Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01000309001 Vitis vinifera HOM05D005144 ORTHO05D006112 2.0e-43 178.7 91 100.0
GSVIVG01019559001 Vitis vinifera HOM05D005144 ORTHO05D006112 4.3e-30 134.4 77 89.6
Dinv37515 Davidia involucrata HOM05D005144 ORTHO05D006112 1.9e-25 119.0 79 77.2
ClCG07G011500 Citrullus lanatus HOM05D005144 ORTHO05D006112 5.5e-25 117.5 77 80.5
TAR375G0238 Trochodendron aralioides HOM05D005144 ORTHO05D006112 7.1e-25 117.1 76 78.9
CSS0010562 Camellia sinensis var. sinensis HOM05D005144 ORTHO05D006112 9.3e-25 116.7 87 74.7
CSS0049427 Camellia sinensis var. sinensis HOM05D005144 ORTHO05D006112 9.3e-25 116.7 87 74.7
MELO3C016277.2 Cucumis melo HOM05D005144 ORTHO05D006112 1.6e-24 115.9 77 79.2
CsaV3_4G006720 Cucumis sativus L. HOM05D005144 ORTHO05D006112 1.6e-24 115.9 77 79.2
Lj4g0014592 Lotus japonicus HOM05D005144 ORTHO05D006112 1.8e-23 112.5 83 71.1
Sed0013108 Sechium edule HOM05D005144 ORTHO05D006112 2.3e-23 112.1 83 72.3
CiPaw.11G119100 Carya illinoinensis HOM05D005144 ORTHO05D006112 3.0e-23 111.7 80 72.5
Rhsim07G0081500 Rhododendron simsii HOM05D005144 ORTHO05D006112 3.0e-23 111.7 90 68.9
CiPaw.12G081400 Carya illinoinensis HOM05D005144 ORTHO05D006112 3.9e-23 111.3 83 71.1
TWI15G0686 Tripterygium wilfordii HOM05D005144 ORTHO05D006112 5.1e-23 110.9 75 74.7
Glyma.05G217900 Glycine max HOM05D005144 ORTHO05D006112 6.7e-23 110.5 86 68.6
Prupe.5G122700 Prunus persica HOM05D005144 ORTHO05D006112 6.7e-23 110.5 80 72.5
Gohir.A02G099500 Gossypium hirsutum HOM05D005144 ORTHO05D006112 8.7e-23 110.2 86 73.3
Sc07g0010100 Simmondsia chinensis HOM05D005144 ORTHO05D006112 8.7e-23 110.2 74 75.7
Phvul.002G299800 Phaseolus vulgaris HOM05D005144 ORTHO05D006112 1.1e-22 109.8 83 69.9
PGR042G3213 Punica granatum HOM05D005144 ORTHO05D006112 1.1e-22 109.8 84 72.6
Glyma.08G024000 Glycine max HOM05D005144 ORTHO05D006112 1.5e-22 109.4 86 68.6
Potri.001G089600 Populus trichocarpa HOM05D005144 ORTHO05D006112 1.5e-22 109.4 82 75.6
COL.COLO4_10724 Corchorus olitorius HOM05D005144 ORTHO05D006112 1.9e-22 109.0 83 74.7
Sabra01G0065900 Salix brachista HOM05D005144 ORTHO05D006112 1.9e-22 109.0 78 74.4
Hund14208 Selenicereus undatus HOM05D005144 ORTHO05D006112 1.9e-22 109.0 79 70.9
Duzib205G1188 Durio zibethinus HOM05D005144 ORTHO05D006112 2.5e-22 108.6 86 72.1
Gorai.003G078400 Gossypium raimondii HOM05D005144 ORTHO05D006112 2.5e-22 108.6 86 72.1
MD14G1130800 Malus domestica HOM05D005144 ORTHO05D006112 2.5e-22 108.6 85 70.6
MD06G1109700 Malus domestica HOM05D005144 ORTHO05D006112 3.3e-22 108.2 83 69.9
Medtr8g099610 Medicago truncatula HOM05D005144 ORTHO05D006112 3.3e-22 108.2 83 67.5
QL02p030059 Quercus lobata HOM05D005144 ORTHO05D006112 3.3e-22 108.2 66 80.3
Actinidia22174 Actinidia chinensis HOM05D005144 ORTHO05D006112 4.3e-22 107.8 90 68.9
CANSAT21G0803 Cannabis sativa HOM05D005144 ORTHO05D006112 4.3e-22 107.8 78 73.1
Eucgr.E00882 Eucalyptus grandis HOM05D005144 ORTHO05D006112 4.3e-22 107.8 87 67.8
Lalb_Chr09g0332261 Lupinus albus HOM05D005144 ORTHO05D006112 4.3e-22 107.8 84 67.9
Duzib084G0361 Durio zibethinus HOM05D005144 ORTHO05D006112 5.7e-22 107.5 86 66.3
Actinidia04180 Actinidia chinensis HOM05D005144 ORTHO05D006112 7.4e-22 107.1 88 69.3
Duzib068G1441 Durio zibethinus HOM05D005144 ORTHO05D006112 7.4e-22 107.1 86 69.8
Manes.02G008400 Manihot esculenta HOM05D005144 ORTHO05D006112 7.4e-22 107.1 84 71.4
Thecc.03G300600 Theobroma cacao HOM05D005144 ORTHO05D006112 7.4e-22 107.1 86 69.8
Ca_17470_v3 Cicer arietinum L. HOM05D005144 ORTHO05D006112 9.7e-22 106.7 86 66.3
Manes.01G052400 Manihot esculenta HOM05D005144 ORTHO05D006112 1.3e-21 106.3 81 70.4
vmacro11343 Vaccinium macrocarpon HOM05D005144 ORTHO05D006112 1.3e-21 106.3 77 74.0
VMungo0251G3542 Vigna mungo HOM05D005144 ORTHO05D006112 1.3e-21 106.3 85 67.1
arahy.Tifrunner.gnm1.ann1.11VL1S Arachis hypogaea HOM05D005144 ORTHO05D006112 1.6e-21 105.9 89 66.3
arahy.Tifrunner.gnm1.ann1.72DNA3 Arachis hypogaea HOM05D005144 ORTHO05D006112 1.6e-21 105.9 89 66.3
Hma1.2p1_0440F.1_g153460 Hydrangea macrophylla HOM05D005144 ORTHO05D006112 1.6e-21 105.9 86 69.8
Nitab4.5_0008496g0030 Nicotiana tabacum HOM05D005144 ORTHO05D006112 2.2e-21 105.5 76 73.7
EL10Ac5g12937 Beta vulgaris HOM05D005144 ORTHO05D006112 2.8e-21 105.1 64 82.8
Gohir.A12G237800 Gossypium hirsutum HOM05D005144 ORTHO05D006112 2.8e-21 105.1 88 68.2
Gohir.D12G238900 Gossypium hirsutum HOM05D005144 ORTHO05D006112 2.8e-21 105.1 88 68.2
Gorai.008G256000 Gossypium raimondii HOM05D005144 ORTHO05D006112 2.8e-21 105.1 88 68.2
vmacro13890 Vaccinium macrocarpon HOM05D005144 ORTHO05D006112 2.8e-21 105.1 90 67.8
Cfa011983 Carpinus fangiana HOM05D005144 ORTHO05D006112 3.7e-21 104.8 64 82.8
Haze_09089 Corylus avellana HOM05D005144 ORTHO05D006112 3.7e-21 104.8 64 82.8
Gohir.D03G084200 Gossypium hirsutum HOM05D005144 ORTHO05D006112 3.7e-21 104.8 76 75.0
Potri.003G141600 Populus trichocarpa HOM05D005144 ORTHO05D006112 3.7e-21 104.8 81 71.6
TAR374G1437 Trochodendron aralioides HOM05D005144 ORTHO05D006112 3.7e-21 104.8 76 73.7
Lalb_Chr05g0224021 Lupinus albus HOM05D005144 ORTHO05D006112 4.8e-21 104.4 85 64.7
RcHm_v2.0_Chr7g0194161 Rosa chinensis HOM05D005144 ORTHO05D006112 4.8e-21 104.4 74 74.3
Ah.12g052690 Amaranthus hybridus HOM05D005144 ORTHO05D006112 6.3e-21 104.0 77 74.0
Migut.E01282 Erythranthe guttata HOM05D005144 ORTHO05D006112 6.3e-21 104.0 73 75.3
Gorai.006G207000 Gossypium raimondii HOM05D005144 ORTHO05D006112 6.3e-21 104.0 72 75.0
Psat7g024160 Pisum sativum HOM05D005144 ORTHO05D006112 6.3e-21 104.0 81 66.7
HPP92_003882 Vanilla planifolia HOM05D005144 ORTHO05D006112 6.3e-21 104.0 61 83.6
Ciclev10021394m.g Citrus clementina HOM05D005144 ORTHO05D006112 8.2e-21 103.6 81 70.4
Hma1.2p1_0359F.1_g135130 Hydrangea macrophylla HOM05D005144 ORTHO05D006112 8.2e-21 103.6 59 86.4
Oeu038551.1 Olea europaea HOM05D005144 ORTHO05D006112 8.2e-21 103.6 74 73.0
AUR62019860 Chenopodium quinoa HOM05D002356 ORTHO05D006112 1.1e-20 103.2 75 78.7
Nitab4.5_0000798g0100 Nicotiana tabacum HOM05D005144 ORTHO05D006112 1.1e-20 103.2 76 72.4
MSTRG.13890 Avicennia marina HOM05D005144 ORTHO05D006112 1.4e-20 102.8 78 71.8
Gohir.D09G184500 Gossypium hirsutum HOM05D005144 ORTHO05D006112 1.4e-20 102.8 86 66.3
SalBow1G0822 Salvia bowleyana HOM05D005144 ORTHO05D006112 1.4e-20 102.8 59 86.4
Solyc08g082560.3 Solanum lycopersicum HOM05D005144 ORTHO05D006112 1.4e-20 102.8 83 66.3
Sopen08g030810 Solanum pennellii HOM05D005144 ORTHO05D006112 1.4e-20 102.8 83 66.3
TWI60G1459 Tripterygium wilfordii HOM05D005144 ORTHO05D006112 1.4e-20 102.8 63 81.0
Gohir.A09G189800 Gossypium hirsutum HOM05D005144 ORTHO05D006112 1.8e-20 102.4 86 65.1
unitig_37.g12128 Utricularia gibba HOM05D000074 ORTHO05D007406 1.8e-20 102.4 82 69.5
Cpa.g.sc634.1 Carica papaya HOM05D005144 ORTHO05D006112 2.4e-20 102.1 84 66.7
Migut.A00621 Erythranthe guttata HOM05D005144 ORTHO05D006112 2.4e-20 102.1 59 86.4
CAN.G567.13 Capsicum annuum HOM05D005144 ORTHO05D006112 3.1e-20 101.7 75 74.7
FvH4_5g04920 Fragaria vesca HOM05D005144 ORTHO05D006112 3.1e-20 101.7 72 73.6
FAN13G1564 Fragaria x ananassa HOM05D005144 ORTHO05D006112 3.1e-20 101.7 72 73.6
FAN18G1164 Fragaria x ananassa HOM05D005144 ORTHO05D006112 3.1e-20 101.7 72 73.6
FAN18G2696 Fragaria x ananassa HOM05D005144 ORTHO05D006112 3.1e-20 101.7 72 73.6
Oeu055032.1 Olea europaea HOM05D005144 ORTHO05D006112 3.1e-20 101.7 72 73.6
TPR.G3399 Trifolium pratense HOM05D005144 ORTHO05D006112 3.1e-20 101.7 101 56.4
Cc08_g16260 Coffea canephora HOM05D005144 ORTHO05D006112 4.1e-20 101.3 64 79.7
AUR62010862 Chenopodium quinoa HOM05D005144 ORTHO05D006112 5.3e-20 100.9 60 83.3
MSTRG.1800 Avicennia marina HOM05D005144 ORTHO05D006112 6.9e-20 100.5 75 72.0
Peaxi162Scf00074g00636 Petunia axillaris HOM05D005144 ORTHO05D006112 6.9e-20 100.5 70 72.9
Atru.chr9.1926 Acer truncatum HOM05D005144 ORTHO05D006112 9.0e-20 100.1 66 80.3
FAN04G3040 Fragaria x ananassa HOM05D005144 ORTHO05D006112 1.2e-19 99.8 65 76.9
AT4G10925 Arabidopsis thaliana HOM05D005144 ORTHO05D006112 2.0e-19 99.0 73 69.9
CARHR255680 Cardamine hirsuta HOM05D005144 ORTHO05D006112 2.0e-19 99.0 73 71.2
SGA_v2.0_scaffold111G31399 Striga asiatica HOM05D005144 ORTHO05D006112 2.0e-19 99.0 74 73.0
ATR0602G269 Amborella trichopoda HOM05D005144 ORTHO05D006112 2.6e-19 98.6 76 67.1
BcaB01g01559 Brassica carinata HOM05D005144 ORTHO05D006112 2.6e-19 98.6 77 68.8
BcaC04g21088 Brassica carinata HOM05D005144 ORTHO05D006112 2.6e-19 98.6 62 79.0
C09p35830 Brassica napus HOM05D005144 ORTHO05D006112 2.6e-19 98.6 62 79.0
BolC9t56417H Brassica oleracea HOM05D005144 ORTHO05D006112 2.6e-19 98.6 62 79.0
Sp6g06570 Schrenkiella parvula HOM05D005144 ORTHO05D006112 2.6e-19 98.6 83 65.1
HanXRQChr17g0534951 Helianthus annuus HOM05D005144 ORTHO05D006112 4.5e-19 97.8 82 64.6
Aa31LG9G11190 Aethionema arabicum HOM05D005144 ORTHO05D006112 5.9e-19 97.4 62 77.4
MSTRG.11913 Avicennia marina HOM05D005144 ORTHO05D006112 5.9e-19 97.4 82 67.1
Thhalv10028928m.g Eutrema salsugineum HOM05D005144 ORTHO05D006112 5.9e-19 97.4 73 69.9
A09p28270 Brassica napus HOM05D005144 ORTHO05D006112 7.6e-19 97.1 62 77.4
Carub.0006s2967 Capsella rubella HOM05D005144 ORTHO05D006112 7.6e-19 97.1 72 72.2
AL6G45020 Arabidopsis lyrata HOM05D005144 ORTHO05D006112 1.7e-18 95.9 57 82.5
Sabra03G0102000 Salix brachista HOM05D005144 ORTHO05D006112 1.7e-18 95.9 74 73.0
THA.LOC104815124 Tarenaya hassleriana HOM05D005144 ORTHO05D006112 1.7e-18 95.9 80 65.0
BraA09t38396Z Brassica rapa HOM05D005144 ORTHO05D006112 2.2e-18 95.5 61 77.0
Lj2C163G16 Lonicera japonica HOM05D005144 ORTHO05D006112 2.2e-18 95.5 52 90.4
Aqoxy5G04282 Aquilegia oxysepala HOM05D005144 ORTHO05D006112 5.0e-18 94.4 58 79.3
CDE10G0687 Ceratophyllum demersum HOM05D005144 ORTHO05D006112 5.0e-18 94.4 72 66.7
ECA246G4745 Erigeron canadensis HOM05D005144 ORTHO05D006112 6.5e-18 94.0 86 61.6
PSO384G2099 Papaver somniferum HOM05D005144 ORTHO05D006112 6.5e-18 94.0 72 70.8
Lsat_1_v5_gn_6_8420 Lactuca sativa HOM05D005144 ORTHO05D006112 8.5e-18 93.6 76 69.7
CDE10G0592 Ceratophyllum demersum HOM05D005144 ORTHO05D006112 1.1e-17 93.2 72 66.7
DCAR_006524 Daucus carota HOM05D005144 ORTHO05D006112 1.1e-17 93.2 73 68.5
Lsat_1_v5_gn_3_11240 Lactuca sativa HOM05D005144 ORTHO05D006112 1.1e-17 93.2 50 90.0
PSO135G1020 Papaver somniferum HOM05D005144 ORTHO05D006112 1.9e-17 92.4 75 66.7
Os01g0550200 Oryza sativa ssp. japonica HOM05D005144 ORTHO05D006112 2.5e-17 92.0 50 88.0
THA.LOC104813044 Tarenaya hassleriana HOM05D005144 ORTHO05D006112 3.2e-17 91.7 52 84.6
MBI07_g40676_MAGBIO Magnolia biondii HOM05D005144 ORTHO05D006112 5.5e-17 90.9 75 62.7
Zm00001eb356530 Zea mays HOM05D005144 ORTHO05D006112 7.2e-17 90.5 49 87.8
Zm00001eb162420 Zea mays HOM05D005144 ORTHO05D006112 2.7e-16 88.6 49 85.7
CBR_g48131 Chara braunii HOM05D005144 ORTHO05D006112 3.9e-15 84.7 58 70.7
SGA_v2.0_scaffold305G47994 Striga asiatica HOM05D005144 ORTHO05D006112 1.5e-14 82.8 76 59.2
SGA_v2.0_scaffold96G29029 Striga asiatica HOM05D005144 ORTHO05D006112 4.3e-14 81.3 75 57.3
Mapoly0024s0042 Marchantia polymorpha HOM05D005144 ORTHO05D006112 5.7e-14 80.9 77 57.1
SEGI_08848 Sequoiadendron giganteum HOM05D005144 ORTHO05D006112 1.3e-13 79.7 49 77.6
SMO356G0181 Selaginella moellendorffii HOM05D005144 ORTHO05D006112 8.2e-13 77.0 49 73.5
VMungo0540G0458 Vigna mungo HOM05D005144 ORTHO05D006112 1.4e-12 76.3 51 74.5
SalBow8G5178 Salvia bowleyana HOM05D005144 ORTHO05D006112 2.4e-12 75.5 66 57.6
CARHR125070 Cardamine hirsuta HOM05D005144 ORTHO05D006112 3.1e-12 75.1 59 59.3
AagrBONN_evm.TU.Sc2ySwM_362.2655 Anthoceros agrestis HOM05D005144 ORTHO05D006112 1.2e-11 73.2 52 67.3
AT4G23960 Arabidopsis thaliana HOM05D005144 ORTHO05D006112 1.4e-09 66.2 46 67.4
Carub.0007s1712 Capsella rubella HOM05D005144 ORTHO05D006112 4.2e-09 64.7 47 63.8


User provided reference genes

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