Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 1.8e-77 292.4 133 100.0
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 1.5e-63 246.1 139 77.7
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 1.3e-62 243.0 138 79.0
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 1.3e-62 243.0 130 82.3
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 1.3e-62 243.0 130 82.3
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 2.2e-62 242.3 130 81.5
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 2.2e-62 242.3 138 79.0
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 3.7e-62 241.5 130 80.8
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 4.8e-62 241.1 127 80.3
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 4.8e-62 241.1 130 81.5
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 8.2e-62 240.4 143 76.9
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 1.1e-61 240.0 130 80.0
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 1.1e-61 240.0 145 77.2
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 1.1e-61 240.0 130 80.8
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.1e-61 240.0 141 77.3
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 1.8e-61 239.2 130 81.5
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 4.1e-61 238.0 122 84.4
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 4.1e-61 238.0 122 82.8
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 5.3e-61 237.7 139 76.3
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 5.3e-61 237.7 130 81.5
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 6.9e-61 237.3 136 77.2
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 9.0e-61 236.9 143 74.8
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 1.5e-60 236.1 122 82.0
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 2.6e-60 235.3 139 76.3
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 3.4e-60 235.0 130 79.2
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 1.0e-59 233.4 142 73.2
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 1.0e-59 233.4 137 76.6
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 1.3e-59 233.0 130 79.2
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 1.3e-59 233.0 130 78.5
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 2.9e-59 231.9 130 78.5
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 5.0e-59 231.1 130 77.7
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 5.0e-59 231.1 138 74.6
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 1.1e-58 229.9 125 80.8
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.1e-58 229.9 144 74.3
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.4e-58 229.6 116 85.3
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 1.9e-58 229.2 128 77.3
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 4.2e-58 228.0 128 76.6
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 7.2e-58 227.3 131 77.1
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 1.2e-57 226.5 122 82.0
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 1.2e-57 226.5 122 82.0
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 3.6e-57 224.9 140 69.3
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.6e-57 224.9 130 75.4
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 4.6e-57 224.6 140 69.3
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 6.1e-57 224.2 116 81.9
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 7.9e-57 223.8 137 73.7
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 7.9e-57 223.8 122 77.0
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.0e-56 223.4 130 74.6
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 1.0e-56 223.4 128 76.6
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 1.4e-56 223.0 130 76.2
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.3e-56 222.2 130 73.8
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 2.3e-56 222.2 130 73.8
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 3.0e-56 221.9 130 76.2
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 3.0e-56 221.9 128 74.2
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 3.0e-56 221.9 130 74.6
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 3.9e-56 221.5 130 73.1
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 6.7e-56 220.7 130 73.8
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 6.7e-56 220.7 121 78.5
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 6.7e-56 220.7 130 75.4
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 6.7e-56 220.7 130 75.4
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 6.7e-56 220.7 130 75.4
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 8.8e-56 220.3 129 75.2
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 8.8e-56 220.3 130 76.2
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 2.0e-55 219.2 122 75.4
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 2.0e-55 219.2 129 75.2
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 2.5e-55 218.8 125 75.2
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 4.3e-55 218.0 140 70.0
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 4.3e-55 218.0 122 76.2
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 4.3e-55 218.0 122 76.2
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 5.7e-55 217.6 122 74.6
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 7.4e-55 217.2 130 70.8
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 7.4e-55 217.2 130 70.8
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 1.3e-54 216.5 130 71.5
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 1.7e-54 216.1 130 71.5
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 2.2e-54 215.7 118 77.1
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 2.2e-54 215.7 130 70.8
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 2.2e-54 215.7 130 70.8
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 2.2e-54 215.7 130 70.8
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 2.2e-54 215.7 130 73.1
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 2.8e-54 215.3 130 70.8
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 2.8e-54 215.3 115 80.0
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 3.7e-54 214.9 130 70.8
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 8.2e-54 213.8 125 72.8
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 8.2e-54 213.8 130 70.8
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 4.1e-53 211.5 131 71.0
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 4.1e-53 211.5 131 71.0
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 4.1e-53 211.5 123 73.2
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 5.3e-53 211.1 131 70.2
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 6.9e-53 210.7 130 73.8
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 2.6e-52 208.8 130 70.0
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 3.4e-52 208.4 112 76.8
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 5.9e-52 207.6 113 76.1
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 5.9e-52 207.6 115 75.7
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.0e-51 206.8 130 70.0
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 2.2e-51 205.7 130 68.5
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.8e-51 204.9 130 71.5
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 6.5e-51 204.1 130 71.5
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 6.5e-51 204.1 112 78.6
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 8.5e-51 203.8 130 70.0
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.1e-50 203.4 130 69.2
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 1.4e-50 203.0 113 76.1
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.9e-50 202.6 130 70.8
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 3.2e-50 201.8 149 64.4
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 4.2e-50 201.4 131 67.9
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 9.4e-50 200.3 133 66.9
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 6.1e-49 197.6 138 64.5
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 1.0e-48 196.8 125 69.6
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 5.7e-47 191.0 113 73.5
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 5.7e-47 191.0 113 73.5
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 1.8e-45 186.0 104 76.9
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 7.2e-42 174.1 169 52.1
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 3.3e-39 165.2 124 57.3
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 4.4e-39 164.9 154 52.6
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 1.3e-38 163.3 121 57.9
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 2.6e-36 155.6 106 66.0
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 6.5e-35 151.0 120 54.2
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 1.9e-34 149.4 87 77.0
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 1.6e-33 146.4 126 51.6
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 5.2e-32 141.4 74 79.7
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 1.5e-31 139.8 146 47.3
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 4.5e-28 128.3 58 91.4
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 1.1e-26 123.6 57 87.7
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 1.0e-16 90.5 108 45.4
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.3e-16 89.4 54 68.5
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 8.9e-16 87.4 68 60.3
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 1.2e-15 87.0 103 45.6
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 9.8e-15 84.0 59 62.7
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 4.9e-14 81.6 58 62.1
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.4e-13 79.3 58 62.1
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 2.7e-12 75.9 105 42.9
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 3.9e-11 72.0 67 58.2
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 8.6e-11 70.9 109 37.6
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 1.1e-10 70.5 112 34.8
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 4.3e-10 68.6 61 47.5
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 2.1e-09 66.2 40 65.0
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 2.1e-09 66.2 100 36.0
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 1.0e-08 63.9 47 51.1
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 1.8e-08 63.2 47 53.2
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 4.0e-08 62.0 46 52.2
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 4.0e-08 62.0 46 52.2
SalBow8G3396 Salvia bowleyana HOM05D018271 ORTHO05D007055 3.4e-07 58.9 49 57.1


User provided reference genes

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