Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01000581001 Vitis vinifera HOM05D007493 ORTHO05D009465 9.2e-27 122.9 64 100.0
PGR119G0352 Punica granatum HOM05D007493 ORTHO05D009465 2.3e-14 81.6 63 68.3
Hma1.2p1_0079F.1_g041210 Hydrangea macrophylla HOM05D007493 ORTHO05D009465 3.1e-14 81.3 62 62.9
Migut.K00631 Erythranthe guttata HOM05D007493 ORTHO05D009465 5.2e-14 80.5 62 62.9
MBI10_g16722_MAGBIO Magnolia biondii HOM05D007493 ORTHO05D009465 5.2e-14 80.5 62 62.9
Sed0018590 Sechium edule HOM05D007493 ORTHO05D009465 5.2e-14 80.5 62 59.7
TAR622G0701 Trochodendron aralioides HOM05D007493 ORTHO05D009465 5.2e-14 80.5 62 64.5
Duzib251G0942 Durio zibethinus HOM05D007493 ORTHO05D009465 6.8e-14 80.1 62 61.3
Gohir.D12G150200 Gossypium hirsutum HOM05D007493 ORTHO05D009465 1.5e-13 79.0 64 59.4
Gorai.008G161700 Gossypium raimondii HOM05D007493 ORTHO05D009465 1.5e-13 79.0 64 59.4
HanXRQChr17g0569621 Helianthus annuus HOM05D007493 ORTHO05D009465 1.5e-13 79.0 62 61.3
Manes.06G112900 Manihot esculenta HOM05D007493 ORTHO05D009465 1.5e-13 79.0 62 59.7
Manes.14G056800 Manihot esculenta HOM05D007493 ORTHO05D009465 1.5e-13 79.0 62 59.7
Atru.chr11.2184 Acer truncatum HOM05D007493 ORTHO05D009465 2.0e-13 78.6 62 59.7
Aqoxy5G03641 Aquilegia oxysepala HOM05D007493 ORTHO05D009465 2.0e-13 78.6 64 60.9
Gohir.A12G145600 Gossypium hirsutum HOM05D007493 ORTHO05D009465 2.0e-13 78.6 64 57.8
Thecc.02G266500 Theobroma cacao HOM05D007493 ORTHO05D009465 2.0e-13 78.6 62 61.3
Cpa.g.sc33.74 Carica papaya HOM05D007493 ORTHO05D009465 2.6e-13 78.2 62 61.3
Prupe.5G160800 Prunus persica HOM05D007493 ORTHO05D009465 2.6e-13 78.2 59 61.0
Nn3g16632 Nelumbo nucifera HOM05D007493 ORTHO05D009465 3.4e-13 77.8 63 61.9
Atru.chr2.2324 Acer truncatum HOM05D007493 ORTHO05D009465 4.4e-13 77.4 62 58.1
DCAR_026494 Daucus carota HOM05D007493 ORTHO05D009465 4.4e-13 77.4 59 62.7
CsaV3_2G025040 Cucumis sativus L. HOM05D007493 ORTHO05D009465 5.8e-13 77.0 62 58.1
Nn4g22523 Nelumbo nucifera HOM05D007493 ORTHO05D009465 5.8e-13 77.0 63 61.9
MELO3C010701.2 Cucumis melo HOM05D007493 ORTHO05D009465 7.5e-13 76.6 62 58.1
HanXRQChr12g0385761 Helianthus annuus HOM05D007493 ORTHO05D009465 7.5e-13 76.6 59 61.0
Gohir.D01G152700 Gossypium hirsutum HOM05D007493 ORTHO05D009465 9.8e-13 76.3 62 58.1
RcHm_v2.0_Chr7g0191781 Rosa chinensis HOM05D007493 ORTHO05D009465 9.8e-13 76.3 60 61.7
Duzib248G1419 Durio zibethinus HOM05D007493 ORTHO05D009465 1.3e-12 75.9 62 56.5
Lsat_1_v5_gn_3_30001 Lactuca sativa HOM05D007493 ORTHO05D009465 1.3e-12 75.9 59 61.0
Medtr8g089640 Medicago truncatula HOM05D007493 ORTHO05D009465 1.3e-12 75.9 60 65.0
Lsat_1_v5_gn_4_3821 Lactuca sativa HOM05D007493 ORTHO05D009465 1.7e-12 75.5 62 58.1
Potri.015G087301 Populus trichocarpa HOM05D007493 ORTHO05D009465 1.7e-12 75.5 62 59.7
A07p32370 Brassica napus HOM05D007493 ORTHO05D009465 2.9e-12 74.7 62 56.5
BraA07t30860Z Brassica rapa HOM05D007493 ORTHO05D009465 2.9e-12 74.7 62 56.5
MD14G1166500 Malus domestica HOM05D007493 ORTHO05D009465 2.9e-12 74.7 60 61.7
BcaB03g15163 Brassica carinata HOM05D007493 ORTHO05D009465 3.7e-12 74.3 62 56.5
BcaB05g24314 Brassica carinata HOM05D007493 ORTHO05D009465 3.7e-12 74.3 62 56.5
BcaC03g14872 Brassica carinata HOM05D007493 ORTHO05D009465 3.7e-12 74.3 62 56.5
BcaC08g46034 Brassica carinata HOM05D007493 ORTHO05D000035 3.7e-12 74.3 62 56.5
BcaC08g46204 Brassica carinata HOM05D001456 ORTHO05D009465 3.7e-12 74.3 62 56.5
A02p14480 Brassica napus HOM05D007493 ORTHO05D009465 3.7e-12 74.3 62 56.5
C02p23440 Brassica napus HOM05D007493 ORTHO05D009465 3.7e-12 74.3 62 56.5
C06p38280 Brassica napus HOM05D007493 ORTHO05D009465 3.7e-12 74.3 62 56.5
C06p42230 Brassica napus HOM05D007493 ORTHO05D009465 3.7e-12 74.3 62 56.5
BolC2t08476H Brassica oleracea HOM05D007493 ORTHO05D009465 3.7e-12 74.3 62 56.5
BraA02t06512Z Brassica rapa HOM05D007493 ORTHO05D009465 3.7e-12 74.3 62 56.5
BraA07t31062Z Brassica rapa HOM05D007493 ORTHO05D009465 3.7e-12 74.3 62 56.5
Ciclev10033289m.g Citrus clementina HOM05D007493 ORTHO05D009465 3.7e-12 74.3 62 56.5
Thhalv10019416m.g Eutrema salsugineum HOM05D007493 ORTHO05D009465 3.7e-12 74.3 62 56.5
THA.LOC104825545 Tarenaya hassleriana HOM05D007493 ORTHO05D009465 3.7e-12 74.3 62 56.5
TWI18G0390 Tripterygium wilfordii HOM05D007493 ORTHO05D009465 3.7e-12 74.3 62 61.3
Atru.BG.141.p Acer truncatum HOM05D007493 ORTHO05D009465 4.9e-12 73.9 58 60.3
Glyma.05G172800 Glycine max HOM05D007493 ORTHO05D009465 4.9e-12 73.9 63 58.7
Glyma.08G130200 Glycine max HOM05D007493 ORTHO05D009465 4.9e-12 73.9 63 58.7
PSO063G3855 Papaver somniferum HOM05D007493 ORTHO05D009465 4.9e-12 73.9 62 58.1
Aa31LG4G12320 Aethionema arabicum HOM05D007493 ORTHO05D009465 6.4e-12 73.6 59 59.3
Carub.0002s1423 Capsella rubella HOM05D007493 ORTHO05D009465 6.4e-12 73.6 62 54.8
Manes.13G020200 Manihot esculenta HOM05D007493 ORTHO05D009465 6.4e-12 73.6 59 55.9
PSO067G0033 Papaver somniferum HOM05D007493 ORTHO05D009465 6.4e-12 73.6 62 58.1
AL2G26520 Arabidopsis lyrata HOM05D007493 ORTHO05D009465 8.3e-12 73.2 62 54.8
AT1G67785 Arabidopsis thaliana HOM05D007493 ORTHO05D009465 8.3e-12 73.2 62 54.8
Cfa009257 Carpinus fangiana HOM05D007493 ORTHO05D009465 8.3e-12 73.2 62 56.5
Haze_12286 Corylus avellana HOM05D007493 ORTHO05D009465 8.3e-12 73.2 62 56.5
Gorai.002G189100 Gossypium raimondii HOM05D007493 ORTHO05D009465 8.3e-12 73.2 62 56.5
MD06G1161100 Malus domestica HOM05D007493 ORTHO05D009465 8.3e-12 73.2 55 61.8
Sc11g0000840 Simmondsia chinensis HOM05D007493 ORTHO05D009465 8.3e-12 73.2 62 56.5
HPP92_009922 Vanilla planifolia HOM05D007493 ORTHO05D009465 8.3e-12 73.2 62 56.5
CiPaw.05G177500 Carya illinoinensis HOM05D007493 ORTHO05D009465 1.4e-11 72.4 62 56.5
COL.COLO4_23524 Corchorus olitorius HOM05D007493 ORTHO05D009465 1.4e-11 72.4 63 57.1
Manes.12G019900 Manihot esculenta HOM05D007493 ORTHO05D009465 1.4e-11 72.4 59 55.9
PGSC0003DMG400010781 Solanum tuberosum HOM05D007493 ORTHO05D009465 1.4e-11 72.4 62 56.5
CARHR060410 Cardamine hirsuta HOM05D007493 ORTHO05D009465 1.9e-11 72.0 62 53.2
Nitab4.5_0000041g0060 Nicotiana tabacum HOM05D007493 ORTHO05D009465 1.9e-11 72.0 62 56.5
Peaxi162Scf00128g00547 Petunia axillaris HOM05D007493 ORTHO05D009465 1.9e-11 72.0 62 56.5
Cc11_g16110 Coffea canephora HOM05D007493 ORTHO05D009465 2.4e-11 71.6 60 55.0
SalBow8G1793 Salvia bowleyana HOM05D007493 ORTHO05D009465 2.4e-11 71.6 59 57.6
Lalb_Chr12g0204101 Lupinus albus HOM05D007493 ORTHO05D009465 3.2e-11 71.2 61 57.4
CANSAT01G0706 Cannabis sativa HOM05D007493 ORTHO05D009465 4.1e-11 70.9 58 55.2
Nitab4.5_0013418g0010 Nicotiana tabacum HOM05D007493 ORTHO05D009465 4.1e-11 70.9 62 54.8
Lj4g0017514 Lotus japonicus HOM05D007493 ORTHO05D009465 5.4e-11 70.5 63 55.6
Os01g0908400 Oryza sativa ssp. japonica HOM05D007493 ORTHO05D009465 5.4e-11 70.5 58 56.9
Lalb_Chr07g0185531 Lupinus albus HOM05D007493 ORTHO05D009465 9.2e-11 69.7 58 58.6
PGR102G3362 Punica granatum HOM05D007493 ORTHO05D009465 9.2e-11 69.7 59 55.9
TWI36G0140 Tripterygium wilfordii HOM05D007493 ORTHO05D009465 9.2e-11 69.7 59 59.3
CSS0003793 Camellia sinensis var. sinensis HOM05D007493 ORTHO05D009465 1.6e-10 68.9 63 54.0
Phvul.002G252800 Phaseolus vulgaris HOM05D007493 ORTHO05D009465 1.6e-10 68.9 63 55.6
ATR0824G181 Amborella trichopoda HOM05D007493 ORTHO05D009465 3.5e-10 67.8 57 54.4
arahy.Tifrunner.gnm1.ann1.48Y6QT Arachis hypogaea HOM05D007493 ORTHO05D009465 3.5e-10 67.8 55 58.2
arahy.Tifrunner.gnm1.ann1.SE4B7G Arachis hypogaea HOM05D007493 ORTHO05D009465 3.5e-10 67.8 55 58.2
PGSC0003DMG400007257 Solanum tuberosum HOM05D007493 ORTHO05D009465 3.5e-10 67.8 62 53.2
ClCG08G017580 Citrullus lanatus HOM05D007493 ORTHO05D009465 2.3e-09 65.1 82 43.9
SHI26864 Sapria himalayana HOM05D007493 ORTHO05D009465 5.0e-09 63.9 62 54.8
Zm00001eb365410 Zea mays HOM05D007493 ORTHO05D009465 2.3e-06 55.1 36 66.7
Solyc05g013905.1 Solanum lycopersicum HOM05D007493 ORTHO05D009465 6.8e-06 53.5 35 65.7


User provided reference genes

Program Settings