Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 0.0e+00 1201.0 594 100.0
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 2.1e-298 1028.5 590 83.6
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 1.8e-294 1015.4 595 82.9
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 9.0e-294 1013.1 569 85.9
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 2.0e-293 1011.9 590 82.2
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 4.5e-293 1010.7 596 83.1
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 4.5e-293 1010.7 567 85.4
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.3e-292 1009.2 567 85.2
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 7.1e-291 1003.4 599 81.1
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 3.5e-290 1001.1 595 82.7
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 1.0e-289 999.6 602 80.4
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 1.0e-289 999.6 594 81.5
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 2.5e-288 995.0 567 83.2
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 3.3e-288 994.6 572 82.9
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 3.7e-287 991.1 601 80.9
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 8.1e-287 989.9 594 80.6
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 2.0e-285 985.3 567 82.7
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 4.5e-285 984.2 567 82.5
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 4.5e-285 984.2 567 82.5
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.7e-284 982.2 567 82.5
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 4.9e-284 980.7 596 80.7
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 8.4e-284 979.9 602 79.1
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 1.6e-282 975.7 569 82.6
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.6e-282 975.7 567 82.0
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 3.5e-282 974.5 580 81.0
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.3e-281 972.6 619 76.9
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 1.3e-281 972.6 594 79.1
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 1.3e-281 972.6 569 81.5
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 2.3e-281 971.8 619 76.7
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 6.7e-281 970.3 597 78.7
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 6.7e-281 970.3 619 76.7
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 1.5e-280 969.1 574 81.0
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 2.5e-280 968.4 576 80.4
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 2.5e-280 968.4 574 82.2
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 4.3e-280 967.6 619 76.6
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 4.3e-280 967.6 606 77.6
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 5.7e-280 967.2 577 81.3
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 7.4e-280 966.8 575 80.3
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 9.6e-280 966.5 570 80.7
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 2.8e-279 964.9 568 81.0
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 4.8e-279 964.1 593 79.9
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 4.8e-279 964.1 570 81.1
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 8.2e-279 963.4 593 78.6
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 1.8e-278 962.2 566 80.7
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 5.3e-278 960.7 599 79.5
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 6.9e-278 960.3 593 78.2
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 2.6e-277 958.4 565 81.4
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 7.6e-277 956.8 603 77.8
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 1.0e-276 956.4 589 78.8
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 1.7e-276 955.7 569 80.0
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 2.9e-276 954.9 594 77.6
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 5.0e-276 954.1 596 78.2
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 6.5e-276 953.7 595 78.7
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 6.5e-276 953.7 600 77.3
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 8.4e-276 953.4 584 78.8
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 5.5e-275 950.7 580 79.7
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 2.1e-274 948.7 588 77.4
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 2.7e-274 948.3 576 79.2
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 3.5e-274 948.0 599 78.3
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 4.6e-274 947.6 599 78.3
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 4.6e-274 947.6 596 76.3
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 7.9e-274 946.8 573 80.1
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 1.0e-273 946.4 599 78.3
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 1.3e-273 946.0 598 77.3
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 3.9e-273 944.5 598 77.3
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 3.9e-273 944.5 698 69.2
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 6.7e-273 943.7 567 81.0
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 6.7e-273 943.7 596 76.7
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 7.4e-272 940.3 567 79.9
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 9.7e-272 939.9 597 77.9
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 1.1e-270 936.4 615 75.4
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 1.4e-270 936.0 594 75.9
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 2.4e-270 935.3 572 78.5
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 4.1e-270 934.5 596 77.7
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 4.1e-270 934.5 615 75.1
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 1.2e-269 932.9 600 76.7
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 1.5e-269 932.6 587 78.7
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 1.5e-269 932.6 600 75.8
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 2.6e-269 931.8 575 79.3
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 2.6e-269 931.8 602 76.9
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 3.4e-269 931.4 600 77.0
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 1.3e-268 929.5 601 76.7
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 1.3e-268 929.5 608 74.7
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 1.7e-268 929.1 539 81.8
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 5.0e-268 927.5 597 74.9
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 6.5e-268 927.2 567 78.7
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 8.5e-268 926.8 572 77.4
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 8.5e-268 926.8 548 82.3
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 1.1e-267 926.4 590 76.6
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 4.2e-267 924.5 603 74.0
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 5.5e-267 924.1 632 74.1
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 1.2e-266 922.9 602 76.2
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 1.2e-266 922.9 594 76.9
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 1.2e-266 922.9 603 74.1
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 1.6e-266 922.5 595 76.1
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 2.3e-265 918.7 600 76.5
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 1.5e-264 916.0 599 74.5
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 2.0e-264 915.6 570 76.0
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 3.3e-264 914.8 597 74.7
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 1.7e-263 912.5 601 74.4
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 2.2e-263 912.1 614 74.3
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 2.2e-263 912.1 598 74.1
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 6.3e-263 910.6 597 74.7
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 6.3e-263 910.6 600 74.3
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 8.2e-263 910.2 568 78.7
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 6.9e-262 907.1 598 75.3
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 1.2e-261 906.4 598 74.4
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 1.2e-261 906.4 598 75.3
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 1.5e-261 906.0 569 76.4
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 2.0e-261 905.6 597 74.2
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 4.5e-261 904.4 519 84.4
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 5.9e-261 904.0 588 75.7
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 7.7e-261 903.7 598 74.2
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 1.0e-260 903.3 602 74.4
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 1.3e-260 902.9 599 73.8
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 1.7e-260 902.5 573 76.1
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 6.5e-260 900.6 573 75.9
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 3.9e-257 891.3 600 74.0
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 1.0e-252 876.7 603 73.1
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 9.4e-251 870.2 519 81.3
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 2.4e-246 855.5 496 82.7
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 3.8e-244 848.2 927 51.9
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 9.8e-240 833.6 594 68.0
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 9.1e-238 827.0 540 72.2
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.2e-237 826.6 891 52.4
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 9.5e-219 763.8 567 67.2
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 9.8e-216 753.8 567 66.3
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 3.2e-214 748.8 596 62.4
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 3.1e-209 732.3 536 69.4
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 5.8e-208 728.0 401 86.8
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 1.7e-199 699.9 592 56.8
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 2.7e-197 692.6 451 72.9
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 3.5e-181 639.0 340 91.2
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 3.8e-175 619.0 433 74.1
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 5.9e-160 568.5 419 70.4
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 6.5e-151 538.5 307 86.3
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 1.1e-150 537.7 580 48.3
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.1e-139 501.1 443 63.2
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 4.0e-116 422.9 349 57.9
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 5.0e-103 379.4 438 44.1
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 3.7e-98 363.2 629 36.6
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 1.1e-94 351.7 570 34.7
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 2.8e-93 347.1 213 73.7
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 5.8e-91 339.3 188 89.4
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 1.6e-85 321.2 234 65.8
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.2e-83 315.1 218 72.5
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 4.9e-74 283.1 234 62.4
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 4.9e-74 283.1 234 62.4
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 1.3e-71 275.0 382 40.1
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 6.2e-69 266.2 160 76.9
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 6.9e-68 262.7 165 75.2
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 1.4e-65 255.0 366 36.1
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 4.8e-53 213.4 230 51.7
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 2.8e-45 187.6 109 84.4
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 3.9e-31 140.6 72 93.1
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 4.4e-30 137.1 110 58.2
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 3.1e-28 131.0 165 45.5
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 9.1e-28 129.4 161 46.0
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 1.6e-19 102.1 105 56.2
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 1.8e-15 88.6 42 90.5
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 4.8e-13 80.5 49 71.4
AUR62044516 Chenopodium quinoa HOM05D004337 ORTHO05D021976 4.8e-13 80.5 49 71.4
SHI11402 Sapria himalayana HOM05D000039 ORTHO05D006865 8.2e-13 79.7 48 68.8
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 2.7e-11 74.7 43 76.7
CDE05G0837 Ceratophyllum demersum HOM05D004337 ORTHO05D043897 2.9e-10 71.2 75 50.7


User provided reference genes

Program Settings