Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 3.6e-185 651.4 313 100.0
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 3.0e-139 498.8 316 75.0
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 3.0e-131 472.2 315 69.8
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 9.7e-130 467.2 316 68.0
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 1.3e-129 466.8 316 70.6
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 1.7e-129 466.5 314 70.4
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 3.7e-129 465.3 313 68.7
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 4.8e-129 464.9 314 68.5
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 8.2e-129 464.2 314 68.5
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 2.4e-128 462.6 313 68.4
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 5.3e-128 461.5 316 68.4
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 6.9e-128 461.1 314 68.2
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 1.5e-127 459.9 314 69.4
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 4.5e-127 458.4 311 68.2
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 7.7e-127 457.6 316 68.4
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 7.7e-127 457.6 316 68.4
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 2.2e-126 456.1 314 67.5
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 2.2e-126 456.1 315 68.3
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 2.9e-126 455.7 315 68.9
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 8.5e-126 454.1 317 68.1
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.9e-125 453.0 314 67.5
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 4.2e-125 451.8 285 73.0
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 2.1e-124 449.5 314 66.9
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 2.1e-124 449.5 311 69.1
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 1.0e-123 447.2 316 69.3
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 1.4e-123 446.8 311 67.8
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.8e-123 446.4 314 66.2
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 3.0e-123 445.7 314 66.2
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 3.9e-123 445.3 315 66.0
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 5.1e-123 444.9 291 71.5
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 2.0e-122 443.0 308 67.5
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 2.0e-122 443.0 288 70.8
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 3.3e-122 442.2 314 65.9
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 1.7e-121 439.9 301 68.1
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 2.2e-121 439.5 315 65.4
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 2.8e-121 439.1 291 70.1
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 1.4e-120 436.8 287 70.7
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 1.8e-120 436.4 315 67.3
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 1.8e-120 436.4 288 69.8
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 3.1e-120 435.6 275 74.5
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 3.1e-120 435.6 316 65.8
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 9.1e-120 434.1 281 70.5
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 9.1e-120 434.1 288 69.4
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 1.5e-119 433.3 289 69.6
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 1.5e-119 433.3 291 68.7
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 3.4e-119 432.2 313 65.5
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 5.9e-119 431.4 293 68.3
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 5.9e-119 431.4 316 64.2
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.0e-118 430.6 291 68.7
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 1.3e-118 430.3 278 71.6
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 1.7e-118 429.9 286 69.2
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 1.7e-118 429.9 287 69.7
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 2.2e-118 429.5 315 63.8
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 5.0e-118 428.3 313 64.2
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 6.5e-118 427.9 305 66.6
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 1.1e-117 427.2 293 67.2
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 2.5e-117 426.0 308 64.9
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 3.2e-117 425.6 293 66.2
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 4.2e-117 425.2 315 63.2
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 7.2e-117 424.5 316 61.7
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 7.2e-117 424.5 316 63.0
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 9.4e-117 424.1 289 66.1
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 9.4e-117 424.1 313 64.5
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 1.2e-116 423.7 307 64.2
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 8.0e-116 421.0 291 66.0
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 2.6e-114 416.0 295 65.1
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 9.7e-114 414.1 309 60.5
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 9.7e-114 414.1 291 66.3
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 1.7e-113 413.3 299 65.6
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 1.4e-112 410.2 310 61.6
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 1.4e-112 410.2 305 64.6
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 3.1e-112 409.1 304 59.9
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 4.1e-112 408.7 312 62.5
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 9.1e-112 407.5 294 64.6
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 1.2e-111 407.1 312 61.9
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 1.2e-111 407.1 314 59.6
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 1.0e-110 404.1 305 62.6
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 2.7e-108 396.0 285 63.9
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 3.6e-108 395.6 318 58.5
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 3.6e-108 395.6 301 59.8
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 4.7e-108 395.2 287 62.4
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 2.3e-107 392.9 316 59.5
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 2.3e-107 392.9 293 63.1
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 4.0e-107 392.1 295 61.0
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 3.7e-105 385.6 291 58.1
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 4.8e-105 385.2 314 58.0
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 1.1e-104 384.0 305 57.7
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 1.4e-104 383.6 283 60.4
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 1.8e-104 383.3 283 60.4
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 5.3e-104 381.7 315 58.1
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 2.0e-103 379.8 294 59.5
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 2.0e-103 379.8 294 59.5
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 5.0e-102 375.2 295 58.3
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 1.9e-101 373.2 283 60.1
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 2.5e-101 372.9 311 55.0
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 8.0e-100 367.9 292 58.9
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 4.0e-99 365.5 318 58.5
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 1.5e-98 363.6 284 57.4
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 2.6e-98 362.8 315 53.7
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 3.5e-95 352.4 293 57.7
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 5.9e-95 351.7 299 58.2
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 5.5e-93 345.1 251 64.1
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 1.4e-91 340.5 290 55.9
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 2.8e-84 316.2 229 64.2
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 6.0e-79 298.5 221 62.4
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 1.0e-78 297.7 301 46.2
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 2.3e-75 286.6 297 47.8
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 8.9e-75 284.6 285 46.7
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 4.4e-74 282.3 286 45.8
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 5.8e-74 282.0 316 44.9
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 5.6e-69 265.4 293 42.0
MD17G1140700 Malus domestica HOM05D005299 ORTHO05D006621 3.4e-66 256.1 314 45.9
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 1.0e-62 244.6 291 40.9
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 6.6e-62 241.9 191 55.5
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.5e-53 213.4 287 38.0
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 9.6e-53 211.5 155 65.2
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.6e-52 210.7 292 37.3
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.2e-50 204.5 287 36.9
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.6e-50 203.4 315 35.9
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.9e-49 199.9 316 35.1
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 2.4e-48 196.8 282 34.4
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.1e-48 195.3 291 36.4
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 6.6e-46 188.7 284 34.5
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 8.7e-46 188.3 290 32.8
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 9.6e-45 184.9 300 36.0
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.8e-44 183.3 299 35.5
AagrBONN_evm.TU.Sc2ySwM_117.3041__3042 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.8e-44 182.6 308 33.4
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.3e-43 179.1 260 36.9
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.6e-42 176.8 257 38.1
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.8e-42 175.6 296 35.1
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.9e-41 172.6 297 33.0
AagrBONN_evm.TU.Sc2ySwM_368.682 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.2e-40 169.9 296 33.4
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 1.2e-39 167.9 293 31.4
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.7e-39 166.8 296 33.4
AagrBONN_evm.TU.Sc2ySwM_368.683 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.3e-37 159.5 296 32.1
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 1.5e-34 151.0 318 30.5
AagrBONN_evm.TU.Sc2ySwM_368.684 Anthoceros agrestis HOM05D005299 ORTHO05D006621 8.7e-30 135.2 270 30.4
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 1.1e-27 128.3 278 29.9
CBR_g37320 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-15 87.4 63 55.6
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 3.3e-13 80.1 152 31.6
Cre04.g231810 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 3.3e-13 80.1 79 44.3
ECA233G3003 Erigeron canadensis HOM05D000038 ORTHO05D000423 1.8e-11 74.3 94 40.4
HanXRQChr17g0539561 Helianthus annuus HOM05D005299 ORTHO05D006621 4.1e-11 73.2 40 67.5
AagrBONN_evm.TU.Sc2ySwM_117.3082 Anthoceros agrestis HOM05D005299 ORTHO05D072579 8.5e-09 65.5 128 27.3


User provided reference genes

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