Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 1.3e-89 333.2 190 100.0
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 9.6e-56 220.7 192 69.3
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 4.8e-55 218.4 192 70.8
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 3.8e-52 208.8 192 61.5
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 6.4e-52 208.0 192 69.8
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.6e-50 203.4 194 66.0
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 1.0e-49 200.7 212 64.6
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 2.5e-48 196.1 202 66.8
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 5.6e-48 194.9 209 61.2
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 5.6e-48 194.9 209 61.2
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 5.6e-48 194.9 190 64.7
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 5.6e-48 194.9 200 59.5
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 7.3e-48 194.5 200 58.0
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.3e-47 193.7 190 68.4
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 1.3e-47 193.7 199 68.3
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 8.1e-47 191.0 185 66.5
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 1.4e-46 190.3 193 68.9
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 1.8e-46 189.9 191 62.8
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 2.4e-46 189.5 192 63.0
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 4.0e-46 188.7 183 65.0
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 4.0e-46 188.7 183 65.0
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 6.9e-46 188.0 192 62.0
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 9.0e-46 187.6 194 56.2
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 4.5e-45 185.3 198 63.1
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 4.5e-45 185.3 202 67.3
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 4.5e-45 185.3 195 60.5
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 1.3e-44 183.7 205 63.9
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 8.4e-44 181.0 193 64.8
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 1.4e-43 180.3 187 62.0
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 1.9e-43 179.9 207 63.8
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 2.4e-43 179.5 193 67.4
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 3.2e-43 179.1 188 56.4
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 5.5e-43 178.3 199 65.3
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 9.3e-43 177.6 196 63.8
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.2e-42 177.2 197 62.9
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.6e-42 176.8 210 61.0
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 1.0e-41 174.1 199 56.3
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.0e-41 174.1 192 60.9
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 1.3e-41 173.7 198 65.7
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 6.7e-41 171.4 187 61.0
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 8.7e-41 171.0 202 62.4
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 1.5e-40 170.2 192 62.5
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 1.9e-40 169.9 206 62.1
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 1.9e-40 169.9 206 61.2
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.5e-40 169.5 193 50.8
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 7.4e-40 167.9 194 58.2
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 9.6e-40 167.5 224 47.8
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 1.6e-39 166.8 204 55.9
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.6e-39 166.8 234 55.6
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 3.7e-39 165.6 208 58.7
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 3.7e-39 165.6 227 48.9
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 3.7e-39 165.6 191 59.2
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 4.0e-38 162.2 216 56.9
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 5.3e-38 161.8 215 52.1
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 5.3e-38 161.8 216 54.2
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 6.9e-38 161.4 187 57.2
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 6.9e-38 161.4 199 62.3
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 9.0e-38 161.0 200 51.0
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 2.6e-37 159.5 194 51.0
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 5.8e-37 158.3 184 62.5
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.0e-36 157.5 188 53.2
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 1.0e-36 157.5 203 49.8
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 2.2e-36 156.4 231 45.9
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 3.8e-36 155.6 226 54.4
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 6.5e-36 154.8 202 55.0
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 6.5e-36 154.8 211 47.4
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 6.5e-36 154.8 196 60.2
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 8.4e-36 154.5 207 56.0
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 1.1e-35 154.1 187 59.4
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.9e-35 153.3 186 56.5
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 3.2e-35 152.5 207 56.0
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 4.2e-35 152.1 200 48.0
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 7.1e-35 151.4 213 55.9
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 9.3e-35 151.0 205 57.1
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.2e-34 150.6 214 44.9
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.6e-34 150.2 189 59.8
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 1.6e-34 150.2 207 49.8
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 2.1e-34 149.8 202 55.0
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 2.1e-34 149.8 235 47.2
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 2.1e-34 149.8 182 51.6
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 2.1e-34 149.8 200 47.5
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 3.5e-34 149.1 190 58.9
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 4.6e-34 148.7 192 59.4
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 4.6e-34 148.7 189 59.3
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 6.0e-34 148.3 198 61.6
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 6.0e-34 148.3 199 56.8
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 7.9e-34 147.9 185 49.2
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.0e-33 147.5 183 49.2
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 1.3e-33 147.1 200 58.0
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.8e-33 146.7 193 57.0
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 2.3e-33 146.4 188 58.0
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 3.9e-33 145.6 243 45.3
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 1.5e-32 143.7 200 57.5
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 1.9e-32 143.3 192 52.6
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 1.9e-32 143.3 184 46.7
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 2.5e-32 142.9 199 57.8
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 4.3e-32 142.1 203 58.6
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 7.4e-32 141.4 197 56.9
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 9.6e-32 141.0 175 58.3
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 9.6e-32 141.0 200 57.0
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 2.1e-31 139.8 186 54.8
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 2.1e-31 139.8 196 60.2
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 3.7e-31 139.0 198 51.0
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 3.7e-31 139.0 191 55.0
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 4.8e-31 138.7 212 55.2
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 4.8e-31 138.7 190 44.2
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 6.3e-31 138.3 225 48.0
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 8.2e-31 137.9 188 57.4
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 1.1e-30 137.5 185 43.8
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 1.1e-30 137.5 185 43.8
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 1.4e-30 137.1 182 59.3
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 2.4e-30 136.3 182 58.8
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 3.1e-30 136.0 213 54.9
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 3.1e-30 136.0 182 58.8
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 4.1e-30 135.6 207 55.1
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 4.1e-30 135.6 207 55.1
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 5.3e-30 135.2 185 48.1
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 6.9e-30 134.8 195 55.4
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 9.0e-30 134.4 185 42.7
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 9.0e-30 134.4 182 58.2
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 9.0e-30 134.4 197 50.8
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 9.0e-30 134.4 213 54.0
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 1.2e-29 134.0 204 52.5
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.2e-29 134.0 152 57.9
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 1.5e-29 133.7 182 58.2
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 1.5e-29 133.7 195 52.8
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 2.0e-29 133.3 207 45.4
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 3.4e-29 132.5 191 54.5
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 5.9e-29 131.7 196 52.6
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 2.2e-28 129.8 204 51.0
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 2.9e-28 129.4 197 50.8
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 3.8e-28 129.0 187 55.6
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 5.0e-28 128.6 197 50.8
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 5.0e-28 128.6 186 53.2
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 5.0e-28 128.6 156 47.4
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 8.4e-28 127.9 203 45.3
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 1.1e-27 127.5 197 49.7
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 1.4e-27 127.1 217 39.6
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 3.2e-27 125.9 207 48.8
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 3.2e-27 125.9 231 49.4
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 5.5e-27 125.2 195 44.1
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 9.3e-27 124.4 211 43.1
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 2.1e-26 123.2 188 48.4
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 3.5e-26 122.5 212 51.4
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 3.5e-26 122.5 194 53.1
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 4.6e-26 122.1 183 42.1
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 4.6e-26 122.1 183 42.1
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 4.6e-26 122.1 183 42.1
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 7.9e-26 121.3 220 50.9
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 1.3e-25 120.6 185 50.8
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 1.1e-24 117.5 149 47.0
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 5.7e-24 115.2 225 47.6
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 3.7e-23 112.5 183 42.6
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 6.5e-20 101.7 101 58.4
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 8.5e-20 101.3 216 39.4
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.2e-19 99.4 190 50.0
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 3.2e-19 99.4 190 48.4
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 7.2e-19 98.2 136 58.1
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 7.2e-19 98.2 136 58.1
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 9.4e-19 97.8 136 55.9
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 9.4e-19 97.8 136 55.9
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 1.2e-18 97.4 102 56.9
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.4e-17 94.0 190 47.4
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 2.3e-17 93.2 155 35.5
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 2.5e-16 89.7 113 49.6
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 6.9e-14 81.6 162 45.1
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 1.2e-13 80.9 136 51.5
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 2.9e-12 76.3 211 29.9
SEGI_36735 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 4.2e-11 72.4 123 35.8
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 2.7e-10 69.7 90 40.0
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 3.6e-10 69.3 42 66.7
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.0e-09 67.8 181 32.0
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.8e-09 67.0 35 80.0
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 8.8e-09 64.7 127 33.9
SEGI_34313 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 2.0e-08 63.5 120 34.2
Atru.chr1.737 Acer truncatum HOM05D003968 ORTHO05D004077 1.7e-07 60.5 29 89.7
MBI01_g34424_MAGBIO Magnolia biondii HOM05D001667 ORTHO05D001508 2.8e-07 59.7 144 29.9
SEGI_23541 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 2.8e-07 59.7 140 30.7
SEGI_14851 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 3.7e-07 59.3 111 33.3
SEGI_09126 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 4.8e-07 58.9 111 33.3
Lalb_Chr22g0349911 Lupinus albus HOM05D003968 ORTHO05D004077 8.2e-07 58.2 71 49.3
SEGI_20858 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 1.8e-06 57.0 155 27.1
Pp3c14_14200 Physcomitrium patens HOM05D022619 ORTHO05D026045 5.3e-06 55.5 56 46.4


User provided reference genes

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