Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01000303001 Vitis vinifera HOM05D000391 ORTHO05D000293 3.2e-56 221.5 107 100.0
GSVIVG01000310001 Vitis vinifera HOM05D000391 ORTHO05D000293 4.7e-52 207.6 107 93.5
GSVIVG01000287001 Vitis vinifera HOM05D000391 ORTHO05D000293 2.6e-50 201.8 107 89.7
GSVIVG01000293001 Vitis vinifera HOM05D000391 ORTHO05D000293 1.3e-49 199.5 107 91.6
GSVIVG01000829001 Vitis vinifera HOM05D000391 ORTHO05D000293 2.1e-23 112.5 74 71.6
RcHm_v2.0_Chr1g0321341 Rosa chinensis HOM05D000391 ORTHO05D000293 3.0e-22 108.6 87 60.9
TAR623G0413 Trochodendron aralioides HOM05D000391 ORTHO05D000293 6.7e-22 107.5 74 66.2
Prupe.2G031800 Prunus persica HOM05D000391 ORTHO05D000293 2.1e-20 102.4 74 62.2
FAN01G0481 Fragaria x ananassa HOM05D000391 ORTHO05D000293 8.1e-20 100.5 87 57.5
FAN03G1387 Fragaria x ananassa HOM05D000391 ORTHO05D000293 8.1e-20 100.5 87 57.5
FAN10G3361 Fragaria x ananassa HOM05D000391 ORTHO05D000293 1.1e-19 100.1 87 56.3
FvH4_7g02660 Fragaria vesca HOM05D000391 ORTHO05D000293 2.4e-19 99.0 75 61.3
QL04p014202 Quercus lobata HOM05D000391 ORTHO05D000293 2.4e-19 99.0 75 60.0
MD02G1291200 Malus domestica HOM05D000391 ORTHO05D000293 3.1e-19 98.6 74 62.2
FAN06G2403 Fragaria x ananassa HOM05D000391 ORTHO05D000293 4.0e-19 98.2 87 56.3
MD07G1035400 Malus domestica HOM05D000391 ORTHO05D000293 4.0e-19 98.2 74 62.2
CiPaw.13G011900 Carya illinoinensis HOM05D000391 ORTHO05D000293 2.6e-18 95.5 74 56.8
Manes.11G003800 Manihot esculenta HOM05D000391 ORTHO05D000293 4.5e-18 94.7 74 59.5
Potri.001G024900 Populus trichocarpa HOM05D000391 ORTHO05D000293 5.8e-18 94.4 74 60.8
Phvul.011G209400 Phaseolus vulgaris HOM05D000391 ORTHO05D000293 1.3e-17 93.2 86 58.1
Manes.04G165200 Manihot esculenta HOM05D000391 ORTHO05D000293 3.8e-17 91.7 86 52.3
TWI38G2059 Tripterygium wilfordii HOM05D000391 ORTHO05D000293 3.8e-17 91.7 73 61.6
Actinidia06258 Actinidia chinensis HOM05D000391 ORTHO05D000293 4.9e-17 91.3 74 58.1
Glyma.13G200000 Glycine max HOM05D000391 ORTHO05D000293 4.9e-17 91.3 74 60.8
Glyma.15G238400 Glycine max HOM05D000391 ORTHO05D000293 4.9e-17 91.3 73 61.6
Medtr8g038170 Medicago truncatula HOM05D000391 ORTHO05D000293 4.9e-17 91.3 74 59.5
CSS0030559 Camellia sinensis var. sinensis HOM05D000391 ORTHO05D000293 8.4e-17 90.5 74 59.5
Rhsim07G0064800 Rhododendron simsii HOM05D000391 ORTHO05D000293 1.1e-16 90.1 74 58.1
Ca_23918_v3 Cicer arietinum L. HOM05D000391 ORTHO05D000293 1.4e-16 89.7 74 59.5
Lj7C580G4 Lonicera japonica HOM05D000391 ORTHO05D000293 1.9e-16 89.4 72 58.3
Lj3g0012018 Lotus japonicus HOM05D000391 ORTHO05D000293 1.9e-16 89.4 74 58.1
vmacro13741 Vaccinium macrocarpon HOM05D000391 ORTHO05D000293 1.9e-16 89.4 73 56.2
VMungo1127G0995 Vigna mungo HOM05D000391 ORTHO05D000293 1.9e-16 89.4 73 61.6
Lalb_Chr01g0007931 Lupinus albus HOM05D000391 ORTHO05D000293 2.4e-16 89.0 74 56.8
Actinidia06262 Actinidia chinensis HOM05D000391 ORTHO05D000293 3.2e-16 88.6 74 59.5
Actinidia19455 Actinidia chinensis HOM05D000391 ORTHO05D000293 3.2e-16 88.6 74 52.7
PGR031G2969 Punica granatum HOM05D000391 ORTHO05D000293 3.2e-16 88.6 69 55.1
TPR.G9109 Trifolium pratense HOM05D000391 ORTHO05D000293 3.2e-16 88.6 74 59.5
vmacro13737 Vaccinium macrocarpon HOM05D000391 ORTHO05D000293 3.2e-16 88.6 74 58.1
Rhsim07G0065200 Rhododendron simsii HOM05D000391 ORTHO05D000293 5.5e-16 87.8 74 58.1
Thecc.10G169500 Theobroma cacao HOM05D000391 ORTHO05D000293 5.5e-16 87.8 69 58.0
vmacro22976 Vaccinium macrocarpon HOM05D000391 ORTHO05D000293 5.5e-16 87.8 73 54.8
CAN.G134.114 Capsicum annuum HOM05D000391 ORTHO05D000293 1.2e-15 86.7 70 58.6
CAN.G1249.15 Capsicum annuum HOM05D000391 ORTHO05D000293 1.6e-15 86.3 70 55.7
Ciclev10032182m.g Citrus clementina HOM05D000391 ORTHO05D000293 1.6e-15 86.3 73 54.8
Nn7g36606 Nelumbo nucifera HOM05D000391 ORTHO05D000293 1.6e-15 86.3 74 56.8
Atru.chr11.2429 Acer truncatum HOM05D000391 ORTHO05D000293 2.1e-15 85.9 73 56.2
Duzib128G0285 Durio zibethinus HOM05D000391 ORTHO05D000293 2.1e-15 85.9 69 56.5
Sabra01G0018600 Salix brachista HOM05D000391 ORTHO05D000293 2.1e-15 85.9 70 57.1
Actinidia19456 Actinidia chinensis HOM05D000391 ORTHO05D000293 3.5e-15 85.1 74 56.8
Actinidia19453 Actinidia chinensis HOM05D000391 ORTHO05D000293 4.6e-15 84.7 74 55.4
Nitab4.5_0006785g0010 Nicotiana tabacum HOM05D000391 ORTHO05D000293 6.0e-15 84.3 69 56.5
Thecc.10G170200 Theobroma cacao HOM05D000391 ORTHO05D000293 1.0e-14 83.6 73 52.1
COL.COLO4_35435 Corchorus olitorius HOM05D000391 ORTHO05D000293 1.3e-14 83.2 73 52.1
Nitab4.5_0005059g0060 Nicotiana tabacum HOM05D000391 ORTHO05D000293 1.3e-14 83.2 64 59.4
Nn2g14906 Nelumbo nucifera HOM05D000391 ORTHO05D000293 1.8e-14 82.8 74 52.7
Peaxi162Scf01260g00018 Petunia axillaris HOM05D000391 ORTHO05D000293 1.8e-14 82.8 68 55.9
CAN.G134.115 Capsicum annuum HOM05D000391 ORTHO05D000293 2.3e-14 82.4 76 52.6
Nitab4.5_0005729g0030 Nicotiana tabacum HOM05D000391 ORTHO05D000293 2.3e-14 82.4 64 57.8
Sopen01g041180 Solanum pennellii HOM05D000391 ORTHO05D000293 2.3e-14 82.4 70 55.7
CANSAT56G1327 Cannabis sativa HOM05D000391 ORTHO05D000293 3.0e-14 82.0 77 57.1
PSO384G4001 Papaver somniferum HOM05D000391 ORTHO05D000293 3.9e-14 81.6 95 48.4
Peaxi162Scf00282g00014 Petunia axillaris HOM05D000391 ORTHO05D000293 5.1e-14 81.3 70 54.3
Solyc01g097550.4 Solanum lycopersicum HOM05D000391 ORTHO05D000293 5.1e-14 81.3 64 57.8
DCAR_031827 Daucus carota HOM05D000391 ORTHO05D000293 6.7e-14 80.9 62 56.5
Nitab4.5_0005059g0050 Nicotiana tabacum HOM05D000391 ORTHO05D000293 6.7e-14 80.9 64 57.8
PSO339G0116 Papaver somniferum HOM05D000391 ORTHO05D000293 6.7e-14 80.9 73 56.2
Lsat_1_v5_gn_8_114280 Lactuca sativa HOM05D000391 ORTHO05D000293 8.7e-14 80.5 69 52.2
Sopen01g041200 Solanum pennellii HOM05D000391 ORTHO05D000293 8.7e-14 80.5 64 57.8
CAN.G134.117 Capsicum annuum HOM05D000391 ORTHO05D000293 1.1e-13 80.1 64 57.8
Actinidia19452 Actinidia chinensis HOM05D000391 ORTHO05D000293 1.5e-13 79.7 75 50.7
ECA248G3308 Erigeron canadensis HOM05D000006 ORTHO05D000091 1.5e-13 79.7 74 47.3
Nitab4.5_0005582g0030 Nicotiana tabacum HOM05D000391 ORTHO05D000293 1.5e-13 79.7 64 56.2
SHI37244 Sapria himalayana HOM05D000391 ORTHO05D000293 1.5e-13 79.7 84 48.8
PGSC0003DMG400019446 Solanum tuberosum HOM05D000391 ORTHO05D000293 1.5e-13 79.7 70 52.9
Cc00_g06310 Coffea canephora HOM05D000391 ORTHO05D000293 1.9e-13 79.3 75 53.3
Cc00_g03120 Coffea canephora HOM05D000391 ORTHO05D000293 2.5e-13 79.0 69 50.7
Hund13340 Selenicereus undatus HOM05D000391 ORTHO05D000293 3.3e-13 78.6 70 51.4
Gohir.D05G282600 Gossypium hirsutum HOM05D000391 ORTHO05D000293 4.3e-13 78.2 64 56.2
Gorai.009G296000 Gossypium raimondii HOM05D000391 ORTHO05D000293 4.3e-13 78.2 64 56.2
EL10Ac2g02832 Beta vulgaris HOM05D000391 ORTHO05D000293 5.6e-13 77.8 66 51.5
Actinidia19451 Actinidia chinensis HOM05D000391 ORTHO05D000293 1.3e-12 76.6 75 50.7
Cc00_g03150 Coffea canephora HOM05D000391 ORTHO05D000293 1.3e-12 76.6 75 53.3
Eucgr.G03249 Eucalyptus grandis HOM05D000391 ORTHO05D000293 1.6e-12 76.3 74 51.4
unitig_26.g8820 Utricularia gibba HOM05D000391 ORTHO05D000293 1.6e-12 76.3 65 56.9
Oeu015681.1 Olea europaea HOM05D000391 ORTHO05D000293 2.8e-12 75.5 63 55.6
Gohir.A05G280666 Gossypium hirsutum HOM05D000391 ORTHO05D000293 4.8e-12 74.7 60 56.7
MSTRG.20527 Avicennia marina HOM05D000391 ORTHO05D000293 8.2e-12 73.9 70 50.0
MBI19_g24724_MAGBIO Magnolia biondii HOM05D000391 ORTHO05D000293 8.2e-12 73.9 73 47.9
Ah.10g030700 Amaranthus hybridus HOM05D000391 ORTHO05D000293 1.1e-11 73.6 60 55.0
Migut.B01213 Erythranthe guttata HOM05D000391 ORTHO05D000293 1.1e-11 73.6 77 54.5
MBI11_g29017_MAGBIO Magnolia biondii HOM05D000391 ORTHO05D000293 1.1e-11 73.6 73 47.9
Sc11g0006560 Simmondsia chinensis HOM05D000391 ORTHO05D000293 1.4e-11 73.2 68 50.0
Sc10g0004320 Simmondsia chinensis HOM05D000391 ORTHO05D000293 1.2e-10 70.1 73 45.2
AUR62026841 Chenopodium quinoa HOM05D000391 ORTHO05D000293 2.6e-10 68.9 68 48.5
AUR62037212 Chenopodium quinoa HOM05D000391 ORTHO05D000293 3.4e-10 68.6 61 52.5
Gohir.D05G282500 Gossypium hirsutum HOM05D000391 ORTHO05D000293 3.4e-10 68.6 69 42.0
CDE09G0181 Ceratophyllum demersum HOM05D000391 ORTHO05D000293 5.8e-10 67.8 70 44.3
Os05g0382600 Oryza sativa ssp. japonica HOM05D000391 ORTHO05D000293 1.7e-09 66.2 60 51.7
vmacro13736 Vaccinium macrocarpon HOM05D000391 ORTHO05D000293 2.2e-09 65.9 60 55.0
THA.LOC104801741 Tarenaya hassleriana HOM05D000391 ORTHO05D000293 3.8e-09 65.1 76 46.1
Lsat_1_v5_gn_8_114320 Lactuca sativa HOM05D000391 ORTHO05D000293 4.9e-09 64.7 64 45.3
Aa31LG5G20930 Aethionema arabicum HOM05D000391 ORTHO05D000293 6.5e-09 64.3 73 47.9
Gorai.009G295900 Gossypium raimondii HOM05D000391 ORTHO05D000293 6.5e-09 64.3 69 39.1
Gohir.A05G280600 Gossypium hirsutum HOM05D000391 ORTHO05D000293 8.4e-09 63.9 69 39.1
ClCG05G026670 Citrullus lanatus HOM05D000391 ORTHO05D000293 1.9e-08 62.8 65 49.2
MELO3C012456.2 Cucumis melo HOM05D000391 ORTHO05D000293 3.2e-08 62.0 68 48.5
Psat4g146960 Pisum sativum HOM05D000391 ORTHO05D000293 3.2e-08 62.0 51 58.8
CsaV3_5G036600 Cucumis sativus L. HOM05D000391 ORTHO05D000293 5.5e-08 61.2 68 48.5
arahy.Tifrunner.gnm1.ann1.D79IFD Arachis hypogaea HOM05D000391 ORTHO05D000293 9.3e-08 60.5 53 54.7
Zm00001eb286920 Zea mays HOM05D000391 ORTHO05D000293 9.3e-08 60.5 75 42.7
Aqoxy1G00341 Aquilegia oxysepala HOM05D000391 ORTHO05D000293 1.6e-07 59.7 57 56.1
Rhsim07G0202000 Rhododendron simsii HOM05D000391 ORTHO05D000293 1.6e-07 59.7 86 40.7
Lsat_1_v5_gn_9_41421 Lactuca sativa HOM05D000391 ORTHO05D000293 2.1e-07 59.3 64 43.8
vmacro04748 Vaccinium macrocarpon HOM05D000391 ORTHO05D000293 2.1e-07 59.3 93 39.8
arahy.Tifrunner.gnm1.ann1.39EPPD Arachis hypogaea HOM05D000391 ORTHO05D000293 2.7e-07 58.9 52 53.8
Ciclev10001888m.g Citrus clementina HOM05D000391 ORTHO05D000293 2.7e-07 58.9 64 42.2
Psat2g074960 Pisum sativum HOM05D000391 ORTHO05D000293 4.6e-07 58.2 69 39.1
Duzib106G0375 Durio zibethinus HOM05D000391 ORTHO05D000293 7.9e-07 57.4 56 50.0
Sed0022417 Sechium edule HOM05D000391 ORTHO05D000293 1.0e-06 57.0 73 41.1
Aqoxy6G00805 Aquilegia oxysepala HOM05D000391 ORTHO05D000293 1.8e-06 56.2 86 38.4
Medtr5g063670 Medicago truncatula HOM05D000391 ORTHO05D000293 1.8e-06 56.2 69 39.1
THA.LOC104824186 Tarenaya hassleriana HOM05D000391 ORTHO05D000293 1.8e-06 56.2 60 48.3
TPR.G25327 Trifolium pratense HOM05D000391 ORTHO05D000293 2.3e-06 55.8 64 39.1
Cfa013629 Carpinus fangiana HOM05D000391 ORTHO05D000293 3.9e-06 55.1 71 39.4
Lalb_Chr13g0295981 Lupinus albus HOM05D000391 ORTHO05D000293 3.9e-06 55.1 63 42.9
Potri.005G075900 Populus trichocarpa HOM05D000391 ORTHO05D000293 3.9e-06 55.1 64 45.3
Sabra05G0062500 Salix brachista HOM05D000391 ORTHO05D000293 3.9e-06 55.1 64 45.3
AL6G20720 Arabidopsis lyrata HOM05D000391 ORTHO05D000293 5.1e-06 54.7 75 37.3
BcaC02g07448 Brassica carinata HOM05D000391 ORTHO05D000293 5.1e-06 54.7 60 43.3
Ca_12411_v3 Cicer arietinum L. HOM05D000391 ORTHO05D000293 5.1e-06 54.7 64 39.1
Lalb_Chr07g0185171 Lupinus albus HOM05D000391 ORTHO05D000293 5.1e-06 54.7 63 42.9
TWI77G0077 Tripterygium wilfordii HOM05D000391 ORTHO05D000293 5.1e-06 54.7 64 42.2
AL4G36050 Arabidopsis lyrata HOM05D000391 ORTHO05D000293 6.7e-06 54.3 60 43.3
CANSAT11G1477 Cannabis sativa HOM05D000391 ORTHO05D000293 6.7e-06 54.3 61 45.9
Lj1g0014028 Lotus japonicus HOM05D000391 ORTHO05D000293 6.7e-06 54.3 63 39.7
AT2G38750 Arabidopsis thaliana HOM05D000391 ORTHO05D000293 8.7e-06 53.9 60 43.3
arahy.Tifrunner.gnm1.ann1.47PCZJ Arachis hypogaea HOM05D000391 ORTHO05D000293 8.7e-06 53.9 64 42.2
C03p25570 Brassica napus HOM05D000391 ORTHO05D000293 8.7e-06 53.9 60 41.7
BolC3t14944H Brassica oleracea HOM05D000391 ORTHO05D000293 8.7e-06 53.9 60 41.7
BolC4t28188H Brassica oleracea HOM05D000391 ORTHO05D000293 8.7e-06 53.9 60 41.7
Cpa.g.sc157.68 Carica papaya HOM05D000391 ORTHO05D000293 8.7e-06 53.9 78 35.9
DCAR_008728 Daucus carota HOM05D000391 ORTHO05D000293 8.7e-06 53.9 63 41.3
DCAR_014226 Daucus carota HOM05D000391 ORTHO05D000293 8.7e-06 53.9 63 44.4
Manes.12G135200 Manihot esculenta HOM05D000391 ORTHO05D000293 8.7e-06 53.9 64 40.6
Manes.18G068000 Manihot esculenta HOM05D000391 ORTHO05D000293 8.7e-06 53.9 80 35.0
QL06p049559 Quercus lobata HOM05D000391 ORTHO05D000293 8.7e-06 53.9 64 42.2


User provided reference genes

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