Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01000035001 Vitis vinifera HOM05D006625 ORTHO05D008060 7.5e-180 633.6 300 100.0
Ciclev10002145m.g Citrus clementina HOM05D006625 ORTHO05D008060 3.3e-111 405.6 273 70.0
Cfa006572 Carpinus fangiana HOM05D006625 ORTHO05D008060 8.2e-110 401.0 272 69.9
Prupe.6G327800 Prunus persica HOM05D006625 ORTHO05D008060 1.1e-106 390.6 272 69.9
Dinv40271 Davidia involucrata HOM05D006625 ORTHO05D008060 1.9e-106 389.8 276 69.9
QL03p005837 Quercus lobata HOM05D006625 ORTHO05D008060 1.0e-104 384.0 271 67.5
CiPaw.07G016100 Carya illinoinensis HOM05D006625 ORTHO05D008060 2.5e-103 379.4 272 66.9
Actinidia19797 Actinidia chinensis HOM05D006625 ORTHO05D008060 4.3e-103 378.6 268 70.1
Potri.005G035600 Populus trichocarpa HOM05D006625 ORTHO05D008060 7.4e-103 377.9 266 66.2
Hma1.2p1_0617F.1_g190230 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 4.8e-102 375.2 255 70.6
CSS0023168 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 6.3e-102 374.8 266 69.9
TAR362G1087 Trochodendron aralioides HOM05D006625 ORTHO05D008060 2.2e-99 366.3 271 65.7
Duzib106G0694 Durio zibethinus HOM05D006625 ORTHO05D008060 3.8e-99 365.5 275 62.9
Manes.09G165400 Manihot esculenta HOM05D006625 ORTHO05D008060 3.8e-99 365.5 257 67.3
CANSAT54G0428 Cannabis sativa HOM05D006625 ORTHO05D008060 1.4e-98 363.6 259 64.1
Cpa.g.sc48.33 Carica papaya HOM05D006625 ORTHO05D008060 2.5e-98 362.8 274 63.5
arahy.Tifrunner.gnm1.ann1.A4Z4CH Arachis hypogaea HOM05D006625 ORTHO05D008060 4.2e-98 362.1 268 63.1
Thecc.05G305300 Theobroma cacao HOM05D006625 ORTHO05D008060 7.2e-98 361.3 276 62.3
arahy.Tifrunner.gnm1.ann1.P1SK02 Arachis hypogaea HOM05D006625 ORTHO05D008060 1.2e-97 360.5 268 63.1
PGSC0003DMG400028585 Solanum tuberosum HOM05D006625 ORTHO05D008060 2.1e-97 359.8 262 64.9
Nitab4.5_0005388g0010 Nicotiana tabacum HOM05D006625 ORTHO05D008060 4.6e-97 358.6 273 63.4
ClCG02G015910 Citrullus lanatus HOM05D006625 ORTHO05D008060 1.0e-96 357.5 262 61.8
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.0e-96 357.5 273 65.2
RcHm_v2.0_Chr3g0454381 Rosa chinensis HOM05D006625 ORTHO05D008060 2.3e-96 356.3 267 66.3
FvH4_6g05630 Fragaria vesca HOM05D006625 ORTHO05D008060 6.7e-96 354.8 267 66.7
FAN14G5181 Fragaria x ananassa HOM05D001310 ORTHO05D008060 8.8e-96 354.4 280 63.9
vmacro19631 Vaccinium macrocarpon HOM05D006625 ORTHO05D008060 8.8e-96 354.4 255 67.1
CsaV3_2G005130 Cucumis sativus L. HOM05D006625 ORTHO05D008060 1.1e-95 354.0 268 60.8
Sopen01g042370 Solanum pennellii HOM05D006625 ORTHO05D008060 1.1e-95 354.0 260 64.6
Cc00_g15580 Coffea canephora HOM05D006625 ORTHO05D008060 2.5e-95 352.8 288 60.1
FAN09G2049 Fragaria x ananassa HOM05D001310 ORTHO05D008060 3.3e-95 352.4 282 63.1
MD04G1207100 Malus domestica HOM05D006625 ORTHO05D008060 5.7e-95 351.7 272 62.9
FAN14G5649 Fragaria x ananassa HOM05D001310 ORTHO05D008060 9.7e-95 350.9 273 64.8
Solyc01g098830.3 Solanum lycopersicum HOM05D006625 ORTHO05D008060 9.7e-95 350.9 260 64.2
Lalb_Chr21g0310751 Lupinus albus HOM05D006625 ORTHO05D008060 2.2e-94 349.7 261 63.6
Sabra05G0036200 Salix brachista HOM05D006625 ORTHO05D008060 3.7e-94 349.0 282 59.6
Lj5g0018133 Lotus japonicus HOM05D006625 ORTHO05D008060 6.3e-94 348.2 268 61.6
COL.COLO4_13497 Corchorus olitorius HOM05D006625 ORTHO05D008060 8.2e-94 347.8 271 60.9
Glyma.20G232800 Glycine max HOM05D006625 ORTHO05D008060 1.1e-93 347.4 254 64.2
Nitab4.5_0002031g0060 Nicotiana tabacum HOM05D006625 ORTHO05D008060 1.8e-93 346.7 276 61.6
Glyma.10G155500 Glycine max HOM05D006625 ORTHO05D008060 4.1e-93 345.5 254 63.8
Hund07059 Selenicereus undatus HOM05D006625 ORTHO05D008060 4.1e-93 345.5 274 59.1
Psat6g149480 Pisum sativum HOM05D006625 ORTHO05D008060 1.5e-92 343.6 253 63.6
Gorai.007G001300 Gossypium raimondii HOM05D006625 ORTHO05D008060 1.0e-91 340.9 268 59.0
Gohir.D11G000400 Gossypium hirsutum HOM05D006625 ORTHO05D008060 3.8e-91 339.0 268 59.0
Ca_10103_v3 Cicer arietinum L. HOM05D006625 ORTHO05D008060 5.0e-91 338.6 299 55.2
Peaxi162Scf00037g00234 Petunia axillaris HOM05D006625 ORTHO05D008060 6.5e-91 338.2 277 60.6
Sc16g0008430 Simmondsia chinensis HOM05D006625 ORTHO05D008060 8.5e-91 337.8 264 59.1
Nn4g26222 Nelumbo nucifera HOM05D006625 ORTHO05D008060 7.2e-90 334.7 271 59.0
THA.LOC104821879 Tarenaya hassleriana HOM05D006625 ORTHO05D008060 7.2e-90 334.7 252 60.3
TWI56G0867 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 7.2e-90 334.7 270 59.6
Rhsim05G0143100 Rhododendron simsii HOM05D006625 ORTHO05D008060 2.7e-89 332.8 234 67.9
Aa31LG5G15780 Aethionema arabicum HOM05D006625 ORTHO05D008060 2.3e-88 329.7 273 56.4
VMungo0720G0027 Vigna mungo HOM05D006625 ORTHO05D008060 2.3e-88 329.7 278 58.3
Haze_04209 Corylus avellana HOM05D006625 ORTHO05D008060 3.9e-88 328.9 237 67.1
Medtr1g082740 Medicago truncatula HOM05D006625 ORTHO05D008060 5.1e-88 328.6 267 59.9
TPR.G6108 Trifolium pratense HOM05D006625 ORTHO05D008060 1.1e-87 327.4 254 61.4
MSTRG.28006 Avicennia marina HOM05D006625 ORTHO05D008060 2.6e-87 326.2 258 60.1
Eucgr.H04479 Eucalyptus grandis HOM05D006625 ORTHO05D008060 1.1e-85 320.9 256 58.6
AL3G15690 Arabidopsis lyrata HOM05D006625 ORTHO05D008060 2.4e-85 319.7 258 57.8
Thhalv10021312m.g Eutrema salsugineum HOM05D006625 ORTHO05D008060 2.4e-85 319.7 272 55.1
Lsat_1_v5_gn_2_64300 Lactuca sativa HOM05D006625 ORTHO05D008060 3.1e-85 319.3 252 60.7
DCAR_029427 Daucus carota HOM05D006625 ORTHO05D008060 5.3e-85 318.5 258 59.7
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 7.0e-85 318.2 255 64.3
PSO339G1258 Papaver somniferum HOM05D006625 ORTHO05D008060 9.1e-85 317.8 273 55.7
SalBow3G1529 Salvia bowleyana HOM05D006857 ORTHO05D008679 1.2e-84 317.4 259 56.0
Phvul.007G181000 Phaseolus vulgaris HOM05D006625 ORTHO05D008060 2.0e-84 316.6 254 58.7
HanXRQChr10g0295051 Helianthus annuus HOM05D006625 ORTHO05D008060 3.5e-84 315.8 269 56.1
Sed0016985 Sechium edule HOM05D006625 ORTHO05D008060 4.5e-84 315.5 270 55.9
BraA05t23018Z Brassica rapa HOM05D006625 ORTHO05D008060 1.0e-83 314.3 269 53.9
Carub.0003s0450 Capsella rubella HOM05D006625 ORTHO05D008060 1.3e-83 313.9 266 54.5
A05p42330 Brassica napus HOM05D006625 ORTHO05D008060 2.2e-83 313.2 269 53.5
Aqoxy2G03295 Aquilegia oxysepala HOM05D006625 ORTHO05D008060 2.9e-83 312.8 251 57.0
ECA238G3785 Erigeron canadensis HOM05D006625 ORTHO05D008060 2.9e-83 312.8 252 59.1
PGR031G0551 Punica granatum HOM05D006625 ORTHO05D008060 6.5e-83 311.6 260 56.9
C05p61940 Brassica napus HOM05D006625 ORTHO05D008060 8.5e-83 311.2 264 54.9
SGA_v2.0_scaffold81G26083 Striga asiatica HOM05D006625 ORTHO05D008060 2.5e-82 309.7 260 59.2
BolC5t34854H Brassica oleracea HOM05D006625 ORTHO05D008060 5.5e-82 308.5 264 54.5
BcaC05g30013 Brassica carinata HOM05D006625 ORTHO05D008060 1.2e-81 307.4 270 53.7
Migut.N01952 Erythranthe guttata HOM05D006625 ORTHO05D008060 2.7e-81 306.2 252 57.9
Sp3g04100 Schrenkiella parvula HOM05D006625 ORTHO05D008060 1.0e-80 304.3 268 54.5
Lj5A9T24 Lonicera japonica HOM05D006625 ORTHO05D008060 8.8e-80 301.2 242 63.2
Lj5A588T21 Lonicera japonica HOM05D006625 ORTHO05D008060 4.4e-79 298.9 241 62.2
EL10Ac4g09338 Beta vulgaris HOM05D006625 ORTHO05D008060 7.5e-79 298.1 257 54.5
BcaC05g30142 Brassica carinata HOM05D006625 ORTHO05D008060 9.7e-79 297.7 271 52.8
Lj5A588T22 Lonicera japonica HOM05D006625 ORTHO05D008060 1.7e-78 297.0 241 62.2
Oeu043355.5 Olea europaea HOM05D006625 ORTHO05D008060 2.8e-78 296.2 234 62.0
Gohir.A11G000800 Gossypium hirsutum HOM05D006625 ORTHO05D008060 1.8e-77 293.5 233 59.7
Lj5A576T32 Lonicera japonica HOM05D006625 ORTHO05D008060 2.4e-77 293.1 241 62.2
TWI77G0294 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 2.7e-76 289.7 220 63.2
Lj5A11T18 Lonicera japonica HOM05D006625 ORTHO05D008060 2.9e-75 286.2 236 62.3
ATR0626G410 Amborella trichopoda HOM05D006625 ORTHO05D008060 1.2e-73 280.8 257 54.5
Rhsim05G0144100 Rhododendron simsii HOM05D006625 ORTHO05D008060 8.0e-73 278.1 258 54.7
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 3.0e-72 276.2 240 57.9
PSO801G0350 Papaver somniferum HOM05D000048 ORTHO05D000207 8.3e-70 268.1 230 54.3
CDE11G1261 Ceratophyllum demersum HOM05D006625 ORTHO05D008060 1.3e-67 260.8 214 56.1
MELO3C004279.2 Cucumis melo HOM05D006625 ORTHO05D008060 4.4e-63 245.7 175 63.4
QL03p006436 Quercus lobata HOM05D006625 ORTHO05D008060 7.5e-63 245.0 152 70.4
Zm00001eb212380 Zea mays HOM05D006625 ORTHO05D008060 6.6e-59 231.9 253 46.2
AT3G05250 Arabidopsis thaliana HOM05D006625 ORTHO05D008060 2.1e-57 226.9 208 54.8
CARHR079590 Cardamine hirsuta HOM05D006625 ORTHO05D008060 1.4e-53 214.2 210 50.0
AUR62005130 Chenopodium quinoa HOM05D006625 ORTHO05D008060 5.4e-53 212.2 175 60.0
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 4.6e-52 209.1 246 43.1
COL.COLO4_10909 Corchorus olitorius HOM05D006625 ORTHO05D008060 2.6e-47 193.4 249 42.6
MBI19_g05826_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 7.0e-45 185.3 203 48.3
MD12G1221000 Malus domestica HOM05D006625 ORTHO05D008060 4.3e-42 176.0 135 64.4
AUR62000843 Chenopodium quinoa HOM05D006625 ORTHO05D008060 6.2e-41 172.2 246 41.9
SEGI_37357 Sequoiadendron giganteum HOM05D006625 ORTHO05D008060 8.9e-40 168.3 197 41.6
Lj5A1T18 Lonicera japonica HOM05D006625 ORTHO05D008060 2.0e-39 167.2 242 43.4
Lj5A1T20 Lonicera japonica HOM05D006625 ORTHO05D008060 2.0e-39 167.2 242 44.6
Mapoly0224s0007 Marchantia polymorpha HOM05D006625 ORTHO05D008060 9.2e-37 158.3 218 39.0
AagrBONN_evm.TU.Sc2ySwM_362.2578 Anthoceros agrestis HOM05D006625 ORTHO05D008060 3.9e-35 152.9 244 34.4
Atru.chr2.446 Acer truncatum HOM05D000091 ORTHO05D009985 2.3e-32 143.7 85 71.8
BolC3t17028H Brassica oleracea HOM05D006625 ORTHO05D008060 2.0e-31 140.6 221 38.0
Lj5A11T17 Lonicera japonica HOM05D006625 ORTHO05D008060 1.3e-30 137.9 131 60.3
FAN05G4155 Fragaria x ananassa HOM05D001310 ORTHO05D001283 2.9e-30 136.7 119 62.2
Pp3c3_27350 Physcomitrium patens HOM05D006625 ORTHO05D008060 5.4e-29 132.5 240 32.9
Os03g0809800 Oryza sativa ssp. japonica HOM05D006625 ORTHO05D008060 3.5e-28 129.8 173 41.6
Hma1.2p1_0617F.1_g190240 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 1.6e-25 120.9 107 62.6
Lj5A10T21 Lonicera japonica HOM05D006625 ORTHO05D008060 5.2e-24 115.9 110 59.1
Lj5A18T33 Lonicera japonica HOM05D006625 ORTHO05D008060 9.9e-23 111.7 108 57.4
MBI19_g05827_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 2.3e-19 100.5 99 54.5
MD12G1221200 Malus domestica HOM05D006625 ORTHO05D008060 2.9e-14 83.6 77 57.1
HPP92_025561 Vanilla planifolia HOM05D006625 ORTHO05D008060 4.2e-13 79.7 70 58.6
Cre03.g200651 Chlamydomonas reinhardtii HOM05D006625 ORTHO05D008060 1.1e-10 71.6 301 22.6
CBR_g7977 Chara braunii HOM05D006625 ORTHO05D008060 1.3e-09 68.2 107 34.6
RcHm_v2.0_Chr4g0421471 Rosa chinensis HOM05D007775 ORTHO05D009858 9.0e-08 62.0 258 26.0
Lsat_1_v5_gn_5_52881 Lactuca sativa HOM05D007775 ORTHO05D009858 4.5e-07 59.7 289 20.8
PGR031G0649 Punica granatum HOM05D007775 ORTHO05D009858 5.8e-07 59.3 274 23.7
CSS0021359 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 9.9e-07 58.5 91 44.0
Peaxi162Scf00033g01324 Petunia axillaris HOM05D007775 ORTHO05D009858 1.3e-06 58.2 243 25.5
FAN07G2931 Fragaria x ananassa HOM05D007775 ORTHO05D009858 2.2e-06 57.4 265 22.6
Prupe.1G140100 Prunus persica HOM05D007775 ORTHO05D009858 2.2e-06 57.4 270 24.8
MD13G1171700 Malus domestica HOM05D007775 ORTHO05D009858 3.8e-06 56.6 93 36.6


User provided reference genes

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