Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01000906001 Vitis vinifera HOM05D005688 ORTHO05D006630 1.8e-110 402.5 194 100.0
Hma1.2p1_0065F.1_g035040 Hydrangea macrophylla HOM05D005688 ORTHO05D006630 3.4e-101 371.7 194 90.7
CSS0036763 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 1.3e-100 369.8 194 89.7
Dinv17591 Davidia involucrata HOM05D005688 ORTHO05D006630 5.0e-100 367.9 194 89.7
Actinidia09624 Actinidia chinensis HOM05D005688 ORTHO05D006630 6.5e-100 367.5 194 89.2
Cc11_g17240 Coffea canephora HOM05D005688 ORTHO05D006630 1.9e-99 365.9 194 88.1
Dinv11693 Davidia involucrata HOM05D005688 ORTHO05D006630 1.6e-98 362.8 194 88.1
Rhsim12G0023600 Rhododendron simsii HOM05D005688 ORTHO05D006630 2.1e-98 362.5 194 87.1
Cpa.g.sc99.54 Carica papaya HOM05D005688 ORTHO05D006630 4.6e-98 361.3 194 88.1
Lj6A830T28 Lonicera japonica HOM05D005688 ORTHO05D006630 1.0e-97 360.1 194 87.1
CSS0038243 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 1.8e-97 359.4 194 86.6
MSTRG.481 Avicennia marina HOM05D005688 ORTHO05D006630 3.0e-97 358.6 190 87.9
Peaxi162Scf00128g01523 Petunia axillaris HOM05D005688 ORTHO05D006630 6.7e-97 357.5 194 87.6
SalBow2G0527 Salvia bowleyana HOM05D005688 ORTHO05D006630 6.7e-97 357.5 194 87.1
Nitab4.5_0002277g0010 Nicotiana tabacum HOM05D005688 ORTHO05D006630 1.1e-96 356.7 194 87.1
PGSC0003DMG400010801 Solanum tuberosum HOM05D005688 ORTHO05D006630 1.9e-96 355.9 194 87.1
PGR102G0765 Punica granatum HOM05D005688 ORTHO05D006630 4.3e-96 354.8 194 86.6
Sopen05g011970 Solanum pennellii HOM05D005688 ORTHO05D006630 4.3e-96 354.8 194 86.6
TAR629G3099 Trochodendron aralioides HOM05D005688 ORTHO05D006630 4.3e-96 354.8 194 85.1
Actinidia39795 Actinidia chinensis HOM05D005688 ORTHO05D006630 5.7e-96 354.4 190 87.4
Sc04g0010310 Simmondsia chinensis HOM05D005688 ORTHO05D006630 5.7e-96 354.4 195 86.2
Nitab4.5_0000251g0050 Nicotiana tabacum HOM05D005688 ORTHO05D006630 7.4e-96 354.0 194 86.1
Glyma.18G284500 Glycine max HOM05D005688 ORTHO05D006630 1.3e-95 353.2 194 86.6
MD16G1123300 Malus domestica HOM05D005688 ORTHO05D006630 1.3e-95 353.2 194 86.1
RcHm_v2.0_Chr4g0429761 Rosa chinensis HOM05D005688 ORTHO05D006630 1.3e-95 353.2 194 87.1
Haze_12451 Corylus avellana HOM05D005688 ORTHO05D006630 1.6e-95 352.8 194 87.1
FvH4_4g23370 Fragaria vesca HOM05D005688 ORTHO05D006630 2.2e-95 352.4 194 85.1
FAN12G1631 Fragaria x ananassa HOM05D005688 ORTHO05D006630 2.2e-95 352.4 194 85.1
FAN17G3098 Fragaria x ananassa HOM05D005688 ORTHO05D006630 2.2e-95 352.4 194 85.1
Hund06107 Selenicereus undatus HOM05D005688 ORTHO05D006630 2.2e-95 352.4 194 85.1
Solyc05g015980.3 Solanum lycopersicum HOM05D005688 ORTHO05D006630 2.2e-95 352.4 194 86.1
Potri.001G059700 Populus trichocarpa HOM05D005688 ORTHO05D006630 2.8e-95 352.1 193 86.0
Thecc.02G201300 Theobroma cacao HOM05D005688 ORTHO05D006630 2.8e-95 352.1 194 85.1
MBI07_g18747_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 3.7e-95 351.7 194 84.5
Phvul.008G017000 Phaseolus vulgaris HOM05D005688 ORTHO05D006630 3.7e-95 351.7 194 86.1
Migut.E00005 Erythranthe guttata HOM05D005688 ORTHO05D006630 6.3e-95 350.9 194 86.1
TWI75G1512 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 6.3e-95 350.9 194 85.6
CANSAT80G0816 Cannabis sativa HOM05D005688 ORTHO05D006630 8.2e-95 350.5 194 85.1
FAN07G0693 Fragaria x ananassa HOM05D005688 ORTHO05D006630 8.2e-95 350.5 194 84.5
Manes.12G008200 Manihot esculenta HOM05D005688 ORTHO05D006630 8.2e-95 350.5 194 86.1
Potri.003G168300 Populus trichocarpa HOM05D005688 ORTHO05D006630 1.1e-94 350.1 194 87.1
QL03p051598 Quercus lobata HOM05D005688 ORTHO05D006630 1.1e-94 350.1 190 86.8
Prupe.1G222300 Prunus persica HOM05D005688 ORTHO05D006630 1.4e-94 349.7 194 84.5
Glyma.02G097000 Glycine max HOM05D005688 ORTHO05D006630 2.4e-94 349.0 194 86.1
DCAR_024659 Daucus carota HOM05D005688 ORTHO05D006630 3.1e-94 348.6 194 83.5
Cfa009390 Carpinus fangiana HOM05D005688 ORTHO05D006630 4.1e-94 348.2 194 86.1
CiPaw.05G106800 Carya illinoinensis HOM05D005688 ORTHO05D006630 4.1e-94 348.2 194 84.5
Gohir.A04G100300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 5.3e-94 347.8 193 83.4
arahy.Tifrunner.gnm1.ann1.97E8EB Arachis hypogaea HOM05D005688 ORTHO05D006630 6.9e-94 347.4 194 86.1
arahy.Tifrunner.gnm1.ann1.N9VQT0 Arachis hypogaea HOM05D005688 ORTHO05D006630 6.9e-94 347.4 194 86.1
Duzib251G0174 Durio zibethinus HOM05D005688 ORTHO05D006630 6.9e-94 347.4 194 83.5
HanXRQChr17g0568911 Helianthus annuus HOM05D005688 ORTHO05D006630 9.0e-94 347.1 194 83.0
TAR371G0171 Trochodendron aralioides HOM05D005688 ORTHO05D006630 9.0e-94 347.1 194 84.0
TWI36G1544 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 1.2e-93 346.7 194 84.0
vmacro01046 Vaccinium macrocarpon HOM05D005688 ORTHO05D006630 2.0e-93 345.9 204 80.9
Gohir.D04G139300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 4.5e-93 344.7 193 82.9
Gorai.012G124400 Gossypium raimondii HOM05D005688 ORTHO05D006630 5.9e-93 344.4 193 83.4
Medtr7g022390 Medicago truncatula HOM05D005688 ORTHO05D006630 5.9e-93 344.4 194 85.1
TPR.G2946 Trifolium pratense HOM05D005688 ORTHO05D006630 7.7e-93 344.0 193 85.0
Ca_07133_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 1.0e-92 343.6 194 85.1
Ca_28122_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 1.0e-92 343.6 194 85.1
unitig_26.g10416 Utricularia gibba HOM05D005688 ORTHO05D006630 1.3e-92 343.2 194 83.0
Ciclev10032000m.g Citrus clementina HOM05D005688 ORTHO05D006630 1.7e-92 342.8 194 83.5
MELO3C017746.2 Cucumis melo HOM05D005688 ORTHO05D006630 1.7e-92 342.8 194 83.5
ECA234G1377 Erigeron canadensis HOM05D005688 ORTHO05D006630 1.7e-92 342.8 194 83.0
CsaV3_4G002970 Cucumis sativus L. HOM05D005688 ORTHO05D006630 2.2e-92 342.4 194 83.5
Duzib248G1308 Durio zibethinus HOM05D005688 ORTHO05D006630 2.2e-92 342.4 196 82.1
Lj1g0000862 Lotus japonicus HOM05D005688 ORTHO05D006630 5.0e-92 341.3 194 84.5
AUR62005654 Chenopodium quinoa HOM05D005688 ORTHO05D006630 8.5e-92 340.5 195 84.1
AUR62028899 Chenopodium quinoa HOM05D005688 ORTHO05D006630 1.1e-91 340.1 195 83.6
Lalb_Chr10g0092021 Lupinus albus HOM05D005688 ORTHO05D006630 1.1e-91 340.1 194 83.5
Eucgr.B03525 Eucalyptus grandis HOM05D005688 ORTHO05D006630 2.5e-91 339.0 194 83.0
Sed0014060 Sechium edule HOM05D005688 ORTHO05D006630 2.5e-91 339.0 195 83.6
Lalb_Chr17g0336391 Lupinus albus HOM05D005688 ORTHO05D006630 3.2e-91 338.6 194 82.5
EL10Ac6g13540 Beta vulgaris HOM05D005688 ORTHO05D006630 5.5e-91 337.8 194 82.5
Lsat_1_v5_gn_4_280 Lactuca sativa HOM05D005688 ORTHO05D006630 7.2e-91 337.4 196 82.1
THA.LOC104810209 Tarenaya hassleriana HOM05D005688 ORTHO05D006630 1.0e-89 333.6 194 81.4
COL.COLO4_27347 Corchorus olitorius HOM05D005688 ORTHO05D006630 1.4e-89 333.2 198 83.3
Nn3g16394 Nelumbo nucifera HOM05D005688 ORTHO05D006630 3.9e-89 331.6 194 82.0
BraA10t44572Z Brassica rapa HOM05D005688 ORTHO05D006630 1.5e-88 329.7 194 78.4
BolC9t59237H Brassica oleracea HOM05D005688 ORTHO05D006630 2.5e-88 328.9 194 77.3
CDE05G3530 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 4.3e-88 328.2 194 78.4
CDE05G2516 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 1.3e-87 326.6 194 77.8
Aa31LG3G14570 Aethionema arabicum HOM05D005688 ORTHO05D006630 2.2e-87 325.9 194 78.4
ATR0582G145 Amborella trichopoda HOM05D005688 ORTHO05D006630 4.8e-87 324.7 194 77.3
AL6G23700 Arabidopsis lyrata HOM05D005688 ORTHO05D006630 4.8e-87 324.7 194 77.3
Carub.0006s1127 Capsella rubella HOM05D005688 ORTHO05D006630 4.8e-87 324.7 194 76.8
CARHR200370 Cardamine hirsuta HOM05D005688 ORTHO05D006630 4.8e-87 324.7 194 76.8
Aqoxy3G01629 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 1.4e-86 323.2 194 77.8
Sp6g30880 Schrenkiella parvula HOM05D005688 ORTHO05D006630 2.4e-86 322.4 194 76.3
AT5G13100 Arabidopsis thaliana HOM05D005688 ORTHO05D006630 3.1e-86 322.0 194 76.8
C09p63990 Brassica napus HOM05D000918 ORTHO05D006630 4.1e-86 321.6 188 77.1
A03p05810 Brassica napus HOM05D000918 ORTHO05D000791 5.3e-86 321.2 193 75.6
BraA03t09920Z Brassica rapa HOM05D000918 ORTHO05D006630 6.9e-86 320.9 193 75.6
PSO478G0501 Papaver somniferum HOM05D005688 ORTHO05D006630 1.2e-85 320.1 194 78.9
Thhalv10013944m.g Eutrema salsugineum HOM05D005688 ORTHO05D006630 1.5e-85 319.7 194 76.8
PSO017G1106 Papaver somniferum HOM05D005688 ORTHO05D006630 1.5e-85 319.7 194 78.4
Os01g0102500 Oryza sativa ssp. japonica HOM05D005688 ORTHO05D006630 2.6e-85 318.9 194 75.3
Ah.03g135940 Amaranthus hybridus HOM05D005688 ORTHO05D006630 3.4e-85 318.5 194 79.4
C03p06760 Brassica napus HOM05D000918 ORTHO05D006630 3.4e-85 318.5 193 75.1
BolC3t13183H Brassica oleracea HOM05D000918 ORTHO05D006630 3.4e-85 318.5 193 75.1
A10p25100 Brassica napus HOM05D000918 ORTHO05D006630 7.7e-85 317.4 188 76.6
Sabra03G0123400 Salix brachista HOM05D005688 ORTHO05D006630 2.2e-84 315.8 276 61.2
Zm00001eb127020 Zea mays HOM05D005688 ORTHO05D006630 2.1e-82 309.3 194 72.7
CAN.G163.3 Capsicum annuum HOM05D005688 ORTHO05D006630 1.4e-81 306.6 164 87.8
SEGI_34677 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 2.0e-80 302.8 194 71.6
Sabra01G0042800 Salix brachista HOM05D005688 ORTHO05D006630 1.4e-78 296.6 164 86.6
ClCG07G015390 Citrullus lanatus HOM05D005688 ORTHO05D006630 7.0e-78 294.3 164 84.1
SEGI_28374 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 9.1e-78 293.9 195 71.3
Psat3g187080 Pisum sativum HOM05D005688 ORTHO05D006630 1.6e-77 293.1 164 85.4
Ah.02g130750 Amaranthus hybridus HOM05D005688 ORTHO05D006630 3.5e-77 292.0 195 71.8
MBI04_g07882_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 5.9e-77 291.2 194 69.1
Sed0011472 Sechium edule HOM05D005688 ORTHO05D006630 8.5e-76 287.3 164 80.5
BcaB01g05377 Brassica carinata HOM05D005688 ORTHO05D006630 1.6e-74 283.1 194 69.6
ATR0579G080 Amborella trichopoda HOM05D005688 ORTHO05D006630 8.0e-74 280.8 197 65.5
AagrBONN_evm.TU.Sc2ySwM_340.298 Anthoceros agrestis HOM05D005688 ORTHO05D006630 2.3e-73 279.3 196 67.3
HPP92_011533 Vanilla planifolia HOM05D005688 ORTHO05D006630 2.2e-71 272.7 168 78.0
Mapoly0015s0197 Marchantia polymorpha HOM05D005688 ORTHO05D006630 1.1e-70 270.4 198 65.2
unitig_8.g2899 Utricularia gibba HOM05D005688 ORTHO05D006630 7.0e-70 267.7 153 81.7
CBR_g40425 Chara braunii HOM05D005688 ORTHO05D006630 2.0e-69 266.2 181 69.6
BcaC04g19152 Brassica carinata HOM05D005688 ORTHO05D006630 1.6e-66 256.5 194 65.5
SMO367G0614 Selaginella moellendorffii HOM05D005688 ORTHO05D006630 2.1e-66 256.1 194 59.8
HPP92_011539 Vanilla planifolia HOM05D005688 ORTHO05D006630 8.3e-63 244.2 194 63.4
Actinidia08051 Actinidia chinensis HOM05D005688 ORTHO05D006630 3.8e-60 235.3 126 86.5
Actinidia30626 Actinidia chinensis HOM05D001095 ORTHO05D000976 3.0e-57 225.7 190 63.2
Atru.chr11.2370 Acer truncatum HOM05D005688 ORTHO05D006630 6.8e-57 224.6 125 84.8
Manes.13G008600 Manihot esculenta HOM05D005688 ORTHO05D006630 9.8e-56 220.7 125 84.8
CiPaw.06G105500 Carya illinoinensis HOM05D005688 ORTHO05D006630 3.1e-54 215.7 125 81.6
Nn4g22254 Nelumbo nucifera HOM05D005688 ORTHO05D006630 3.0e-44 182.6 100 86.0
Actinidia34019 Actinidia chinensis HOM05D005688 ORTHO05D006630 5.0e-44 181.8 91 91.2
GSVIVG01010535001 Vitis vinifera HOM05D005688 ORTHO05D006630 4.3e-35 152.1 102 79.4
VMungo1215G2942 Vigna mungo HOM05D005688 ORTHO05D006630 4.6e-29 132.1 88 71.6
BcaB03g14943 Brassica carinata HOM05D005688 ORTHO05D006630 8.1e-26 121.3 73 74.0
BcaB07g33260 Brassica carinata HOM05D005688 ORTHO05D006630 1.4e-25 120.6 73 74.0
QL06p005212 Quercus lobata HOM05D005688 ORTHO05D006630 2.3e-12 76.6 43 81.4
Oeu012651.1 Olea europaea HOM05D005688 ORTHO05D006630 1.1e-11 74.3 44 65.9
VMungo1383G3355 Vigna mungo HOM05D005688 ORTHO05D006630 5.3e-09 65.5 47 68.1
unitig_8.g2900 Utricularia gibba HOM05D005688 ORTHO05D006630 9.3e-06 54.7 27 85.2


User provided reference genes

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