Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 5.4e-275 950.3 452 100.0
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.0e-260 902.9 452 93.8
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 4.2e-259 897.5 452 93.6
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 7.4e-248 860.1 450 88.9
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 9.7e-248 859.8 447 89.7
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 2.2e-247 858.6 451 88.5
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 2.4e-246 855.1 452 88.5
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 6.9e-246 853.6 452 87.4
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 1.5e-245 852.4 453 88.5
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 2.6e-245 851.7 453 88.3
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.0e-244 849.7 453 88.3
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 6.5e-244 847.0 453 88.3
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.5e-243 845.1 450 86.9
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 4.2e-243 844.3 450 87.8
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 4.2e-243 844.3 450 86.9
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 2.7e-242 841.6 450 87.3
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 3.6e-242 841.3 450 86.4
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 4.6e-242 840.9 450 88.2
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 1.0e-241 839.7 453 87.6
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 1.4e-241 839.3 453 87.6
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 1.4e-241 839.3 449 87.1
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 1.8e-241 839.0 453 87.6
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 2.3e-241 838.6 450 86.2
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 3.0e-241 838.2 450 88.2
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 3.0e-241 838.2 450 88.2
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 3.0e-241 838.2 450 87.1
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.1e-240 836.3 453 84.8
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 4.4e-240 834.3 450 85.8
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 9.7e-240 833.2 450 85.1
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.3e-239 832.8 450 84.9
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 2.2e-239 832.0 450 86.0
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 3.7e-239 831.2 450 86.0
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 3.7e-239 831.2 450 85.8
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 8.2e-239 830.1 450 86.4
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 1.1e-238 829.7 442 88.0
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 4.1e-238 827.8 450 86.0
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 4.1e-238 827.8 450 85.8
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 6.9e-238 827.0 450 85.3
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 1.2e-237 826.2 450 86.2
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 1.5e-237 825.9 450 85.1
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 2.6e-237 825.1 452 85.8
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 3.4e-237 824.7 460 83.3
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 4.5e-237 824.3 449 84.9
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 5.9e-237 823.9 448 85.5
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 7.7e-237 823.5 447 85.9
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 7.7e-237 823.5 450 86.0
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 7.7e-237 823.5 449 85.3
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 1.0e-236 823.2 450 84.9
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 1.3e-236 822.8 429 89.5
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 2.2e-236 822.0 445 85.4
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 2.9e-236 821.6 450 84.9
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 6.5e-236 820.5 449 85.5
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 2.5e-235 818.5 450 84.7
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 4.2e-235 817.8 447 85.2
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 5.5e-235 817.4 450 83.6
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 7.2e-235 817.0 450 83.8
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 7.2e-235 817.0 448 85.5
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 1.2e-234 816.2 447 86.1
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.6e-234 815.8 450 84.4
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 1.6e-234 815.8 453 83.7
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.1e-234 815.5 444 86.0
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 2.1e-234 815.5 496 77.6
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 2.1e-234 815.5 449 84.2
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 2.7e-234 815.1 450 84.0
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 3.6e-234 814.7 450 83.6
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 3.6e-234 814.7 450 83.6
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 7.9e-234 813.5 450 85.1
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 7.9e-234 813.5 450 83.6
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 1.0e-233 813.1 444 84.2
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 1.0e-233 813.1 450 84.7
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 1.4e-233 812.8 450 84.7
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 2.3e-233 812.0 450 83.6
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 6.7e-233 810.4 440 85.5
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 1.1e-232 809.7 450 83.3
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 1.5e-232 809.3 443 85.1
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 4.4e-232 807.7 449 84.0
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 4.4e-232 807.7 443 85.1
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 5.7e-232 807.4 448 83.7
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 7.4e-232 807.0 450 83.1
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 9.7e-232 806.6 450 83.6
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 9.7e-232 806.6 449 83.3
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 1.3e-231 806.2 449 83.3
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 1.3e-231 806.2 449 83.3
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 1.3e-231 806.2 447 83.7
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 1.7e-231 805.8 449 83.5
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.7e-231 805.8 450 83.1
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 1.7e-231 805.8 445 85.4
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 3.7e-231 804.7 450 83.1
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 8.2e-231 803.5 453 82.3
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 2.4e-230 802.0 450 81.8
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 5.3e-230 800.8 457 82.7
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 1.6e-229 799.3 450 82.7
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 1.6e-229 799.3 481 79.2
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 2.0e-229 798.9 443 84.4
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 4.5e-229 797.7 469 80.4
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 1.7e-228 795.8 450 82.2
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 3.8e-228 794.7 433 85.0
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 5.5e-227 790.8 447 84.8
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 8.0e-226 786.9 444 83.1
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 6.3e-223 777.3 450 80.9
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 3.1e-222 775.0 449 79.3
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 7.0e-222 773.9 446 81.4
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 2.7e-221 771.9 447 79.0
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 1.3e-220 769.6 450 80.7
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 1.9e-219 765.8 446 82.1
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 2.5e-219 765.4 412 86.7
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 2.6e-216 755.4 450 80.2
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 7.5e-216 753.8 450 78.2
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 3.6e-210 734.9 448 79.5
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 1.5e-203 713.0 376 87.8
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 1.8e-201 706.1 454 75.6
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 5.7e-200 701.0 445 72.6
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 2.0e-197 692.6 448 73.4
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.7e-197 692.2 461 73.5
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 2.3e-196 689.1 377 82.8
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.9e-195 686.0 388 82.2
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 8.9e-193 677.2 448 71.9
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 9.2e-190 667.2 454 72.9
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.5e-179 632.5 457 70.5
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 3.3e-179 632.1 333 89.8
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 5.1e-164 581.6 434 68.2
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 3.8e-159 565.5 294 90.1
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 7.9e-157 557.8 453 64.0
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 3.0e-156 555.8 300 87.3
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 3.4e-152 542.3 316 77.8
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 5.8e-144 515.0 288 83.7
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 2.3e-132 476.5 441 59.0
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 6.7e-124 448.4 379 58.3
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 8.5e-119 431.4 295 68.1
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.0e-108 397.9 280 67.9
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 1.3e-90 337.8 199 76.4
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 3.0e-79 300.1 159 86.8
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 1.4e-68 264.6 140 87.1
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.3e-68 263.8 149 79.9
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 4.0e-68 263.1 153 77.1
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 1.3e-66 258.1 195 67.7
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 2.9e-66 256.9 153 72.5
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 3.2e-65 253.4 149 81.2
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 6.0e-64 249.2 277 47.3
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 7.8e-64 248.8 147 77.6
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 5.6e-62 242.7 156 69.2
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 7.3e-54 215.7 135 77.0
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 9.3e-49 198.7 138 68.1
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 1.0e-47 195.3 110 85.5
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 1.4e-41 174.9 118 70.3
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 4.6e-40 169.9 132 61.4
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.3e-23 115.2 55 92.7
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.1e-20 105.5 78 64.1
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 3.1e-20 104.0 72 66.7
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.0e-18 99.0 66 69.7
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.3e-18 98.6 66 66.7
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 8.5e-18 95.9 77 61.0
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 8.5e-18 95.9 64 65.6
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 3.6e-16 90.5 83 53.0
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 2.3e-15 87.8 67 61.2
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 2.0e-14 84.7 55 65.5
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 7.4e-14 82.8 67 56.7
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 3.1e-12 77.4 58 58.6
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 2.0e-11 74.7 41 75.6
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.7e-10 71.6 64 50.0
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 4.2e-09 67.0 36 80.6
PRCOL_00001243 Prasinoderma coloniale HOM05D004306 ORTHO05D005055 1.2e-08 65.5 427 23.0


User provided reference genes

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