Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 1.8e-246 855.5 442 100.0
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 1.1e-211 740.0 444 85.6
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 2.4e-211 738.8 443 86.5
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 1.2e-210 736.5 443 86.9
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 3.5e-210 734.9 443 85.6
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 6.0e-210 734.2 443 86.2
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 8.7e-209 730.3 443 85.3
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.9e-208 729.2 443 85.3
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 1.9e-208 729.2 443 85.3
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 1.9e-208 729.2 444 85.1
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 3.3e-208 728.4 445 85.2
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 5.6e-208 727.6 445 85.2
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 7.3e-208 727.2 441 84.1
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 7.3e-208 727.2 447 85.0
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 9.6e-208 726.9 444 84.2
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.2e-207 726.5 420 88.3
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 2.8e-207 725.3 443 85.3
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 6.2e-207 724.2 444 84.5
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 6.2e-207 724.2 443 86.0
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 8.1e-207 723.8 442 84.2
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 1.1e-206 723.4 443 84.9
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 1.8e-206 722.6 445 84.9
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 5.3e-206 721.1 444 84.2
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 1.2e-205 719.9 445 83.8
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 1.5e-205 719.5 441 83.9
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 2.0e-205 719.2 443 83.7
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 3.4e-205 718.4 442 84.4
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 4.4e-205 718.0 443 84.0
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 4.4e-205 718.0 441 85.0
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 9.9e-205 716.8 441 83.9
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 2.2e-204 715.7 443 82.6
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 2.2e-204 715.7 443 82.6
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 2.9e-204 715.3 442 83.7
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 8.4e-204 713.8 444 84.0
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 1.1e-203 713.4 444 82.4
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 2.4e-203 712.2 445 82.9
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 5.4e-203 711.1 445 83.8
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 5.4e-203 711.1 445 83.1
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 1.3e-201 706.4 441 82.8
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 1.3e-201 706.4 445 82.9
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 1.3e-201 706.4 444 83.6
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.7e-201 706.1 445 82.9
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.1e-200 703.4 442 82.6
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 1.9e-200 702.6 442 81.4
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 1.9e-200 702.6 443 82.4
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 3.3e-200 701.8 442 83.5
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 9.6e-200 700.3 444 81.3
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 1.6e-199 699.5 444 81.3
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 2.1e-199 699.1 442 82.4
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 2.8e-199 698.7 444 81.5
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 4.8e-199 698.0 443 82.4
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 4.8e-199 698.0 444 82.0
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 1.1e-198 696.8 442 82.1
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.4e-198 696.4 446 82.3
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.8e-198 696.0 440 83.0
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 2.4e-198 695.7 443 81.9
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 3.1e-198 695.3 440 81.8
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 4.0e-198 694.9 443 82.4
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 5.3e-198 694.5 442 82.4
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 3.4e-197 691.8 439 80.9
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 3.4e-197 691.8 443 80.8
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 7.6e-197 690.6 444 82.2
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 1.3e-196 689.9 442 81.7
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 1.3e-196 689.9 444 81.1
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 1.7e-196 689.5 447 81.2
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 2.2e-196 689.1 441 81.9
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 2.9e-196 688.7 443 80.6
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 3.8e-196 688.3 439 80.6
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 1.9e-195 686.0 440 80.9
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 1.9e-195 686.0 441 79.6
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 3.2e-195 685.3 443 82.4
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 9.3e-195 683.7 442 79.0
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 7.9e-194 680.6 439 79.5
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.3e-193 679.9 443 80.8
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 3.9e-193 678.3 443 80.4
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 1.5e-192 676.4 442 80.3
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 1.9e-192 676.0 441 78.0
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 1.9e-192 676.0 415 83.4
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 4.3e-192 674.9 441 79.4
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 1.3e-191 673.3 441 78.9
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 1.3e-191 673.3 443 80.8
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 1.3e-191 673.3 438 79.9
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 2.1e-191 672.5 441 78.7
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 4.8e-191 671.4 410 83.2
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 1.1e-190 670.2 410 82.9
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 2.4e-190 669.1 442 79.6
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 3.1e-190 668.7 442 79.2
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 2.6e-189 665.6 444 78.8
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 5.8e-189 664.5 441 79.1
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 2.2e-188 662.5 442 78.5
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 2.2e-188 662.5 442 78.5
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 4.9e-188 661.4 443 77.9
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 1.4e-187 659.8 441 78.5
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 1.9e-187 659.4 441 78.0
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 7.1e-187 657.5 441 78.0
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 7.1e-187 657.5 441 78.0
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 9.3e-187 657.1 441 78.0
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 1.2e-186 656.8 448 77.5
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 2.7e-186 655.6 417 81.1
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.8e-185 652.9 485 73.4
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 3.0e-185 652.1 396 83.6
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 6.7e-185 651.0 435 77.0
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.5e-184 649.8 398 82.4
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 1.5e-184 649.8 383 84.9
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 3.3e-184 648.7 442 77.4
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 5.6e-184 647.9 442 77.4
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.3e-183 646.7 388 85.3
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 1.1e-182 643.7 442 76.0
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 1.1e-182 643.7 442 76.0
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.4e-182 643.3 425 78.8
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.8e-182 642.9 431 77.5
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 3.1e-182 642.1 381 85.3
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 6.9e-182 641.0 441 76.6
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 6.9e-182 641.0 441 76.6
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 2.0e-181 639.4 440 75.7
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 5.8e-181 637.9 440 75.2
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 5.5e-179 631.3 442 76.9
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 8.7e-177 624.0 490 67.3
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 6.9e-174 614.4 382 82.5
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.6e-170 603.2 446 73.8
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 1.5e-168 596.7 442 72.2
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 3.2e-163 578.9 369 82.4
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 5.3e-158 561.6 392 76.3
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 1.1e-155 553.9 372 74.2
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 2.3e-153 546.2 307 90.9
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 3.3e-152 542.3 376 72.6
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 6.3e-151 538.1 362 78.2
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 1.8e-150 536.6 366 71.0
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 2.0e-149 533.1 406 65.8
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 1.2e-146 523.9 370 70.5
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 1.4e-145 520.4 366 69.4
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 4.0e-145 518.8 436 63.3
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 2.6e-144 516.2 362 69.9
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.7e-143 513.5 378 69.0
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.2e-143 513.1 378 69.0
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 4.8e-143 511.9 362 68.2
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 5.3e-142 508.4 384 67.4
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 2.0e-141 506.5 361 72.3
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 1.2e-136 490.7 395 62.0
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 2.2e-135 486.5 361 67.6
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 7.7e-133 478.0 395 61.3
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 1.7e-132 476.9 317 78.5
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 2.8e-130 469.5 360 64.4
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 3.6e-114 416.0 365 60.5
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 8.6e-100 368.2 366 56.6
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 4.9e-95 352.4 302 62.3
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 4.2e-86 322.8 226 73.9
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 3.2e-70 270.0 186 77.4
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 5.7e-67 259.2 328 45.1
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 6.1e-61 239.2 139 87.8
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 1.9e-59 234.2 160 72.5
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 2.5e-59 233.8 197 62.4
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 1.6e-58 231.1 123 88.6
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 7.7e-40 169.1 217 45.2
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 1.1e-38 165.2 119 71.4
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 1.4e-36 158.3 111 76.6
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 1.1e-33 148.7 81 90.1
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 6.5e-31 139.4 82 85.4
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 6.8e-28 129.4 112 56.2
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 2.0e-27 127.9 80 71.2
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 4.0e-20 103.6 74 64.9
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 4.1e-17 93.6 103 51.5
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 5.0e-15 86.7 94 50.0
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 2.0e-08 64.7 35 88.6


User provided reference genes

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