Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01000081001 Vitis vinifera HOM05D006420 ORTHO05D008009 1.3e-182 642.9 322 100.0
Lj9A85G78 Lonicera japonica HOM05D006420 ORTHO05D008009 4.3e-109 398.7 270 72.2
Lj9A86G16 Lonicera japonica HOM05D006420 ORTHO05D008009 4.3e-109 398.7 270 72.6
Dinv23938 Davidia involucrata HOM05D006420 ORTHO05D008009 6.3e-108 394.8 280 70.7
TAR636G1821 Trochodendron aralioides HOM05D006420 ORTHO05D008009 2.9e-105 386.0 284 68.3
Hma1.2p1_0928F.1_g237740 Hydrangea macrophylla HOM05D006420 ORTHO05D008009 5.0e-105 385.2 268 71.6
Actinidia05697 Actinidia chinensis HOM05D006420 ORTHO05D008009 1.4e-104 383.6 267 70.8
PGR083G0891 Punica granatum HOM05D006420 ORTHO05D008009 4.2e-104 382.1 265 70.9
TAR365G0270 Trochodendron aralioides HOM05D006420 ORTHO05D008009 2.1e-103 379.8 281 69.4
CSS0034260 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 4.7e-103 378.6 268 69.4
CSS0037657 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 3.0e-102 375.9 268 69.0
Nn1g02269 Nelumbo nucifera HOM05D006420 ORTHO05D008009 1.1e-101 374.0 283 66.4
Manes.08G120400 Manihot esculenta HOM05D006420 ORTHO05D008009 1.5e-101 373.6 272 67.6
Solyc01g099130.3 Solanum lycopersicum HOM05D006420 ORTHO05D008009 2.0e-101 373.2 269 68.0
Sopen01g042690 Solanum pennellii HOM05D006420 ORTHO05D008009 9.7e-101 370.9 269 67.3
COL.COLO4_13456 Corchorus olitorius HOM05D006420 ORTHO05D008009 2.2e-100 369.8 267 68.9
RhsimUnG0226900 Rhododendron simsii HOM05D006420 ORTHO05D008009 4.8e-100 368.6 233 77.7
Gohir.D08G227700 Gossypium hirsutum HOM05D006420 ORTHO05D008009 1.4e-99 367.1 269 69.1
Gorai.004G241900 Gossypium raimondii HOM05D006420 ORTHO05D008009 1.4e-99 367.1 269 69.1
PGSC0003DMG400024687 Solanum tuberosum HOM05D006420 ORTHO05D008009 1.4e-99 367.1 269 66.2
Thecc.05G302400 Theobroma cacao HOM05D006420 ORTHO05D008009 1.4e-99 367.1 235 75.7
CANSAT54G1557 Cannabis sativa HOM05D006420 ORTHO05D008009 3.1e-99 365.9 269 69.5
Nitab4.5_0000137g0140 Nicotiana tabacum HOM05D006420 ORTHO05D008009 3.1e-99 365.9 269 65.1
MSTRG.5100 Avicennia marina HOM05D006420 ORTHO05D008009 5.3e-99 365.2 264 68.2
Hund21694 Selenicereus undatus HOM05D006420 ORTHO05D008009 5.3e-99 365.2 271 70.1
Lsat_1_v5_gn_9_123421 Lactuca sativa HOM05D006420 ORTHO05D008009 9.1e-99 364.4 263 67.7
Gohir.A08G210900 Gossypium hirsutum HOM05D006420 ORTHO05D008009 1.6e-98 363.6 269 68.4
Cc02_g33350 Coffea canephora HOM05D006420 ORTHO05D008009 2.6e-98 362.8 227 75.8
EL10Ac4g09358 Beta vulgaris HOM05D006420 ORTHO05D008009 4.5e-98 362.1 271 66.1
Ciclev10002177m.g Citrus clementina HOM05D006420 ORTHO05D008009 2.2e-97 359.8 270 67.4
CAN.G1034.41 Capsicum annuum HOM05D006420 ORTHO05D008009 3.8e-97 359.0 254 69.7
Duzib177G0348 Durio zibethinus HOM05D006420 ORTHO05D008009 8.5e-97 357.8 267 66.3
Oeu010909.1 Olea europaea HOM05D006420 ORTHO05D008009 1.1e-96 357.5 262 66.8
Aqoxy5G00493 Aquilegia oxysepala HOM05D006420 ORTHO05D008009 1.5e-96 357.1 270 65.6
Nn4g26277 Nelumbo nucifera HOM05D006420 ORTHO05D008009 1.9e-96 356.7 236 73.3
Cpa.g.sc48.61 Carica papaya HOM05D006420 ORTHO05D008009 1.6e-95 353.6 267 66.3
AUR62000819 Chenopodium quinoa HOM05D006420 ORTHO05D008009 2.1e-95 353.2 268 65.3
Peaxi162Scf00037g00513 Petunia axillaris HOM05D006420 ORTHO05D008009 2.1e-95 353.2 230 72.6
AUR62005152 Chenopodium quinoa HOM05D006420 ORTHO05D008009 3.6e-95 352.4 278 65.1
MD04G1204800 Malus domestica HOM05D006420 ORTHO05D008009 3.6e-95 352.4 266 66.5
FAN14G2531 Fragaria x ananassa HOM05D006420 ORTHO05D008009 4.7e-95 352.1 276 63.0
MD12G1218500 Malus domestica HOM05D006420 ORTHO05D008009 4.7e-95 352.1 269 66.5
Cfa006594 Carpinus fangiana HOM05D006420 ORTHO05D008009 8.0e-95 351.3 224 75.4
Lalb_Chr21g0310681 Lupinus albus HOM05D006420 ORTHO05D008009 8.0e-95 351.3 269 66.9
Sed0005627 Sechium edule HOM05D006420 ORTHO05D008009 1.8e-94 350.1 275 64.4
Prupe.6G324800 Prunus persica HOM05D006420 ORTHO05D008009 3.0e-94 349.4 276 64.1
Duzib106G1877 Durio zibethinus HOM05D006420 ORTHO05D008009 5.2e-94 348.6 224 75.9
Glyma.20G234300 Glycine max HOM05D006420 ORTHO05D008009 5.2e-94 348.6 288 62.8
CiPaw.07G020700 Carya illinoinensis HOM05D006420 ORTHO05D008009 6.7e-94 348.2 224 75.4
PSO210G7816 Papaver somniferum HOM05D006420 ORTHO05D008009 2.0e-93 346.7 271 64.6
Cfa006595 Carpinus fangiana HOM05D006420 ORTHO05D008009 2.6e-93 346.3 224 74.6
vmacro05011 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 5.7e-93 345.1 224 74.1
FAN09G3808 Fragaria x ananassa HOM05D006420 ORTHO05D008009 9.7e-93 344.4 276 61.6
THA.LOC104820863 Tarenaya hassleriana HOM05D006420 ORTHO05D008009 1.3e-92 344.0 274 63.5
DCAR_029409 Daucus carota HOM05D006420 ORTHO05D008009 1.7e-92 343.6 224 73.7
Sc06g0003280 Simmondsia chinensis HOM05D006420 ORTHO05D008009 2.8e-92 342.8 224 75.0
Psat6g150480 Pisum sativum HOM05D006420 ORTHO05D008009 3.7e-92 342.4 268 66.0
FvH4_6g06020 Fragaria vesca HOM05D006420 ORTHO05D008009 2.4e-91 339.7 276 60.9
Glyma.10G154000 Glycine max HOM05D006420 ORTHO05D008009 4.1e-91 339.0 269 63.9
Ah.04g160290 Amaranthus hybridus HOM05D006420 ORTHO05D008009 7.0e-91 338.2 244 68.9
CsaV3_2G005340 Cucumis sativus L. HOM05D006420 ORTHO05D008009 9.1e-91 337.8 275 62.9
Atru.chr2.393 Acer truncatum HOM05D006420 ORTHO05D008009 1.2e-90 337.4 269 62.5
Phvul.007G179700 Phaseolus vulgaris HOM05D006420 ORTHO05D008009 1.2e-90 337.4 269 63.2
TWI56G0424 Tripterygium wilfordii HOM05D006420 ORTHO05D008009 1.2e-90 337.4 270 63.7
RcHm_v2.0_Chr3g0454981 Rosa chinensis HOM05D006420 ORTHO05D008009 1.6e-90 337.0 281 61.2
QL03p007116 Quercus lobata HOM05D006420 ORTHO05D008009 2.0e-90 336.7 275 63.6
Ca_10114_v3 Cicer arietinum L. HOM05D006420 ORTHO05D008009 4.5e-90 335.5 231 71.4
Migut.N01987 Erythranthe guttata HOM05D006420 ORTHO05D008009 1.3e-89 334.0 238 68.5
Migut.N02012 Erythranthe guttata HOM05D006420 ORTHO05D008009 1.3e-89 334.0 238 68.5
ClCG02G015760 Citrullus lanatus HOM05D006420 ORTHO05D008009 5.0e-89 332.0 276 62.0
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 8.5e-89 331.3 268 62.7
ATR0332G062 Amborella trichopoda HOM05D006420 ORTHO05D008009 8.5e-89 331.3 266 59.4
FAN05G3282 Fragaria x ananassa HOM05D006420 ORTHO05D008009 8.5e-89 331.3 276 60.1
FAN02G2504 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.5e-88 330.5 233 68.2
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 1.9e-88 330.1 247 68.4
BcaC06g31763 Brassica carinata HOM05D006420 ORTHO05D008009 2.5e-88 329.7 244 66.8
Medtr1g082950 Medicago truncatula HOM05D006420 ORTHO05D008009 1.2e-87 327.4 228 70.6
VMungo0720G1765 Vigna mungo HOM05D006420 ORTHO05D008009 4.7e-87 325.5 266 62.0
FAN05G1000 Fragaria x ananassa HOM05D006420 ORTHO05D008009 6.1e-87 325.1 294 57.1
Thhalv10023646m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 8.0e-87 324.7 267 61.0
HPP92_020377 Vanilla planifolia HOM05D006420 ORTHO05D008009 1.0e-86 324.3 262 62.2
A03p68650 Brassica napus HOM05D006420 ORTHO05D008009 3.0e-86 322.8 244 65.6
BraSC39t46193Z Brassica rapa HOM05D006420 ORTHO05D008009 3.0e-86 322.8 244 65.6
arahy.Tifrunner.gnm1.ann1.GHU2GX Arachis hypogaea HOM05D006420 ORTHO05D008009 5.2e-86 322.0 222 72.1
Lj5g0015213 Lotus japonicus HOM05D006420 ORTHO05D008009 8.8e-86 321.2 229 69.0
arahy.Tifrunner.gnm1.ann1.7ESY4D Arachis hypogaea HOM05D006420 ORTHO05D008009 1.2e-85 320.9 222 72.1
BcaC02g10755 Brassica carinata HOM05D006420 ORTHO05D008009 4.4e-85 318.9 270 60.7
C04p25420 Brassica napus HOM05D006420 ORTHO05D008009 4.4e-85 318.9 270 60.7
BolC4t24060H Brassica oleracea HOM05D006420 ORTHO05D008009 4.4e-85 318.9 270 60.7
Carub.0002s0818 Capsella rubella HOM05D006420 ORTHO05D008009 3.1e-83 312.8 221 68.8
CARHR287540 Cardamine hirsuta HOM05D006420 ORTHO05D008009 3.1e-83 312.8 223 68.2
SpUn0004_0090 Schrenkiella parvula HOM05D006420 ORTHO05D008009 2.0e-82 310.1 221 69.2
AL1G65580 Arabidopsis lyrata HOM05D006420 ORTHO05D008009 3.5e-82 309.3 223 68.2
Haze_04190 Corylus avellana HOM05D006420 ORTHO05D008009 1.7e-81 307.0 323 51.7
AT1G55000 Arabidopsis thaliana HOM05D006420 ORTHO05D008009 1.5e-80 303.9 223 67.3
Nitab4.5_0005541g0070 Nicotiana tabacum HOM05D006420 ORTHO05D008009 1.9e-80 303.5 269 56.5
Potri.013G021600 Populus trichocarpa HOM05D006420 ORTHO05D008009 1.2e-79 300.8 226 68.1
MBI04_g29616_MAGBIO Magnolia biondii HOM05D006420 ORTHO05D008009 2.7e-79 299.7 186 75.3
HanXRQChr16g0524621 Helianthus annuus HOM05D006420 ORTHO05D008009 4.0e-78 295.8 218 66.1
ECA232G4325 Erigeron canadensis HOM05D006420 ORTHO05D008009 1.5e-77 293.9 221 64.7
Sabra13G0024000 Salix brachista HOM05D006420 ORTHO05D008009 2.6e-77 293.1 245 62.9
SGA_v2.0_scaffold81G26063 Striga asiatica HOM05D006420 ORTHO05D000105 7.7e-74 281.6 471 37.4
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 1.6e-71 273.9 222 63.5
Zm00001eb054020 Zea mays HOM05D006420 ORTHO05D008009 2.1e-71 273.5 207 59.9
Os03g0699600 Oryza sativa ssp. japonica HOM05D006420 ORTHO05D008009 7.0e-67 258.5 207 58.5
Pp3c16_5370 Physcomitrium patens HOM05D006420 ORTHO05D008009 9.8e-61 238.0 216 55.1
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 1.5e-53 214.2 170 60.6
AagrBONN_evm.TU.Sc2ySwM_368.542 Anthoceros agrestis HOM05D006420 ORTHO05D008009 2.9e-52 209.9 212 50.5
Potri.005G032100 Populus trichocarpa HOM05D006420 ORTHO05D008009 9.2e-51 204.9 163 63.2
SMO356G0643 Selaginella moellendorffii HOM05D006420 ORTHO05D008009 1.6e-50 204.1 207 49.3
Rhsim07G0185100 Rhododendron simsii HOM05D006420 ORTHO05D008009 2.3e-49 200.3 125 78.4
MD10G1167700 Malus domestica HOM05D006420 ORTHO05D008009 1.5e-45 187.6 117 73.5
Eucgr.B01949 Eucalyptus grandis HOM05D006420 ORTHO05D008009 6.0e-42 175.6 112 74.1
Eucgr.B01859 Eucalyptus grandis HOM05D006420 ORTHO05D008009 6.6e-41 172.2 108 74.1
Eucgr.B01946 Eucalyptus grandis HOM05D006420 ORTHO05D008009 1.2e-39 167.9 105 75.2
QL03p007970 Quercus lobata HOM05D006420 ORTHO05D008009 3.1e-38 163.3 115 71.3
QL03p007144 Quercus lobata HOM05D006420 ORTHO05D008009 2.6e-37 160.2 116 71.6
vmacro23281 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 1.9e-35 154.1 99 72.7
Sabra05G0034600 Salix brachista HOM05D006420 ORTHO05D008009 9.0e-30 135.2 134 53.0
Cre16.g667100 Chlamydomonas reinhardtii HOM05D006420 ORTHO05D008009 1.1e-22 111.7 220 31.4
SEGI_28170 Sequoiadendron giganteum HOM05D006420 ORTHO05D008009 2.4e-22 110.5 83 65.1
vmacro23282 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 1.9e-16 90.9 100 52.0
QL03p007977 Quercus lobata HOM05D006420 ORTHO05D008009 6.2e-15 85.9 76 56.6
QL03p007137 Quercus lobata HOM05D006420 ORTHO05D008009 1.8e-14 84.3 67 61.2
Thhalv10024156m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 1.0e-09 68.6 98 40.8
GSVIVG01012047001 Vitis vinifera HOM05D002624 ORTHO05D002796 4.8e-07 59.7 88 35.2
SalBow5G0658 Salvia bowleyana HOM05D041286 ORTHO05D008009 1.4e-06 58.2 43 65.1


User provided reference genes

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