Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 8.6e-90 333.6 162 100.0
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 3.0e-42 175.6 108 77.8
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 6.7e-42 174.5 108 76.9
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 3.3e-41 172.2 109 79.8
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 3.7e-40 168.7 108 75.0
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 3.7e-40 168.7 108 74.1
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 6.3e-40 167.9 108 74.1
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 1.8e-39 166.4 108 73.1
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 3.4e-38 162.2 108 69.4
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 3.4e-38 162.2 108 70.4
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 2.2e-37 159.5 108 71.3
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 8.5e-37 157.5 109 68.8
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.1e-36 157.1 109 69.7
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 1.1e-36 157.1 107 72.0
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 1.4e-36 156.8 109 67.0
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 1.4e-36 156.8 109 68.8
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 1.9e-36 156.4 108 74.1
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 1.9e-36 156.4 108 68.5
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 2.5e-36 156.0 109 67.0
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 3.2e-36 155.6 108 74.1
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 3.2e-36 155.6 108 70.4
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 4.2e-36 155.2 112 67.0
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 5.5e-36 154.8 108 69.4
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 7.2e-36 154.5 108 73.1
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 9.4e-36 154.1 108 66.7
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 1.2e-35 153.7 108 74.1
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 1.6e-35 153.3 108 69.4
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 1.6e-35 153.3 108 67.6
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 1.6e-35 153.3 108 72.2
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 1.6e-35 153.3 108 69.4
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.6e-35 153.3 108 65.7
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.6e-35 153.3 108 65.7
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 2.1e-35 152.9 128 61.7
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 2.1e-35 152.9 108 66.7
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 2.1e-35 152.9 108 68.5
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 2.1e-35 152.9 108 69.4
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 2.1e-35 152.9 108 66.7
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 2.7e-35 152.5 108 69.4
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 2.7e-35 152.5 109 67.9
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 2.7e-35 152.5 122 63.9
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 3.6e-35 152.1 108 65.7
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 4.7e-35 151.8 108 64.8
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 4.7e-35 151.8 108 66.7
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 7.9e-35 151.0 108 67.6
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 1.0e-34 150.6 108 66.7
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 1.4e-34 150.2 104 71.2
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 1.4e-34 150.2 108 67.6
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 1.8e-34 149.8 108 65.7
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 2.3e-34 149.4 109 67.0
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 2.3e-34 149.4 112 65.2
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 3.0e-34 149.1 109 67.9
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 3.0e-34 149.1 117 61.5
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 3.9e-34 148.7 109 66.1
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 3.9e-34 148.7 109 67.9
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 3.9e-34 148.7 108 68.5
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 3.9e-34 148.7 108 65.7
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 5.1e-34 148.3 108 66.7
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 5.1e-34 148.3 108 65.7
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 6.7e-34 147.9 146 54.1
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 6.7e-34 147.9 108 67.6
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 6.7e-34 147.9 108 66.7
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 6.7e-34 147.9 108 65.7
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 8.8e-34 147.5 109 67.9
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 1.1e-33 147.1 109 66.1
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 1.5e-33 146.7 108 67.6
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 1.5e-33 146.7 111 63.1
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 1.5e-33 146.7 108 65.7
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 2.0e-33 146.4 109 64.2
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 2.0e-33 146.4 108 65.7
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 2.6e-33 146.0 108 64.8
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 2.6e-33 146.0 108 62.0
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 2.6e-33 146.0 109 65.1
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 3.3e-33 145.6 108 62.0
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 3.3e-33 145.6 108 63.9
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 3.3e-33 145.6 108 64.8
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 4.4e-33 145.2 108 66.7
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 5.7e-33 144.8 108 65.7
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 5.7e-33 144.8 108 65.7
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 7.4e-33 144.4 109 62.4
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 1.7e-32 143.3 108 63.9
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 1.7e-32 143.3 109 60.6
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 2.2e-32 142.9 108 65.7
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 2.8e-32 142.5 108 61.1
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 2.8e-32 142.5 108 64.8
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 4.8e-32 141.7 108 63.0
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 6.3e-32 141.4 109 63.3
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 6.3e-32 141.4 109 62.4
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 6.3e-32 141.4 110 60.9
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 6.3e-32 141.4 108 62.0
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 8.2e-32 141.0 108 63.9
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 8.2e-32 141.0 108 64.8
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 1.1e-31 140.6 108 67.6
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 1.8e-31 139.8 108 63.0
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 1.8e-31 139.8 108 63.0
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 1.8e-31 139.8 108 63.0
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 3.1e-31 139.0 109 66.1
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 3.1e-31 139.0 108 61.1
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 4.1e-31 138.7 109 64.2
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 4.1e-31 138.7 108 62.0
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 1.6e-30 136.7 108 64.8
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 1.6e-30 136.7 108 61.1
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 4.5e-30 135.2 108 61.1
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 4.5e-30 135.2 108 65.7
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 4.5e-30 135.2 100 67.0
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 7.7e-30 134.4 123 55.3
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 1.3e-29 133.7 108 64.8
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 1.3e-29 133.7 87 73.6
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 1.3e-29 133.7 107 58.9
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 1.7e-29 133.3 114 59.6
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 2.5e-28 129.4 95 65.3
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 2.5e-28 129.4 100 65.0
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 3.2e-28 129.0 85 71.8
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 4.2e-28 128.6 116 58.6
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 5.5e-28 128.3 88 69.3
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 5.5e-28 128.3 91 65.9
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 7.2e-28 127.9 104 55.8
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 9.4e-28 127.5 85 71.8
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 1.6e-27 126.7 90 67.8
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 2.1e-27 126.3 88 68.2
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 1.4e-26 123.6 112 56.2
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 1.8e-26 123.2 102 62.7
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 5.2e-26 121.7 108 51.9
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 5.2e-26 121.7 108 50.0
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 2.0e-25 119.8 108 54.6
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 2.0e-25 119.8 87 62.1
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 5.7e-25 118.2 87 66.7
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 9.7e-25 117.5 97 61.9
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 1.7e-24 116.7 92 62.0
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 2.2e-24 116.3 86 66.3
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 2.2e-24 116.3 86 66.3
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 3.7e-24 115.5 87 65.5
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 3.7e-24 115.5 108 54.6
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 4.8e-24 115.2 108 54.6
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 6.3e-24 114.8 86 67.4
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 6.3e-24 114.8 94 59.6
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 1.4e-23 113.6 87 62.1
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 1.4e-23 113.6 108 53.7
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 4.1e-23 112.1 86 61.6
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 2.7e-22 109.4 108 55.6
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 7.7e-22 107.8 88 59.1
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 6.5e-21 104.8 87 62.1
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 2.7e-19 99.4 72 62.5
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 1.8e-18 96.7 97 51.5
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 3.0e-18 95.9 110 46.4
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 5.2e-18 95.1 109 45.9
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 2.6e-17 92.8 109 39.4
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 4.4e-17 92.0 66 65.2
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 9.8e-17 90.9 86 53.5
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 8.3e-16 87.8 108 41.7
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 3.5e-14 82.4 58 60.3
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 3.5e-14 82.4 87 50.6
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 7.7e-14 81.3 86 51.2
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 6.5e-13 78.2 74 51.4
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 7.2e-12 74.7 110 37.3
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 3.6e-11 72.4 109 37.6
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 8.0e-11 71.2 111 36.0
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 1.5e-09 67.0 92 39.1
AUR62041784 Chenopodium quinoa HOM05D003690 ORTHO05D137882 3.7e-08 62.4 41 65.9
Zm00001eb007300 Zea mays HOM05D004855 ORTHO05D005656 3.5e-06 55.8 65 44.6
Zm00001eb198520 Zea mays HOM05D012833 ORTHO05D005656 3.5e-06 55.8 65 44.6


User provided reference genes

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