Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01000293001 Vitis vinifera HOM05D000391 ORTHO05D000293 4.5e-55 217.6 106 100.0
GSVIVG01000310001 Vitis vinifera HOM05D000391 ORTHO05D000293 2.5e-53 211.8 107 98.1
GSVIVG01000287001 Vitis vinifera HOM05D000391 ORTHO05D000293 2.0e-50 202.2 107 92.5
GSVIVG01000303001 Vitis vinifera HOM05D000391 ORTHO05D000293 1.3e-49 199.5 107 91.6
GSVIVG01000829001 Vitis vinifera HOM05D000391 ORTHO05D000293 2.3e-22 109.0 74 73.0
TAR623G0413 Trochodendron aralioides HOM05D000391 ORTHO05D000293 3.0e-22 108.6 74 70.3
RcHm_v2.0_Chr1g0321341 Rosa chinensis HOM05D000391 ORTHO05D000293 3.9e-22 108.2 87 63.2
Prupe.2G031800 Prunus persica HOM05D000391 ORTHO05D000293 8.1e-20 100.5 74 64.9
Phvul.011G209400 Phaseolus vulgaris HOM05D000391 ORTHO05D000293 4.0e-19 98.2 73 68.5
QL04p014202 Quercus lobata HOM05D000391 ORTHO05D000293 5.2e-19 97.8 75 62.7
FAN01G0481 Fragaria x ananassa HOM05D000391 ORTHO05D000293 1.2e-18 96.7 87 57.5
FAN03G1387 Fragaria x ananassa HOM05D000391 ORTHO05D000293 1.2e-18 96.7 87 57.5
FAN10G3361 Fragaria x ananassa HOM05D000391 ORTHO05D000293 1.2e-18 96.7 87 56.3
Glyma.13G200000 Glycine max HOM05D000391 ORTHO05D000293 1.2e-18 96.7 74 64.9
Glyma.15G238400 Glycine max HOM05D000391 ORTHO05D000293 1.2e-18 96.7 73 67.1
MD02G1291200 Malus domestica HOM05D000391 ORTHO05D000293 1.2e-18 96.7 74 64.9
MD07G1035400 Malus domestica HOM05D000391 ORTHO05D000293 1.5e-18 96.3 74 64.9
Medtr8g038170 Medicago truncatula HOM05D000391 ORTHO05D000293 2.6e-18 95.5 74 64.9
Nn7g36606 Nelumbo nucifera HOM05D000391 ORTHO05D000293 2.6e-18 95.5 73 61.6
VMungo1127G0995 Vigna mungo HOM05D000391 ORTHO05D000293 2.6e-18 95.5 73 67.1
FvH4_7g02660 Fragaria vesca HOM05D000391 ORTHO05D000293 3.4e-18 95.1 75 61.3
FAN06G2403 Fragaria x ananassa HOM05D000391 ORTHO05D000293 5.8e-18 94.4 87 56.3
CiPaw.13G011900 Carya illinoinensis HOM05D000391 ORTHO05D000293 9.8e-18 93.6 74 59.5
Ca_23918_v3 Cicer arietinum L. HOM05D000391 ORTHO05D000293 1.7e-17 92.8 74 63.5
Lj3g0012018 Lotus japonicus HOM05D000391 ORTHO05D000293 1.7e-17 92.8 74 62.2
Potri.001G024900 Populus trichocarpa HOM05D000391 ORTHO05D000293 1.7e-17 92.8 74 63.5
Lalb_Chr01g0007931 Lupinus albus HOM05D000391 ORTHO05D000293 2.9e-17 92.0 74 62.2
Manes.04G165200 Manihot esculenta HOM05D000391 ORTHO05D000293 2.9e-17 92.0 74 62.2
Manes.11G003800 Manihot esculenta HOM05D000391 ORTHO05D000293 2.9e-17 92.0 74 60.8
Lj7C580G4 Lonicera japonica HOM05D000391 ORTHO05D000293 4.9e-17 91.3 72 63.9
Nn2g14906 Nelumbo nucifera HOM05D000391 ORTHO05D000293 4.9e-17 91.3 73 57.5
TPR.G9109 Trifolium pratense HOM05D000391 ORTHO05D000293 4.9e-17 91.3 74 62.2
CAN.G134.114 Capsicum annuum HOM05D000391 ORTHO05D000293 6.4e-17 90.9 71 60.6
DCAR_031827 Daucus carota HOM05D000391 ORTHO05D000293 6.4e-17 90.9 68 60.3
Actinidia06262 Actinidia chinensis HOM05D000391 ORTHO05D000293 8.3e-17 90.5 74 63.5
TWI38G2059 Tripterygium wilfordii HOM05D000391 ORTHO05D000293 8.3e-17 90.5 73 63.0
CSS0030559 Camellia sinensis var. sinensis HOM05D000391 ORTHO05D000293 1.1e-16 90.1 74 63.5
Actinidia06258 Actinidia chinensis HOM05D000391 ORTHO05D000293 1.4e-16 89.7 74 60.8
Rhsim07G0064800 Rhododendron simsii HOM05D000391 ORTHO05D000293 1.9e-16 89.4 74 59.5
Nitab4.5_0005729g0030 Nicotiana tabacum HOM05D000391 ORTHO05D000293 2.4e-16 89.0 69 59.4
PGR031G2969 Punica granatum HOM05D000391 ORTHO05D000293 3.2e-16 88.6 70 57.1
PSO339G0116 Papaver somniferum HOM05D000391 ORTHO05D000293 4.1e-16 88.2 72 58.3
PSO384G4001 Papaver somniferum HOM05D000391 ORTHO05D000293 5.4e-16 87.8 72 58.3
Nitab4.5_0005059g0060 Nicotiana tabacum HOM05D000391 ORTHO05D000293 7.1e-16 87.4 69 58.0
Nitab4.5_0005059g0050 Nicotiana tabacum HOM05D000391 ORTHO05D000293 9.2e-16 87.0 69 58.0
Sopen01g041180 Solanum pennellii HOM05D000391 ORTHO05D000293 1.2e-15 86.7 71 57.7
vmacro13741 Vaccinium macrocarpon HOM05D000391 ORTHO05D000293 1.2e-15 86.7 73 57.5
vmacro22976 Vaccinium macrocarpon HOM05D000391 ORTHO05D000293 1.2e-15 86.7 73 57.5
Actinidia19455 Actinidia chinensis HOM05D000391 ORTHO05D000293 1.6e-15 86.3 74 55.4
CAN.G134.115 Capsicum annuum HOM05D000391 ORTHO05D000293 1.6e-15 86.3 76 56.6
vmacro13737 Vaccinium macrocarpon HOM05D000391 ORTHO05D000293 1.6e-15 86.3 74 59.5
Rhsim07G0065200 Rhododendron simsii HOM05D000391 ORTHO05D000293 3.5e-15 85.1 74 59.5
CAN.G134.117 Capsicum annuum HOM05D000391 ORTHO05D000293 4.6e-15 84.7 69 58.0
Nitab4.5_0005582g0030 Nicotiana tabacum HOM05D000391 ORTHO05D000293 4.6e-15 84.7 69 56.5
Atru.chr11.2429 Acer truncatum HOM05D000391 ORTHO05D000293 7.8e-15 84.0 73 58.9
Ciclev10032182m.g Citrus clementina HOM05D000391 ORTHO05D000293 7.8e-15 84.0 73 56.2
Sabra01G0018600 Salix brachista HOM05D000391 ORTHO05D000293 7.8e-15 84.0 74 56.8
PGSC0003DMG400019446 Solanum tuberosum HOM05D000391 ORTHO05D000293 7.8e-15 84.0 71 54.9
Thecc.10G169500 Theobroma cacao HOM05D000391 ORTHO05D000293 1.0e-14 83.6 70 57.1
Peaxi162Scf01260g00018 Petunia axillaris HOM05D000391 ORTHO05D000293 1.3e-14 83.2 63 60.3
Actinidia19456 Actinidia chinensis HOM05D000391 ORTHO05D000293 1.7e-14 82.8 74 58.1
Nitab4.5_0006785g0010 Nicotiana tabacum HOM05D000391 ORTHO05D000293 2.3e-14 82.4 63 60.3
EL10Ac2g02832 Beta vulgaris HOM05D000391 ORTHO05D000293 3.0e-14 82.0 66 57.6
CAN.G1249.15 Capsicum annuum HOM05D000391 ORTHO05D000293 3.0e-14 82.0 63 60.3
Peaxi162Scf00282g00014 Petunia axillaris HOM05D000391 ORTHO05D000293 3.0e-14 82.0 71 57.7
Cc00_g06310 Coffea canephora HOM05D000391 ORTHO05D000293 5.1e-14 81.3 68 55.9
Duzib128G0285 Durio zibethinus HOM05D000391 ORTHO05D000293 5.1e-14 81.3 70 55.7
Actinidia19453 Actinidia chinensis HOM05D000391 ORTHO05D000293 6.6e-14 80.9 74 56.8
Hund13340 Selenicereus undatus HOM05D000391 ORTHO05D000293 1.1e-13 80.1 71 54.9
Solyc01g097550.4 Solanum lycopersicum HOM05D000391 ORTHO05D000293 1.5e-13 79.7 62 59.7
Sopen01g041200 Solanum pennellii HOM05D000391 ORTHO05D000293 2.5e-13 79.0 62 59.7
Ah.10g030700 Amaranthus hybridus HOM05D000391 ORTHO05D000293 3.3e-13 78.6 68 57.4
Cc00_g03150 Coffea canephora HOM05D000391 ORTHO05D000293 3.3e-13 78.6 68 55.9
ECA248G3308 Erigeron canadensis HOM05D000006 ORTHO05D000091 3.3e-13 78.6 74 51.4
COL.COLO4_35435 Corchorus olitorius HOM05D000391 ORTHO05D000293 4.3e-13 78.2 73 52.1
Oeu015681.1 Olea europaea HOM05D000391 ORTHO05D000293 4.3e-13 78.2 74 52.7
Cc00_g03120 Coffea canephora HOM05D000391 ORTHO05D000293 5.6e-13 77.8 70 52.9
Thecc.10G170200 Theobroma cacao HOM05D000391 ORTHO05D000293 5.6e-13 77.8 73 52.1
Actinidia19452 Actinidia chinensis HOM05D000391 ORTHO05D000293 9.5e-13 77.0 75 53.3
SHI37244 Sapria himalayana HOM05D000391 ORTHO05D000293 1.2e-12 76.6 84 51.2
MSTRG.20527 Avicennia marina HOM05D000391 ORTHO05D000293 1.6e-12 76.3 72 50.0
CANSAT56G1327 Cannabis sativa HOM05D000391 ORTHO05D000293 1.6e-12 76.3 77 54.5
Migut.B01213 Erythranthe guttata HOM05D000391 ORTHO05D000293 1.6e-12 76.3 75 54.7
Eucgr.G03249 Eucalyptus grandis HOM05D000391 ORTHO05D000293 1.6e-12 76.3 73 52.1
unitig_26.g8820 Utricularia gibba HOM05D000391 ORTHO05D000293 2.1e-12 75.9 60 60.0
AUR62026841 Chenopodium quinoa HOM05D000391 ORTHO05D000293 2.8e-12 75.5 68 52.9
Gohir.D05G282600 Gossypium hirsutum HOM05D000391 ORTHO05D000293 2.8e-12 75.5 73 50.7
Gorai.009G296000 Gossypium raimondii HOM05D000391 ORTHO05D000293 2.8e-12 75.5 73 50.7
Lsat_1_v5_gn_8_114280 Lactuca sativa HOM05D000391 ORTHO05D000293 3.6e-12 75.1 70 51.4
MBI19_g24724_MAGBIO Magnolia biondii HOM05D000391 ORTHO05D000293 4.7e-12 74.7 73 53.4
Actinidia19451 Actinidia chinensis HOM05D000391 ORTHO05D000293 6.2e-12 74.3 75 53.3
MBI11_g29017_MAGBIO Magnolia biondii HOM05D000391 ORTHO05D000293 6.2e-12 74.3 73 53.4
Gohir.A05G280666 Gossypium hirsutum HOM05D000391 ORTHO05D000293 1.1e-11 73.6 60 55.0
Sc10g0004320 Simmondsia chinensis HOM05D000391 ORTHO05D000293 1.1e-11 73.6 73 47.9
Sc11g0006560 Simmondsia chinensis HOM05D000391 ORTHO05D000293 1.1e-11 73.6 69 50.7
AUR62037212 Chenopodium quinoa HOM05D000391 ORTHO05D000293 1.8e-11 72.8 61 55.7
Lsat_1_v5_gn_8_114320 Lactuca sativa HOM05D000391 ORTHO05D000293 1.5e-10 69.7 70 45.7
THA.LOC104801741 Tarenaya hassleriana HOM05D000391 ORTHO05D000293 1.5e-10 69.7 72 51.4
Gohir.D05G282500 Gossypium hirsutum HOM05D000391 ORTHO05D000293 3.4e-10 68.6 71 47.9
Aa31LG5G20930 Aethionema arabicum HOM05D000391 ORTHO05D000293 9.9e-10 67.0 72 47.2
Os05g0382600 Oryza sativa ssp. japonica HOM05D000391 ORTHO05D000293 1.3e-09 66.6 60 53.3
CDE09G0181 Ceratophyllum demersum HOM05D000391 ORTHO05D000293 1.7e-09 66.2 69 47.8
vmacro13736 Vaccinium macrocarpon HOM05D000391 ORTHO05D000293 1.7e-09 66.2 60 55.0
Psat4g146960 Pisum sativum HOM05D000391 ORTHO05D000293 3.8e-09 65.1 51 64.7
Rhsim07G0202000 Rhododendron simsii HOM05D000391 ORTHO05D000293 3.8e-09 65.1 93 41.9
Gorai.009G295900 Gossypium raimondii HOM05D000391 ORTHO05D000293 6.4e-09 64.3 71 45.1
Gohir.A05G280600 Gossypium hirsutum HOM05D000391 ORTHO05D000293 8.4e-09 63.9 71 45.1
Aqoxy1G00341 Aquilegia oxysepala HOM05D000391 ORTHO05D000293 1.1e-08 63.5 74 48.6
arahy.Tifrunner.gnm1.ann1.39EPPD Arachis hypogaea HOM05D000391 ORTHO05D000293 1.4e-08 63.2 53 56.6
ClCG05G026670 Citrullus lanatus HOM05D000391 ORTHO05D000293 2.4e-08 62.4 61 52.5
arahy.Tifrunner.gnm1.ann1.D79IFD Arachis hypogaea HOM05D000391 ORTHO05D000293 4.1e-08 61.6 52 55.8
Psat2g074960 Pisum sativum HOM05D000391 ORTHO05D000293 4.1e-08 61.6 73 38.4
AL4G36050 Arabidopsis lyrata HOM05D000391 ORTHO05D000293 7.1e-08 60.8 72 44.4
AT2G38750 Arabidopsis thaliana HOM05D000391 ORTHO05D000293 7.1e-08 60.8 72 44.4
BcaC02g07448 Brassica carinata HOM05D000391 ORTHO05D000293 7.1e-08 60.8 72 43.1
THA.LOC104824186 Tarenaya hassleriana HOM05D000391 ORTHO05D000293 7.1e-08 60.8 60 53.3
MELO3C012456.2 Cucumis melo HOM05D000391 ORTHO05D000293 9.2e-08 60.5 61 52.5
vmacro04748 Vaccinium macrocarpon HOM05D000391 ORTHO05D000293 9.2e-08 60.5 85 41.2
BolC4t28188H Brassica oleracea HOM05D000391 ORTHO05D000293 1.2e-07 60.1 72 41.7
Medtr5g063670 Medicago truncatula HOM05D000391 ORTHO05D000293 1.2e-07 60.1 73 38.4
A03p21570 Brassica napus HOM05D000391 ORTHO05D000293 1.6e-07 59.7 72 41.7
C03p25570 Brassica napus HOM05D000391 ORTHO05D000293 1.6e-07 59.7 72 41.7
C04p66860 Brassica napus HOM05D000391 ORTHO05D000293 1.6e-07 59.7 72 41.7
BolC3t14944H Brassica oleracea HOM05D000391 ORTHO05D000293 1.6e-07 59.7 72 41.7
BraA03t11393Z Brassica rapa HOM05D000391 ORTHO05D000293 1.6e-07 59.7 72 41.7
CsaV3_5G036600 Cucumis sativus L. HOM05D000391 ORTHO05D000293 1.6e-07 59.7 61 52.5
Zm00001eb286920 Zea mays HOM05D000391 ORTHO05D000293 1.6e-07 59.7 75 45.3
Ciclev10001888m.g Citrus clementina HOM05D000391 ORTHO05D000293 2.1e-07 59.3 81 37.0
Actinidia38132 Actinidia chinensis HOM05D000391 ORTHO05D000293 2.7e-07 58.9 93 40.9
A04p29570 Brassica napus HOM05D000391 ORTHO05D000293 2.7e-07 58.9 72 40.3
BraA04t18422Z Brassica rapa HOM05D000391 ORTHO05D000293 2.7e-07 58.9 72 40.3
CARHR133440 Cardamine hirsuta HOM05D000391 ORTHO05D000293 2.7e-07 58.9 72 43.1
TPR.G25327 Trifolium pratense HOM05D000391 ORTHO05D000293 3.5e-07 58.5 73 35.6
Carub.0004s2075 Capsella rubella HOM05D000391 ORTHO05D000293 6.0e-07 57.8 72 43.1
Ca_12411_v3 Cicer arietinum L. HOM05D000391 ORTHO05D000293 6.0e-07 57.8 73 35.6
TWI77G0077 Tripterygium wilfordii HOM05D000391 ORTHO05D000293 6.0e-07 57.8 72 44.4
Aqoxy6G00805 Aquilegia oxysepala HOM05D000391 ORTHO05D000293 7.8e-07 57.4 85 37.6
CANSAT11G1477 Cannabis sativa HOM05D000391 ORTHO05D000293 7.8e-07 57.4 85 40.0
Carub.0006s1088 Capsella rubella HOM05D000391 ORTHO05D000293 1.0e-06 57.0 67 37.3
Lj1g0014028 Lotus japonicus HOM05D000391 ORTHO05D000293 1.0e-06 57.0 72 40.3
Potri.005G075900 Populus trichocarpa HOM05D000391 ORTHO05D000293 1.0e-06 57.0 73 41.1
Sabra05G0062500 Salix brachista HOM05D000391 ORTHO05D000293 1.0e-06 57.0 73 41.1
Lalb_Chr07g0185171 Lupinus albus HOM05D000391 ORTHO05D000293 1.3e-06 56.6 63 44.4
PSO447G0082 Papaver somniferum HOM05D000391 ORTHO05D000293 1.3e-06 56.6 73 38.4
Atru.chr13.1203 Acer truncatum HOM05D000391 ORTHO05D000293 1.7e-06 56.2 93 36.6
AL6G20720 Arabidopsis lyrata HOM05D000391 ORTHO05D000293 1.7e-06 56.2 71 38.0
arahy.Tifrunner.gnm1.ann1.8V8U4B Arachis hypogaea HOM05D000391 ORTHO05D000293 1.7e-06 56.2 72 37.5
arahy.Tifrunner.gnm1.ann1.FUP8YM Arachis hypogaea HOM05D000391 ORTHO05D000293 1.7e-06 56.2 72 37.5
Glyma.13G088700 Glycine max HOM05D000391 ORTHO05D000293 1.7e-06 56.2 73 35.6
Manes.18G068000 Manihot esculenta HOM05D000391 ORTHO05D000293 1.7e-06 56.2 73 37.0
QL06p049559 Quercus lobata HOM05D000391 ORTHO05D000293 1.7e-06 56.2 85 38.8
Lsat_1_v5_gn_9_41421 Lactuca sativa HOM05D000391 ORTHO05D000293 2.3e-06 55.8 73 37.0
Lalb_Chr13g0295981 Lupinus albus HOM05D000391 ORTHO05D000293 2.3e-06 55.8 63 44.4
PSO210G5470 Papaver somniferum HOM05D000391 ORTHO05D000293 2.3e-06 55.8 73 37.0
Phvul.008G173100 Phaseolus vulgaris HOM05D000391 ORTHO05D000293 2.3e-06 55.8 73 37.0
PGR102G1928 Punica granatum HOM05D000391 ORTHO05D000293 2.3e-06 55.8 73 37.0
Sed0022417 Sechium edule HOM05D000391 ORTHO05D000293 2.3e-06 55.8 61 45.9
Cfa013629 Carpinus fangiana HOM05D000391 ORTHO05D000293 3.0e-06 55.5 93 35.5
Thhalv10016965m.g Eutrema salsugineum HOM05D000391 ORTHO05D000293 3.0e-06 55.5 72 38.9
Manes.12G135200 Manihot esculenta HOM05D000391 ORTHO05D000293 3.0e-06 55.5 64 42.2
Sabra07G0076800 Salix brachista HOM05D000391 ORTHO05D000293 3.0e-06 55.5 73 38.4
SalBow5G1354 Salvia bowleyana HOM05D000391 ORTHO05D000293 3.0e-06 55.5 64 43.8
SalBow5G2162 Salvia bowleyana HOM05D000391 ORTHO05D000293 3.0e-06 55.5 64 43.8
Sp4g21110 Schrenkiella parvula HOM05D000391 ORTHO05D000293 3.9e-06 55.1 71 39.4
DCAR_008728 Daucus carota HOM05D000391 ORTHO05D000293 5.1e-06 54.7 63 42.9
Nn1g05338 Nelumbo nucifera HOM05D000391 ORTHO05D000293 5.1e-06 54.7 85 35.3
VMungo0251G1791 Vigna mungo HOM05D000391 ORTHO05D000293 5.1e-06 54.7 73 37.0
Actinidia33141 Actinidia chinensis HOM05D000391 ORTHO05D000293 6.6e-06 54.3 85 37.6
CSS0022554 Camellia sinensis var. sinensis HOM05D000391 ORTHO05D000293 6.6e-06 54.3 85 38.8
Cpa.g.sc36.126 Carica papaya HOM05D000391 ORTHO05D000293 6.6e-06 54.3 81 37.0
Phvul.002G255700 Phaseolus vulgaris HOM05D000391 ORTHO05D000293 6.6e-06 54.3 64 42.2
vmacro12955 Vaccinium macrocarpon HOM05D000391 ORTHO05D000293 6.6e-06 54.3 63 42.9
Zm00001eb017240 Zea mays HOM05D000391 ORTHO05D000293 6.6e-06 54.3 60 40.0
CARHR200730 Cardamine hirsuta HOM05D000391 ORTHO05D000293 8.6e-06 53.9 66 34.8
Haze_02981 Corylus avellana HOM05D000391 ORTHO05D000293 8.6e-06 53.9 76 34.2
Potri.007G092500 Populus trichocarpa HOM05D000391 ORTHO05D000293 8.6e-06 53.9 73 39.7
Sp4g21130 Schrenkiella parvula HOM05D000391 ORTHO05D000293 8.6e-06 53.9 72 38.9
TAR381G0077 Trochodendron aralioides HOM05D000391 ORTHO05D000293 8.6e-06 53.9 92 37.0


User provided reference genes

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