupinus albus HOM05D000290 ORTHO05D006676 2.9e-08 60.8 43 62.8
AL2G23430 Arabidopsis lyrata HOM05D000290 ORTHO05D006676 3.8e-08 60.5 43 67.4
AT1G65950 Arabidopsis thaliana HOM05D000290 ORTHO05D006676 3.8e-08 60.5 43 67.4
ECA246G5015 Erigeron canadensis HOM05D000290 ORTHO05D006676 3.8e-08 60.5 43 62.8
SGA_v2.0_scaffold45G17125 Striga asiatica HOM05D000290 ORTHO05D006676 5.0e-08 60.1 42 66.7
Ciclev10019576m.g Citrus clementina HOM05D000290 ORTHO05D006676 6.5e-08 59.7 43 67.4
PGR042G1712 Punica granatum HOM05D000290 ORTHO05D006676 6.5e-08 59.7 43 62.8
THA.LOC104822112 Tarenaya hassleriana HOM05D000290 ORTHO05D006676 6.5e-08 59.7 43 65.1
PGSC0003DMG400029496 Solanum tuberosum HOM05D000290 ORTHO05D006676 8.5e-08 59.3 42 69.0
ClCG05G012110 Citrullus lanatus HOM05D000290 ORTHO05D006676 1.1e-07 58.9 43 62.8
Ah.10g032610 Amaranthus hybridus HOM05D000290 ORTHO05D006676 1.5e-07 58.5 43 60.5
Glyma.02G241300 Glycine max HOM05D000290 ORTHO05D006676 1.5e-07 58.5 43 62.8
Phvul.008G239800 Phaseolus vulgaris HOM05D000290 ORTHO05D006676 1.5e-07 58.5 43 62.8
VMungo0647G0176 Vigna mungo HOM05D000290 ORTHO05D006676 1.5e-07 58.5 43 62.8
BcaB03g15306 Brassica carinata HOM05D000290 ORTHO05D006676 1.9e-07 58.2 43 65.1
C06p39280 Brassica napus HOM05D000290 ORTHO05D006676 1.9e-07 58.2 43 65.1
BolC6t39021H Brassica oleracea HOM05D000290 ORTHO05D006676 1.9e-07 58.2 43 65.1
MELO3C023760.2 Cucumis melo HOM05D000290 ORTHO05D006676 1.9e-07 58.2 43 60.5
Thhalv10018274m.g Eutrema salsugineum HOM05D000290 ORTHO05D006676 1.9e-07 58.2 43 65.1
Sed0027292 Sechium edule HOM05D000290 ORTHO05D006676 1.9e-07 58.2 43 62.8
BcaC08g46093 Brassica carinata HOM05D000290 ORTHO05D006676 2.5e-07 57.8 43 65.1
A07p33030 Brassica napus HOM05D000290 ORTHO05D006676 2.5e-07 57.8 43 65.1
BraA07t30931Z Brassica rapa HOM05D000290 ORTHO05D006676 2.5e-07 57.8 43 65.1
HanXRQChr09g0259791 Helianthus annuus HOM05D000290 ORTHO05D006676 2.5e-07 57.8 43 62.8
Lsat_1_v5_gn_8_112060 Lactuca sativa HOM05D000290 ORTHO05D006676 2.5e-07 57.8 43 60.5
Sp5g21020 Schrenkiella parvula HOM05D000290 ORTHO05D006676 2.5e-07 57.8 43 65.1
Carub.0002s1190 Capsella rubella HOM05D000290 ORTHO05D006676 3.2e-07 57.4 43 65.1
Mapoly0097s0048 Marchantia polymorpha HOM05D000290 ORTHO05D006676 4.2e-07 57.0 45 51.1
Migut.K01085 Erythranthe guttata HOM05D000290 ORTHO05D006676 5.5e-07 56.6 42 64.3
Pp3c13_6150 Physcomitrium patens HOM05D000290 ORTHO05D006676 9.4e-07 55.8 44 52.3
Aqoxy514s002 Aquilegia oxysepala HOM05D004515 ORTHO05D006676 2.1e-06 54.7 33 75.8


User provided reference genes

Program Settings