Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 2.9e-134 481.9 238 100.0
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 1.8e-80 303.1 163 88.3
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 2.4e-80 302.8 171 84.2
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 3.1e-80 302.4 171 84.8
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 4.1e-80 302.0 163 88.3
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 4.1e-80 302.0 161 88.2
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 7.0e-80 301.2 161 89.4
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 7.0e-80 301.2 163 88.3
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 7.0e-80 301.2 161 88.8
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 9.1e-80 300.8 161 89.4
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 9.1e-80 300.8 161 89.4
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 1.6e-79 300.1 163 89.6
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 2.7e-79 299.3 163 87.7
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 2.7e-79 299.3 163 87.1
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 3.5e-79 298.9 163 89.0
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 3.5e-79 298.9 161 88.2
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 3.5e-79 298.9 161 88.2
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 4.5e-79 298.5 161 87.6
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 4.5e-79 298.5 163 86.5
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 4.5e-79 298.5 163 88.3
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 7.7e-79 297.7 161 88.2
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 7.7e-79 297.7 161 87.0
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 1.0e-78 297.4 161 87.6
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 1.0e-78 297.4 161 87.6
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.0e-78 297.4 163 87.1
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 1.0e-78 297.4 161 87.0
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 1.0e-78 297.4 163 87.1
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 2.2e-78 296.2 161 86.3
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.9e-78 295.8 163 87.1
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 2.9e-78 295.8 163 85.9
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 2.9e-78 295.8 163 86.5
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 5.0e-78 295.0 163 85.9
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 6.5e-78 294.7 161 87.6
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 1.1e-77 293.9 163 87.7
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 1.5e-77 293.5 161 87.0
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 1.5e-77 293.5 161 85.7
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 1.9e-77 293.1 161 84.5
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 2.5e-77 292.7 164 85.4
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 2.5e-77 292.7 158 86.7
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 3.2e-77 292.4 161 84.5
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 4.2e-77 292.0 163 85.3
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 4.2e-77 292.0 163 85.3
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 4.2e-77 292.0 163 85.3
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 4.2e-77 292.0 161 87.0
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 4.2e-77 292.0 161 84.5
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 4.2e-77 292.0 161 86.3
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 5.5e-77 291.6 161 85.7
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 5.5e-77 291.6 161 85.7
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 5.5e-77 291.6 163 85.9
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 7.2e-77 291.2 161 85.7
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 7.2e-77 291.2 161 85.1
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 9.4e-77 290.8 161 83.9
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 9.4e-77 290.8 163 84.7
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 9.4e-77 290.8 163 84.7
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 9.4e-77 290.8 163 85.9
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 1.2e-76 290.4 162 84.6
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 1.2e-76 290.4 163 85.3
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 2.1e-76 289.7 163 84.7
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 2.7e-76 289.3 163 84.7
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 3.6e-76 288.9 161 83.9
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 3.6e-76 288.9 159 86.8
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 3.6e-76 288.9 161 83.9
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 4.7e-76 288.5 163 85.3
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 4.7e-76 288.5 163 84.7
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 6.1e-76 288.1 160 86.2
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 6.1e-76 288.1 176 81.2
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 6.1e-76 288.1 161 85.1
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 8.0e-76 287.7 161 83.2
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 8.0e-76 287.7 161 85.1
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 8.0e-76 287.7 161 85.1
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 1.0e-75 287.3 163 84.7
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 1.8e-75 286.6 157 88.5
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 1.8e-75 286.6 161 84.5
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 1.8e-75 286.6 161 83.2
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.8e-75 286.6 161 85.7
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 3.0e-75 285.8 161 83.9
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 4.0e-75 285.4 161 87.6
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 4.0e-75 285.4 163 84.0
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 5.2e-75 285.0 157 87.9
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 5.2e-75 285.0 157 88.5
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 6.8e-75 284.6 161 87.6
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 6.8e-75 284.6 161 87.6
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 6.8e-75 284.6 161 85.7
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 6.8e-75 284.6 163 82.2
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 6.8e-75 284.6 161 85.7
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 8.8e-75 284.3 157 87.9
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 8.8e-75 284.3 161 83.2
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 1.2e-74 283.9 161 82.6
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 1.2e-74 283.9 159 86.8
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.2e-74 283.9 168 80.4
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 1.5e-74 283.5 161 86.3
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 1.5e-74 283.5 157 87.3
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 1.5e-74 283.5 160 85.6
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 2.0e-74 283.1 157 87.3
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 2.0e-74 283.1 157 87.3
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 2.0e-74 283.1 157 87.3
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 2.6e-74 282.7 161 82.6
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 3.4e-74 282.3 161 85.1
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 5.7e-74 281.6 157 84.7
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 5.7e-74 281.6 161 83.2
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 7.5e-74 281.2 161 84.5
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 9.8e-74 280.8 161 83.9
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 9.8e-74 280.8 161 80.7
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 1.7e-73 280.0 157 87.3
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 1.7e-73 280.0 157 87.3
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 1.7e-73 280.0 161 85.1
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 2.2e-73 279.6 160 83.8
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 2.8e-73 279.3 168 79.2
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 2.8e-73 279.3 160 83.1
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 3.1e-72 275.8 157 86.0
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 4.1e-72 275.4 188 72.3
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 4.1e-72 275.4 160 81.9
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 1.2e-71 273.9 149 87.2
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 2.0e-71 273.1 158 81.0
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 2.7e-71 272.7 181 74.6
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 5.9e-71 271.6 149 86.6
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.3e-70 269.6 216 65.3
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 1.1e-69 267.3 158 79.7
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 2.5e-69 266.2 163 80.4
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 4.7e-68 261.9 161 75.2
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 6.3e-65 251.5 168 73.2
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 1.8e-64 250.0 158 74.7
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 3.8e-62 242.3 158 71.5
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 1.5e-61 240.4 153 71.9
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 2.5e-61 239.6 158 70.9
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 3.0e-54 216.1 148 75.7
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 8.0e-52 208.0 155 63.2
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 4.4e-50 202.2 110 85.5
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 3.0e-46 189.5 100 87.0
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 6.6e-46 188.3 114 78.1
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 2.5e-45 186.4 102 84.3
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 7.3e-45 184.9 100 84.0
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 3.0e-38 162.9 108 65.7
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 2.5e-37 159.8 148 51.4
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 2.5e-37 159.8 149 57.0
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 3.6e-36 156.0 150 53.3
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 1.7e-33 147.1 97 76.3
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 4.6e-31 139.0 70 91.4
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.6e-28 130.6 75 82.7
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 8.1e-28 128.3 68 89.7
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.0e-26 123.6 66 81.8
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 7.6e-26 121.7 78 78.2
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 9.9e-26 121.3 61 90.2
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 1.9e-24 117.1 109 56.9
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 2.4e-24 116.7 71 76.1
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 1.7e-22 110.5 148 41.2
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 1.5e-21 107.5 61 85.2
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 7.3e-21 105.1 61 83.6
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 2.1e-20 103.6 64 76.6
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 1.4e-19 100.9 54 79.6
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 3.1e-19 99.8 54 87.0
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 2.6e-18 96.7 52 84.6
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 3.4e-18 96.3 65 72.3
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 8.4e-17 91.7 128 46.1
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 2.3e-14 83.6 55 72.7
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 5.1e-14 82.4 54 75.9
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 2.8e-12 76.6 51 70.6
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 2.2e-09 67.0 41 70.7
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 2.1e-07 60.5 43 69.8
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 3.5e-07 59.7 35 80.0
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 6.7e-06 55.5 37 75.7


User provided reference genes

Program Settings