Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01000104001 Vitis vinifera HOM05D003063 ORTHO05D003242 6.8e-87 323.9 161 100.0
GSVIVG01002076001 Vitis vinifera HOM05D003063 ORTHO05D003242 8.7e-58 227.3 161 78.9
Cfa004133 Carpinus fangiana HOM05D003401 ORTHO05D003906 4.5e-38 161.8 159 53.5
QL06p039562 Quercus lobata HOM05D003063 ORTHO05D003242 1.3e-37 160.2 166 52.4
Actinidia16426 Actinidia chinensis HOM05D002283 ORTHO05D008228 3.9e-34 148.7 161 52.8
Duzib147G1538 Durio zibethinus HOM05D003063 ORTHO05D003242 5.1e-34 148.3 162 50.6
TWI73G0373 Tripterygium wilfordii HOM05D003063 ORTHO05D003242 8.7e-34 147.5 156 52.6
Rhsim08G0093400 Rhododendron simsii HOM05D003063 ORTHO05D003242 5.7e-33 144.8 164 45.1
Oeu011986.1 Olea europaea HOM05D003063 ORTHO05D003242 1.6e-32 143.3 158 51.3
Dinv26934 Davidia involucrata HOM05D003063 ORTHO05D003242 4.8e-32 141.7 159 52.8
Gohir.A11G214800 Gossypium hirsutum HOM05D003063 ORTHO05D003242 1.4e-31 140.2 159 48.4
Gohir.D11G208600 Gossypium hirsutum HOM05D003063 ORTHO05D003242 3.1e-31 139.0 159 50.3
Gorai.007G223600 Gossypium raimondii HOM05D003063 ORTHO05D003242 4.1e-31 138.7 159 50.3
CiPaw.01G004400 Carya illinoinensis HOM05D003063 ORTHO05D003242 2.6e-30 136.0 159 46.5
THA.LOC104827634 Tarenaya hassleriana HOM05D003063 ORTHO05D003242 3.4e-30 135.6 159 46.5
AL8G43750 Arabidopsis lyrata HOM05D003063 ORTHO05D003242 7.6e-30 134.4 159 44.0
Ciclev10027120m.g Citrus clementina HOM05D003063 ORTHO05D003242 1.0e-29 134.0 156 48.7
Prupe.6G220300 Prunus persica HOM05D003063 ORTHO05D003242 1.7e-29 133.3 159 45.3
Sp2g29100 Schrenkiella parvula HOM05D003063 ORTHO05D003242 1.7e-29 133.3 159 46.5
AT5G67550 Arabidopsis thaliana HOM05D003063 ORTHO05D003242 3.8e-29 132.1 159 44.7
Carub.0008s2692 Capsella rubella HOM05D003063 ORTHO05D003242 3.8e-29 132.1 159 44.0
Nitab4.5_0000142g0080 Nicotiana tabacum HOM05D003063 ORTHO05D003242 3.8e-29 132.1 158 48.1
A02p44150 Brassica napus HOM05D003063 ORTHO05D003242 6.5e-29 131.3 159 44.7
BraA02t09338Z Brassica rapa HOM05D003063 ORTHO05D003242 6.5e-29 131.3 159 44.7
BolC2t12505H Brassica oleracea HOM05D003063 ORTHO05D003242 8.5e-29 131.0 159 44.7
C02p64410 Brassica napus HOM05D003063 ORTHO05D003242 1.1e-28 130.6 159 44.7
Cpa.g.sc6.14 Carica papaya HOM05D003063 ORTHO05D003242 1.4e-28 130.2 160 45.0
Sc07g0000540 Simmondsia chinensis HOM05D003063 ORTHO05D003242 1.9e-28 129.8 160 41.9
TAR381G1137 Trochodendron aralioides HOM05D003063 ORTHO05D003242 1.9e-28 129.8 164 45.1
CARHR280040 Cardamine hirsuta HOM05D003063 ORTHO05D003242 2.5e-28 129.4 159 42.8
BcaB04g20046 Brassica carinata HOM05D003063 ORTHO05D003242 3.2e-28 129.0 159 45.3
BcaC04g23234 Brassica carinata HOM05D003063 ORTHO05D003242 3.2e-28 129.0 161 44.7
CAN.G1075.39 Capsicum annuum HOM05D003063 ORTHO05D003242 3.2e-28 129.0 158 48.1
Cc07_g07110 Coffea canephora HOM05D003063 ORTHO05D003242 4.2e-28 128.6 157 46.5
C09p10860 Brassica napus HOM05D003063 ORTHO05D003242 5.5e-28 128.3 161 44.7
Thhalv10005509m.g Eutrema salsugineum HOM05D003063 ORTHO05D003242 7.2e-28 127.9 159 45.3
Sopen02g036900 Solanum pennellii HOM05D003063 ORTHO05D003242 7.2e-28 127.9 158 46.2
FvH4_1g17750 Fragaria vesca HOM05D003063 ORTHO05D003242 9.3e-28 127.5 157 43.9
Solyc02g092350.3 Solanum lycopersicum HOM05D003063 ORTHO05D003242 3.6e-27 125.6 99 58.6
Lj2g0021519 Lotus japonicus HOM05D003063 ORTHO05D003242 7.9e-27 124.4 157 43.3
TPR.G9937 Trifolium pratense HOM05D003063 ORTHO05D003242 1.3e-26 123.6 158 44.3
VMungo1215G2377 Vigna mungo HOM05D003063 ORTHO05D003242 1.3e-26 123.6 159 44.0
FAN19G2514 Fragaria x ananassa HOM05D003063 ORTHO05D003242 1.8e-26 123.2 157 43.3
PGSC0003DMG400021416 Solanum tuberosum HOM05D003063 ORTHO05D003242 1.8e-26 123.2 99 57.6
A09p09280 Brassica napus HOM05D003063 ORTHO05D003242 3.0e-26 122.5 161 45.3
BraA09t36581Z Brassica rapa HOM05D003063 ORTHO05D003242 3.0e-26 122.5 161 45.3
FAN23G1757 Fragaria x ananassa HOM05D003063 ORTHO05D003242 3.0e-26 122.5 157 43.3
Glyma.11G047500 Glycine max HOM05D003063 ORTHO05D003242 8.8e-26 120.9 159 44.0
MD02G1186300 Malus domestica HOM05D003063 ORTHO05D003242 8.8e-26 120.9 158 41.1
Manes.12G114901 Manihot esculenta HOM05D003063 ORTHO05D003242 1.1e-25 120.6 164 40.2
Phvul.002G010500 Phaseolus vulgaris HOM05D003063 ORTHO05D003242 1.1e-25 120.6 159 43.4
Psat2g171600 Pisum sativum HOM05D003063 ORTHO05D003242 2.5e-25 119.4 157 42.7
Thecc.01G072900 Theobroma cacao HOM05D003063 ORTHO05D003242 5.7e-25 118.2 145 49.7
Ah.02g125400 Amaranthus hybridus HOM05D003063 ORTHO05D003242 2.2e-24 116.3 161 41.0
Lalb_Chr09g0323611 Lupinus albus HOM05D003063 ORTHO05D003242 2.2e-24 116.3 173 42.2
PGR102G0884 Punica granatum HOM05D003063 ORTHO05D003242 2.2e-24 116.3 166 38.6
Atru.chr3.1013 Acer truncatum HOM05D003063 ORTHO05D003242 3.7e-24 115.5 162 40.1
PSO541G1933 Papaver somniferum HOM05D003063 ORTHO05D003242 6.3e-24 114.8 159 42.1
PSO675G8643 Papaver somniferum HOM05D003063 ORTHO05D003242 6.3e-24 114.8 159 42.1
Migut.H00346 Erythranthe guttata HOM05D003063 ORTHO05D003242 1.8e-23 113.2 159 40.9
Lsat_1_v5_gn_4_161620 Lactuca sativa HOM05D003063 ORTHO05D003242 4.1e-23 112.1 163 40.5
HanXRQChr12g0373031 Helianthus annuus HOM05D003063 ORTHO05D003242 7.7e-22 107.8 164 42.7
BcaC03g18366 Brassica carinata HOM05D003063 ORTHO05D003242 1.0e-21 107.5 104 50.0
Eucgr.H02308 Eucalyptus grandis HOM05D003063 ORTHO05D003242 1.0e-21 107.5 88 58.0
Haze_15281 Corylus avellana HOM05D003063 ORTHO05D003242 1.7e-21 106.7 157 43.3
Nitab4.5_0002119g0070 Nicotiana tabacum HOM05D003063 ORTHO05D003242 1.7e-21 106.7 170 40.6
Aa31LG1G16100 Aethionema arabicum HOM05D003063 ORTHO05D003242 2.9e-21 105.9 157 37.6
Aqoxy6G02607 Aquilegia oxysepala HOM05D003063 ORTHO05D003242 2.9e-21 105.9 158 37.3
Medtr5g015390 Medicago truncatula HOM05D003063 ORTHO05D003242 6.5e-21 104.8 114 48.2
ECA232G0232 Erigeron canadensis HOM05D003063 ORTHO05D003242 5.5e-20 101.7 161 39.8
COL.COLO4_11579 Corchorus olitorius HOM05D003063 ORTHO05D003242 1.2e-19 100.5 162 40.1
SGA_v2.0_scaffold15G07460 Striga asiatica HOM05D003063 ORTHO05D003242 1.0e-18 97.4 159 37.7
EL10Ac6g15616 Beta vulgaris HOM05D003063 ORTHO05D003242 4.4e-17 92.0 156 38.5
Sopen12g021200 Solanum pennellii HOM05D003063 ORTHO05D003242 4.4e-17 92.0 95 47.4
CSS0003630 Camellia sinensis var. sinensis HOM05D003063 ORTHO05D003242 3.2e-12 75.9 156 33.3
CiPaw.01G095400 Carya illinoinensis HOM05D003063 ORTHO05D003242 4.2e-12 75.5 153 30.1
SEGI_41356 Sequoiadendron giganteum HOM05D003063 ORTHO05D003242 9.4e-12 74.3 156 32.1
TAR362G0372 Trochodendron aralioides HOM05D003063 ORTHO05D003242 1.2e-11 73.9 146 32.2
Atru.chr4.1282 Acer truncatum HOM05D003063 ORTHO05D003242 1.6e-11 73.6 89 41.6
TAR633G0315 Trochodendron aralioides HOM05D003063 ORTHO05D003242 2.7e-11 72.8 89 41.6
Aqoxy4G00265 Aquilegia oxysepala HOM05D003063 ORTHO05D003242 3.6e-11 72.4 146 29.5
AUR62023827 Chenopodium quinoa HOM05D003063 ORTHO05D003242 3.6e-11 72.4 89 40.4
GSVIVG01004107001 Vitis vinifera HOM05D003063 ORTHO05D003242 4.7e-11 72.0 89 41.6
arahy.Tifrunner.gnm1.ann1.7H1L6U Arachis hypogaea HOM05D003063 ORTHO05D003242 6.1e-11 71.6 157 31.8
TAR633G1477 Trochodendron aralioides HOM05D003063 ORTHO05D003242 8.0e-11 71.2 75 45.3
Oeu022687.1 Olea europaea HOM05D003063 ORTHO05D003242 1.0e-10 70.9 76 44.7
Hund12400 Selenicereus undatus HOM05D003063 ORTHO05D003242 1.0e-10 70.9 78 42.3
AUR62002358 Chenopodium quinoa HOM05D003063 ORTHO05D003242 1.4e-10 70.5 76 43.4
vmacro18025 Vaccinium macrocarpon HOM05D003063 ORTHO05D003242 2.3e-10 69.7 56 55.4
ClCG07G011700 Citrullus lanatus HOM05D003063 ORTHO05D003242 3.0e-10 69.3 149 29.5
COL.COLO4_06571 Corchorus olitorius HOM05D003063 ORTHO05D003242 3.0e-10 69.3 75 42.7
Manes.11G126100 Manihot esculenta HOM05D003063 ORTHO05D003242 3.0e-10 69.3 76 40.8
Duzib151G0337 Durio zibethinus HOM05D003063 ORTHO05D003242 3.9e-10 68.9 103 36.9
Lj6A108T23 Lonicera japonica HOM05D003063 ORTHO05D003242 3.9e-10 68.9 85 42.4
RcHm_v2.0_Chr2g0108061 Rosa chinensis HOM05D003063 ORTHO05D003242 3.9e-10 68.9 157 31.8
ATR0743G154 Amborella trichopoda HOM05D003063 ORTHO05D003242 5.2e-10 68.6 78 41.0
Migut.N03092 Erythranthe guttata HOM05D003063 ORTHO05D003242 5.2e-10 68.6 79 43.0
Nn1g09564 Nelumbo nucifera HOM05D003063 ORTHO05D003242 5.2e-10 68.6 89 40.4
Sopen03g014490 Solanum pennellii HOM05D003063 ORTHO05D003242 6.7e-10 68.2 98 39.8
arahy.Tifrunner.gnm1.ann1.L590LZ Arachis hypogaea HOM05D003063 ORTHO05D003242 8.8e-10 67.8 157 31.8
HanXRQChr03g0090201 Helianthus annuus HOM05D003063 ORTHO05D003242 8.8e-10 67.8 76 42.1
Nn7g37566 Nelumbo nucifera HOM05D003063 ORTHO05D003242 8.8e-10 67.8 89 39.3
QL10p051682 Quercus lobata HOM05D003063 ORTHO05D003242 8.8e-10 67.8 79 40.5
Cpa.g.sc9.325 Carica papaya HOM05D003063 ORTHO05D003242 1.1e-09 67.4 74 43.2
ECA240G0473 Erigeron canadensis HOM05D003063 ORTHO05D003242 1.1e-09 67.4 76 40.8
Gohir.D10G126000 Gossypium hirsutum HOM05D003063 ORTHO05D003242 1.1e-09 67.4 75 41.3
Lsat_1_v5_gn_3_111480 Lactuca sativa HOM05D003063 ORTHO05D003242 1.1e-09 67.4 76 42.1
Gorai.011G139000 Gossypium raimondii HOM05D003063 ORTHO05D003242 1.5e-09 67.0 75 41.3
Lalb_Chr24g0396721 Lupinus albus HOM05D003063 ORTHO05D003242 1.5e-09 67.0 104 31.7
CANSAT78G0998 Cannabis sativa HOM05D003063 ORTHO05D003242 2.0e-09 66.6 89 38.2
Potri.017G023400 Populus trichocarpa HOM05D003063 ORTHO05D003242 2.0e-09 66.6 76 39.5
MSTRG.24571 Avicennia marina HOM05D003063 ORTHO05D003242 2.6e-09 66.2 76 43.4
MSTRG.22013 Avicennia marina HOM05D003063 ORTHO05D003242 3.3e-09 65.9 75 38.7
Psat5g290560 Pisum sativum HOM05D003063 ORTHO05D003242 3.3e-09 65.9 89 36.0
CsaV3_4G002510 Cucumis sativus L. HOM05D003063 ORTHO05D003242 4.4e-09 65.5 76 39.5
DCAR_028419 Daucus carota HOM05D003063 ORTHO05D003242 4.4e-09 65.5 151 26.5
Dinv05088 Davidia involucrata HOM05D003063 ORTHO05D003242 4.4e-09 65.5 85 36.5
HanXRQChr13g0419471 Helianthus annuus HOM05D003063 ORTHO05D003242 4.4e-09 65.5 76 40.8
Actinidia34575 Actinidia chinensis HOM05D003063 ORTHO05D003242 5.7e-09 65.1 76 39.5
Oeu035189.1 Olea europaea HOM05D003063 ORTHO05D003242 5.7e-09 65.1 76 39.5
Solyc12g042120.3 Solanum lycopersicum HOM05D003063 ORTHO05D003242 5.7e-09 65.1 70 47.1
Gohir.A10G140900 Gossypium hirsutum HOM05D003063 ORTHO05D003242 7.4e-09 64.7 75 40.0
Thecc.04G172800 Theobroma cacao HOM05D003063 ORTHO05D003242 7.4e-09 64.7 89 37.1
TWI63G1624 Tripterygium wilfordii HOM05D003063 ORTHO05D003242 7.4e-09 64.7 92 35.9
Cc03_g12310 Coffea canephora HOM05D003063 ORTHO05D003242 9.7e-09 64.3 69 46.4
HanXRQChr13g0419461 Helianthus annuus HOM05D003063 ORTHO05D003242 9.7e-09 64.3 77 40.3
Eucgr.H00339 Eucalyptus grandis HOM05D003063 ORTHO05D003242 1.3e-08 63.9 85 37.6
Sed0026282 Sechium edule HOM05D003063 ORTHO05D003242 1.3e-08 63.9 78 38.5
Sopen08g004890 Solanum pennellii HOM05D003063 ORTHO05D003242 1.3e-08 63.9 164 28.0
arahy.Tifrunner.gnm1.ann1.01HRZR Arachis hypogaea HOM05D003063 ORTHO05D003242 1.7e-08 63.5 89 38.2
Sabra17G0001800 Salix brachista HOM05D003063 ORTHO05D003242 1.7e-08 63.5 76 42.1
Solyc08g014010.4 Solanum lycopersicum HOM05D003063 ORTHO05D003242 2.2e-08 63.2 164 28.7
arahy.Tifrunner.gnm1.ann1.J2NQJ1 Arachis hypogaea HOM05D003063 ORTHO05D003242 2.8e-08 62.8 89 33.7
arahy.Tifrunner.gnm1.ann1.NI516C Arachis hypogaea HOM05D003063 ORTHO05D003242 2.8e-08 62.8 89 33.7
MBI16_g23887_MAGBIO Magnolia biondii HOM05D003063 ORTHO05D003242 2.8e-08 62.8 159 27.7
PGR142G1686 Punica granatum HOM05D003063 ORTHO05D003242 2.8e-08 62.8 75 38.7
Lj3g0000361 Lotus japonicus HOM05D003063 ORTHO05D003242 3.7e-08 62.4 89 31.5
PGSC0003DMG400014614 Solanum tuberosum HOM05D003063 ORTHO05D003242 3.7e-08 62.4 89 39.3
Manes.04G047800 Manihot esculenta HOM05D003063 ORTHO05D003242 4.8e-08 62.0 69 40.6
Phvul.011G052700 Phaseolus vulgaris HOM05D003063 ORTHO05D003242 4.8e-08 62.0 84 32.1
Sabra07G0107600 Salix brachista HOM05D003063 ORTHO05D003242 4.8e-08 62.0 80 38.8
Hund13953 Selenicereus undatus HOM05D003063 ORTHO05D003242 6.3e-08 61.6 157 28.7
THA.LOC104804510 Tarenaya hassleriana HOM05D003063 ORTHO05D003242 8.2e-08 61.2 85 35.3
MBI07_g05951_MAGBIO Magnolia biondii HOM05D003063 ORTHO05D003242 1.1e-07 60.8 104 31.7
Solyc06g073140.2 Solanum lycopersicum HOM05D003063 ORTHO05D003242 1.1e-07 60.8 77 39.0
VMungo1080G0015 Vigna mungo HOM05D003063 ORTHO05D003242 1.1e-07 60.8 104 31.7
Ciclev10019609m.g Citrus clementina HOM05D003063 ORTHO05D003242 1.4e-07 60.5 89 33.7
Lj3g0022705 Lotus japonicus HOM05D003063 ORTHO05D003242 1.4e-07 60.5 85 32.9
PSO837G0062 Papaver somniferum HOM05D003063 ORTHO05D003242 1.4e-07 60.5 146 27.4
Prupe.1G199700 Prunus persica HOM05D003063 ORTHO05D003242 1.4e-07 60.5 76 39.5
Sopen06g029490 Solanum pennellii HOM05D003063 ORTHO05D003242 1.8e-07 60.1 76 43.4
HPP92_023721 Vanilla planifolia HOM05D003063 ORTHO05D003242 1.8e-07 60.1 77 32.5
Phvul.005G154700 Phaseolus vulgaris HOM05D003063 ORTHO05D003242 2.4e-07 59.7 76 34.2
Peaxi162Scf00180g00520 Petunia axillaris HOM05D003063 ORTHO05D003242 3.1e-07 59.3 76 38.2
Potri.007G132601 Populus trichocarpa HOM05D003063 ORTHO05D003242 3.1e-07 59.3 80 37.5
unitig_578.g16252 Utricularia gibba HOM05D003063 ORTHO05D003242 5.3e-07 58.5 107 31.8
VMungo1127G1949 Vigna mungo HOM05D003063 ORTHO05D003242 5.3e-07 58.5 84 29.8
TPR.G6513 Trifolium pratense HOM05D003063 ORTHO05D003242 7.0e-07 58.2 76 35.5
Peaxi162Scf00075g01551 Petunia axillaris HOM05D003063 ORTHO05D003242 9.1e-07 57.8 66 47.0
MSTRG.4290 Avicennia marina HOM05D003063 ORTHO05D003242 1.2e-06 57.4 84 33.3
SMO364G0048 Selaginella moellendorffii HOM05D003063 ORTHO05D003242 1.2e-06 57.4 104 32.7
Os11g0264500 Oryza sativa ssp. japonica HOM05D003063 ORTHO05D003242 1.6e-06 57.0 74 35.1
Pp3c10_8020 Physcomitrium patens HOM05D001077 ORTHO05D003242 1.6e-06 57.0 156 25.6
Ca_24691_v3 Cicer arietinum L. HOM05D003063 ORTHO05D003242 2.6e-06 56.2 54 50.0
Zm00001eb168740 Zea mays HOM05D003063 ORTHO05D003242 2.6e-06 56.2 72 33.3
PSO017G4804 Papaver somniferum HOM05D003063 ORTHO05D003242 3.5e-06 55.8 146 26.7
CSS0005943 Camellia sinensis var. sinensis HOM05D003063 ORTHO05D003242 5.9e-06 55.1 48 47.9
CSS0015309 Camellia sinensis var. sinensis HOM05D003063 ORTHO05D003242 5.9e-06 55.1 48 47.9
Hma1.2p1_0487F.1_g163580 Hydrangea macrophylla HOM05D003063 ORTHO05D003242 5.9e-06 55.1 54 44.4
Medtr2g099140 Medicago truncatula HOM05D003063 ORTHO05D003242 5.9e-06 55.1 89 34.8
Pp3c2_14290 Physcomitrium patens HOM05D001077 ORTHO05D003242 5.9e-06 55.1 145 24.8


User provided reference genes

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