Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01001070001 Vitis vinifera HOM05D006631 ORTHO05D008359 2.4e-30 134.8 66 100.0
GSVIVG01027398001 Vitis vinifera HOM05D006631 ORTHO05D008359 4.3e-11 70.9 34 94.1
Actinidia28101 Actinidia chinensis HOM05D006631 ORTHO05D008359 2.8e-10 68.2 34 88.2
Dinv34238 Davidia involucrata HOM05D006631 ORTHO05D008359 6.1e-10 67.0 34 88.2
QL08p046273 Quercus lobata HOM05D006631 ORTHO05D008359 6.1e-10 67.0 34 88.2
CAN.G1415.2 Capsicum annuum HOM05D006631 ORTHO05D008359 8.0e-10 66.6 34 88.2
Nn1g00373 Nelumbo nucifera HOM05D006631 ORTHO05D008359 1.0e-09 66.2 34 88.2
Atru.chr5.731 Acer truncatum HOM05D006631 ORTHO05D008359 1.4e-09 65.9 44 70.5
arahy.Tifrunner.gnm1.ann1.588I57 Arachis hypogaea HOM05D006631 ORTHO05D008359 1.4e-09 65.9 34 85.3
arahy.Tifrunner.gnm1.ann1.NC261Q Arachis hypogaea HOM05D006631 ORTHO05D008359 1.4e-09 65.9 34 85.3
Manes.05G019200 Manihot esculenta HOM05D006631 ORTHO05D008359 1.4e-09 65.9 34 85.3
Nitab4.5_0002527g0020 Nicotiana tabacum HOM05D006631 ORTHO05D008359 1.4e-09 65.9 34 85.3
Phvul.006G115700 Phaseolus vulgaris HOM05D006631 ORTHO05D008359 1.4e-09 65.9 34 85.3
VMungo0540G1103 Vigna mungo HOM05D006631 ORTHO05D008359 1.4e-09 65.9 34 85.3
Ah.05g179220 Amaranthus hybridus HOM05D006631 ORTHO05D008359 1.8e-09 65.5 34 79.4
ClCG05G000610 Citrullus lanatus HOM05D006631 ORTHO05D008359 1.8e-09 65.5 34 85.3
MELO3C005999.2 Cucumis melo HOM05D006631 ORTHO05D008359 1.8e-09 65.5 34 85.3
Thhalv10006166m.g Eutrema salsugineum HOM05D006631 ORTHO05D008359 1.8e-09 65.5 34 85.3
Oeu007870.1 Olea europaea HOM05D006631 ORTHO05D008359 1.8e-09 65.5 34 85.3
PGSC0003DMG400000125 Solanum tuberosum HOM05D006631 ORTHO05D008359 1.8e-09 65.5 34 82.4
SalBow5G1997 Salvia bowleyana HOM05D006631 ORTHO05D008359 2.3e-09 65.1 34 88.2
BcaC07g42601 Brassica carinata HOM05D006631 ORTHO05D008359 3.1e-09 64.7 34 85.3
A09p53900 Brassica napus HOM05D006631 ORTHO05D008359 3.1e-09 64.7 34 85.3
C08p36710 Brassica napus HOM05D006631 ORTHO05D008359 3.1e-09 64.7 34 85.3
BolC8t51253H Brassica oleracea HOM05D006631 ORTHO05D008359 3.1e-09 64.7 34 85.3
BraA09t40806Z Brassica rapa HOM05D006631 ORTHO05D008359 3.1e-09 64.7 34 85.3
AUR62004534 Chenopodium quinoa HOM05D006631 ORTHO05D008359 3.1e-09 64.7 34 82.4
AUR62022720 Chenopodium quinoa HOM05D006631 ORTHO05D008359 3.1e-09 64.7 34 82.4
Glyma.03G259400 Glycine max HOM05D006631 ORTHO05D008359 3.1e-09 64.7 34 82.4
Glyma.19G258300 Glycine max HOM05D006631 ORTHO05D008359 3.1e-09 64.7 34 82.4
Lalb_Chr19g0133561 Lupinus albus HOM05D006631 ORTHO05D008359 3.1e-09 64.7 34 82.4
Psat3g001400 Pisum sativum HOM05D006631 ORTHO05D008359 3.1e-09 64.7 34 82.4
Sed0011774 Sechium edule HOM05D006631 ORTHO05D008359 3.1e-09 64.7 34 82.4
TWI59G0463 Tripterygium wilfordii HOM05D006631 ORTHO05D008359 3.1e-09 64.7 34 85.3
CARHR172210 Cardamine hirsuta HOM05D006631 ORTHO05D008359 4.0e-09 64.3 34 82.4
Peaxi162Scf00767g00111 Petunia axillaris HOM05D006631 ORTHO05D008359 4.0e-09 64.3 34 82.4
Eucgr.D02642 Eucalyptus grandis HOM05D006631 ORTHO05D008359 5.2e-09 63.9 34 85.3
Ciclev10021628m.g Citrus clementina HOM05D006631 ORTHO05D008359 6.8e-09 63.5 34 82.4
Gohir.A11G099200 Gossypium hirsutum HOM05D006631 ORTHO05D008359 6.8e-09 63.5 34 79.4
Gohir.D11G103700 Gossypium hirsutum HOM05D006631 ORTHO05D008359 6.8e-09 63.5 34 79.4
Gorai.007G111000 Gossypium raimondii HOM05D006631 ORTHO05D008359 6.8e-09 63.5 34 79.4
MBI04_g33414_MAGBIO Magnolia biondii HOM05D006631 ORTHO05D008359 6.8e-09 63.5 34 85.3
Sabra14G0075400 Salix brachista HOM05D006631 ORTHO05D008359 6.8e-09 63.5 34 79.4
Solyc01g096240.4 Solanum lycopersicum HOM05D006631 ORTHO05D008359 6.8e-09 63.5 34 76.5
Sopen01g040000 Solanum pennellii HOM05D006631 ORTHO05D008359 6.8e-09 63.5 34 76.5
CSS0025910 Camellia sinensis var. sinensis HOM05D006631 ORTHO05D008359 8.9e-09 63.2 34 82.4
CsaV3_3G007830 Cucumis sativus L. HOM05D006631 ORTHO05D008359 8.9e-09 63.2 34 85.3
Lj1g0014889 Lotus japonicus HOM05D006631 ORTHO05D008359 8.9e-09 63.2 34 82.4
TAR375G0108 Trochodendron aralioides HOM05D006631 ORTHO05D008359 8.9e-09 63.2 34 79.4
PSO063G1328 Papaver somniferum HOM05D006631 ORTHO05D008359 1.2e-08 62.8 34 82.4
PSO782G2421 Papaver somniferum HOM05D006631 ORTHO05D008359 1.2e-08 62.8 34 82.4
Sp5g01490 Schrenkiella parvula HOM05D006631 ORTHO05D008359 1.2e-08 62.8 34 79.4
vmacro12589 Vaccinium macrocarpon HOM05D006631 ORTHO05D008359 1.2e-08 62.8 34 79.4
Aa31LG10G15890 Aethionema arabicum HOM05D006631 ORTHO05D008359 1.5e-08 62.4 34 82.4
CSS0022670 Camellia sinensis var. sinensis HOM05D006631 ORTHO05D008359 1.5e-08 62.4 34 82.4
PGR031G0416 Punica granatum HOM05D006631 ORTHO05D008359 1.5e-08 62.4 34 79.4
Hund16731 Selenicereus undatus HOM05D006631 ORTHO05D008359 1.5e-08 62.4 34 79.4
MSTRG.4800 Avicennia marina HOM05D006631 ORTHO05D008359 2.0e-08 62.0 34 82.4
CANSAT56G2365 Cannabis sativa HOM05D006631 ORTHO05D008359 2.0e-08 62.0 44 63.6
Cfa003762 Carpinus fangiana HOM05D006631 ORTHO05D008359 2.0e-08 62.0 34 82.4
Migut.N01525 Erythranthe guttata HOM05D006631 ORTHO05D008359 2.0e-08 62.0 34 82.4
Thecc.01G337000 Theobroma cacao HOM05D006631 ORTHO05D008359 2.0e-08 62.0 34 79.4
Duzib138G0935 Durio zibethinus HOM05D006631 ORTHO05D008359 2.6e-08 61.6 34 79.4
Medtr7g117970 Medicago truncatula HOM05D006631 ORTHO05D008359 2.6e-08 61.6 34 79.4
Potri.014G102400 Populus trichocarpa HOM05D006631 ORTHO05D008359 2.6e-08 61.6 34 76.5
AT3G61870 Arabidopsis thaliana HOM05D006631 ORTHO05D008359 3.4e-08 61.2 44 63.6
Cc02_g39740 Coffea canephora HOM05D006631 ORTHO05D008359 3.4e-08 61.2 34 76.5
Haze_15698 Corylus avellana HOM05D006631 ORTHO05D008359 3.4e-08 61.2 34 79.4
TPR.G4790 Trifolium pratense HOM05D006631 ORTHO05D008359 3.4e-08 61.2 34 79.4
Ca_09530_v3 Cicer arietinum L. HOM05D006631 ORTHO05D008359 4.4e-08 60.8 34 76.5
SEGI_25065 Sequoiadendron giganteum HOM05D006631 ORTHO05D008359 4.4e-08 60.8 34 76.5
THA.LOC104817387 Tarenaya hassleriana HOM05D006631 ORTHO05D008359 5.8e-08 60.5 34 76.5
AL5G44450 Arabidopsis lyrata HOM05D006631 ORTHO05D008359 7.5e-08 60.1 34 76.5
Os02g0122500 Oryza sativa ssp. japonica HOM05D006631 ORTHO05D008359 7.5e-08 60.1 34 76.5
RcHm_v2.0_Chr1g0360621 Rosa chinensis HOM05D006631 ORTHO05D008359 7.5e-08 60.1 34 73.5
Carub.0005s2861 Capsella rubella HOM05D006631 ORTHO05D008359 9.8e-08 59.7 34 73.5
Cpa.g.sc144.12 Carica papaya HOM05D006631 ORTHO05D008359 9.8e-08 59.7 34 76.5
ECA240G4795 Erigeron canadensis HOM05D006631 ORTHO05D008359 9.8e-08 59.7 34 79.4
FvH4_7g17240 Fragaria vesca HOM05D006631 ORTHO05D008359 9.8e-08 59.7 34 73.5
FAN01G0947 Fragaria x ananassa HOM05D006631 ORTHO05D008359 9.8e-08 59.7 34 73.5
FAN03G0022 Fragaria x ananassa HOM05D006631 ORTHO05D008359 9.8e-08 59.7 34 73.5
FAN06G3280 Fragaria x ananassa HOM05D006631 ORTHO05D008359 9.8e-08 59.7 34 73.5
FAN06G3756 Fragaria x ananassa HOM05D006631 ORTHO05D008359 9.8e-08 59.7 34 73.5
FAN10G2512 Fragaria x ananassa HOM05D006631 ORTHO05D008359 9.8e-08 59.7 34 73.5
FAN10G3243 Fragaria x ananassa HOM05D006631 ORTHO05D008359 9.8e-08 59.7 34 73.5
MD01G1086200 Malus domestica HOM05D006631 ORTHO05D008359 9.8e-08 59.7 34 76.5
Lj9A602T26 Lonicera japonica HOM05D006631 ORTHO05D008359 1.3e-07 59.3 34 79.4
Rhsim01G0176500 Rhododendron simsii HOM05D006631 ORTHO05D008359 1.3e-07 59.3 34 76.5
HanXRQChr03g0094051 Helianthus annuus HOM05D006631 ORTHO05D008359 2.2e-07 58.5 34 76.5
CiPaw.01G079400 Carya illinoinensis HOM05D006631 ORTHO05D008359 2.9e-07 58.2 34 79.4
MSTRG.28278 Avicennia marina HOM05D006631 ORTHO05D008359 4.9e-07 57.4 34 76.5
Mapoly0049s0137 Marchantia polymorpha HOM05D006631 ORTHO05D008359 4.9e-07 57.4 34 67.6
Nitab4.5_0000307g0140 Nicotiana tabacum HOM05D006631 ORTHO05D008359 8.3e-07 56.6 31 83.9
TAR374G1450 Trochodendron aralioides HOM05D000482 ORTHO05D000349 8.3e-07 56.6 34 73.5
Sc23g0001960 Simmondsia chinensis HOM05D006631 ORTHO05D008359 1.1e-06 56.2 34 73.5
HPP92_002500 Vanilla planifolia HOM05D006631 ORTHO05D008359 1.4e-06 55.8 34 76.5
Lsat_1_v5_gn_3_141021 Lactuca sativa HOM05D006631 ORTHO05D008359 3.2e-06 54.7 34 79.4
Glyma.16G021600 Glycine max HOM05D006631 ORTHO05D008359 4.1e-06 54.3 34 70.6
SMO143G0155 Selaginella moellendorffii HOM05D006631 ORTHO05D008359 4.1e-06 54.3 44 59.1
CBR_g37545 Chara braunii HOM05D006631 ORTHO05D008359 5.4e-06 53.9 34 70.6
Cre12.g519300 Chlamydomonas reinhardtii HOM05D006631 ORTHO05D008359 5.4e-06 53.9 34 64.7
PRCOL_00004956 Prasinoderma coloniale HOM05D006631 ORTHO05D008359 5.4e-06 53.9 44 52.3


User provided reference genes

Program Settings