Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g33790 Fragaria vesca HOM05D006369 ORTHO05D007764 5.3e-128 461.1 241 100.0
FAN01G2653 Fragaria x ananassa HOM05D006369 ORTHO05D007764 2.2e-126 455.7 241 99.2
FAN10G1961 Fragaria x ananassa HOM05D006369 ORTHO05D007764 4.0e-123 444.9 241 96.7
FAN10G2535 Fragaria x ananassa HOM05D006369 ORTHO05D007764 4.0e-123 444.9 241 96.7
FAN03G1142 Fragaria x ananassa HOM05D006369 ORTHO05D007764 1.4e-120 436.4 241 95.0
FAN03G2967 Fragaria x ananassa HOM05D006369 ORTHO05D007764 1.4e-120 436.4 241 95.0
RcHm_v2.0_Chr1g0383921 Rosa chinensis HOM05D006369 ORTHO05D007764 1.3e-105 386.7 245 87.3
Prupe.2G324400 Prunus persica HOM05D006369 ORTHO05D007764 1.1e-91 340.5 238 76.1
MD07G1306400 Malus domestica HOM05D006369 ORTHO05D007764 2.4e-88 329.3 239 74.5
MD01G1234200 Malus domestica HOM05D006369 ORTHO05D007764 1.9e-85 319.7 240 75.0
Dinv29169 Davidia involucrata HOM05D006369 ORTHO05D007764 2.3e-78 296.2 237 67.9
CiPaw.05G237500 Carya illinoinensis HOM05D006369 ORTHO05D007764 9.6e-77 290.8 236 66.1
Manes.08G163800 Manihot esculenta HOM05D006369 ORTHO05D007764 5.2e-75 285.0 231 70.1
Ciclev10021854m.g Citrus clementina HOM05D006369 ORTHO05D007764 1.2e-74 283.9 204 74.5
CiPaw.06G019700 Carya illinoinensis HOM05D006369 ORTHO05D007764 3.2e-72 275.8 244 63.5
Cfa015892 Carpinus fangiana HOM05D006369 ORTHO05D007764 2.7e-71 272.7 241 67.6
Atru.chr7.1119 Acer truncatum HOM05D006369 ORTHO05D007764 1.7e-70 270.0 236 65.7
Potri.019G052400 Populus trichocarpa HOM05D006369 ORTHO05D007764 1.1e-69 267.3 247 63.6
CANSAT21G0373 Cannabis sativa HOM05D006369 ORTHO05D007764 1.5e-69 266.9 222 67.6
TAR365G0740 Trochodendron aralioides HOM05D006369 ORTHO05D007764 1.6e-68 263.5 229 62.0
Phvul.011G021200 Phaseolus vulgaris HOM05D006369 ORTHO05D007764 2.1e-68 263.1 240 62.1
Thecc.03G000800 Theobroma cacao HOM05D006369 ORTHO05D007764 4.8e-68 261.9 230 63.9
MELO3C024871.2 Cucumis melo HOM05D006369 ORTHO05D007764 8.1e-68 261.2 245 62.4
Ca_04928_v3 Cicer arietinum L. HOM05D006369 ORTHO05D007764 4.0e-67 258.8 240 60.8
ClCG10G009050 Citrullus lanatus HOM05D006369 ORTHO05D007764 5.3e-67 258.5 243 63.0
Glyma.12G018800 Glycine max HOM05D006369 ORTHO05D007764 3.4e-66 255.8 242 61.2
CsaV3_4G008720 Cucumis sativus L. HOM05D006369 ORTHO05D007764 1.7e-65 253.4 245 60.8
GSVIVG01024423001 Vitis vinifera HOM05D006369 ORTHO05D007764 1.7e-65 253.4 210 67.1
Lalb_Chr19g0139881 Lupinus albus HOM05D006369 ORTHO05D007764 8.4e-65 251.1 219 63.9
Duzib211G0044 Durio zibethinus HOM05D006369 ORTHO05D007764 1.4e-64 250.4 223 64.1
Actinidia00694 Actinidia chinensis HOM05D006369 ORTHO05D007764 7.1e-64 248.1 243 58.4
Lj1A1033G61 Lonicera japonica HOM05D006369 ORTHO05D007764 7.1e-64 248.1 237 63.3
Cc02_g00390 Coffea canephora HOM05D006369 ORTHO05D007764 1.6e-63 246.9 238 58.4
Gohir.A07G176900 Gossypium hirsutum HOM05D006369 ORTHO05D007764 1.6e-63 246.9 210 64.8
Hund18049 Selenicereus undatus HOM05D006369 ORTHO05D007764 2.7e-63 246.1 249 57.4
Sed0025457 Sechium edule HOM05D006369 ORTHO05D007764 2.3e-62 243.0 248 58.9
Psat7g171520 Pisum sativum HOM05D006369 ORTHO05D007764 3.9e-62 242.3 244 58.2
VMungo1127G0993 Vigna mungo HOM05D006369 ORTHO05D007764 3.9e-62 242.3 239 59.4
Glyma.11G092500 Glycine max HOM05D006369 ORTHO05D007764 5.1e-62 241.9 247 59.9
CSS0035893 Camellia sinensis var. sinensis HOM05D006369 ORTHO05D007764 8.7e-62 241.1 259 56.4
Gohir.D07G184401 Gossypium hirsutum HOM05D006369 ORTHO05D007764 3.3e-61 239.2 233 60.1
Gorai.001G204600 Gossypium raimondii HOM05D006369 ORTHO05D007764 3.3e-61 239.2 233 60.1
arahy.Tifrunner.gnm1.ann1.WFP97B Arachis hypogaea HOM05D006369 ORTHO05D007764 1.6e-60 236.9 271 53.5
Nn3g21321 Nelumbo nucifera HOM05D006369 ORTHO05D007764 2.1e-60 236.5 236 56.8
Haze_00598 Corylus avellana HOM05D006369 ORTHO05D007764 1.8e-59 233.4 183 72.7
THA.LOC104820876 Tarenaya hassleriana HOM05D006369 ORTHO05D007764 2.4e-59 233.0 237 59.9
Nitab4.5_0000820g0010 Nicotiana tabacum HOM05D006369 ORTHO05D007764 4.0e-59 232.3 207 60.4
Aqoxy2G03109 Aquilegia oxysepala HOM05D006369 ORTHO05D007764 6.9e-59 231.5 216 57.4
Medtr4g077610 Medicago truncatula HOM05D006369 ORTHO05D007764 1.2e-58 230.7 218 60.1
MSTRG.8579 Avicennia marina HOM05D006369 ORTHO05D007764 1.5e-58 230.3 228 57.0
Nitab4.5_0000001g0150 Nicotiana tabacum HOM05D006369 ORTHO05D007764 3.4e-58 229.2 206 60.7
arahy.Tifrunner.gnm1.ann1.F9R2PF Arachis hypogaea HOM05D006369 ORTHO05D007764 4.5e-58 228.8 286 51.0
TPR.G39567 Trifolium pratense HOM05D006369 ORTHO05D007764 5.8e-58 228.4 251 55.0
Ah.08g212670 Amaranthus hybridus HOM05D006369 ORTHO05D007764 9.9e-58 227.6 248 54.0
vmacro02505 Vaccinium macrocarpon HOM05D006369 ORTHO05D007764 6.4e-57 224.9 282 52.1
Migut.F00102 Erythranthe guttata HOM05D006369 ORTHO05D007764 1.1e-56 224.2 242 53.3
EL10Ac7g17391 Beta vulgaris HOM05D006369 ORTHO05D007764 3.2e-56 222.6 255 52.9
C02p08760 Brassica napus HOM05D006369 ORTHO05D007764 1.2e-55 220.7 242 52.9
Thhalv10014449m.g Eutrema salsugineum HOM05D006369 ORTHO05D007764 1.2e-55 220.7 230 53.0
Lj3g0017971 Lotus japonicus HOM05D006369 ORTHO05D007764 1.6e-55 220.3 271 51.7
A02p03940 Brassica napus HOM05D006369 ORTHO05D007764 2.7e-55 219.5 224 55.8
BcaC03g18532 Brassica carinata HOM05D006369 ORTHO05D007764 4.6e-55 218.8 244 52.0
BolC2t06790H Brassica oleracea HOM05D006369 ORTHO05D007764 4.6e-55 218.8 244 52.0
CARHR196110 Cardamine hirsuta HOM05D006369 ORTHO05D007764 6.0e-55 218.4 234 53.8
BraA02t05358Z Brassica rapa HOM05D006369 ORTHO05D007764 2.3e-54 216.5 225 55.6
CAN.G317.12 Capsicum annuum HOM05D006369 ORTHO05D007764 3.0e-54 216.1 199 57.3
BcaNung00427 Brassica carinata HOM05D006369 ORTHO05D007764 5.1e-54 215.3 247 53.4
Sp6g27090 Schrenkiella parvula HOM05D006369 ORTHO05D007764 5.1e-54 215.3 232 52.6
Carub.0006s1525 Capsella rubella HOM05D006369 ORTHO05D007764 2.5e-53 213.0 229 55.5
MBI06_g08525_MAGBIO Magnolia biondii HOM05D006369 ORTHO05D007764 2.1e-52 209.9 208 55.3
Aa31LG11G12610 Aethionema arabicum HOM05D006369 ORTHO05D007764 3.7e-52 209.1 243 53.9
AL6G28090 Arabidopsis lyrata HOM05D006369 ORTHO05D007764 4.8e-52 208.8 193 60.1
Solyc03g062680.3 Solanum lycopersicum HOM05D006369 ORTHO05D007764 8.1e-52 208.0 204 58.3
HanXRQChr17g0541681 Helianthus annuus HOM05D006369 ORTHO05D007764 2.4e-51 206.5 238 52.9
PGR042G2784 Punica granatum HOM05D006369 ORTHO05D007764 3.1e-51 206.1 222 54.1
AT5G17070 Arabidopsis thaliana HOM05D006369 ORTHO05D007764 4.0e-51 205.7 225 52.4
Sopen03g015000 Solanum pennellii HOM05D006369 ORTHO05D007764 4.0e-51 205.7 204 57.8
Lsat_1_v5_gn_3_37940 Lactuca sativa HOM05D006369 ORTHO05D007764 5.8e-50 201.8 221 54.8
BcaB01g04960 Brassica carinata HOM05D006369 ORTHO05D007764 7.6e-50 201.4 250 51.6
Sc05g0004440 Simmondsia chinensis HOM05D006369 ORTHO05D007764 1.0e-49 201.1 197 57.4
SGA_v2.0_scaffold18G08505 Striga asiatica HOM05D006369 ORTHO05D007764 2.2e-49 199.9 250 49.6
Peaxi162Scf00076g00928 Petunia axillaris HOM05D006369 ORTHO05D007764 4.9e-49 198.7 290 43.1
Eucgr.A02962 Eucalyptus grandis HOM05D006369 ORTHO05D007764 8.4e-49 198.0 193 54.4
SalBow4G3280 Salvia bowleyana HOM05D006369 ORTHO05D007764 4.2e-48 195.7 228 47.8
Oeu005324.1 Olea europaea HOM05D006369 ORTHO05D007764 1.2e-47 194.1 167 61.1
Psat1g047200 Pisum sativum HOM05D006369 ORTHO05D007764 2.1e-47 193.4 151 64.9
DCAR_020401 Daucus carota HOM05D006369 ORTHO05D007764 3.0e-46 189.5 234 48.7
ECA246G2850 Erigeron canadensis HOM05D006369 ORTHO05D007764 2.5e-45 186.4 228 49.6
Psat1g047280 Pisum sativum HOM05D006369 ORTHO05D007764 7.4e-45 184.9 131 70.2
PSO210G6912 Papaver somniferum HOM05D006369 ORTHO05D007764 2.4e-43 179.9 224 50.0
PSO170G0520 Papaver somniferum HOM05D006369 ORTHO05D007764 5.3e-43 178.7 224 49.6
Psat1g047240 Pisum sativum HOM05D006369 ORTHO05D007764 2.6e-42 176.4 172 55.8
Rhsim13G0016700 Rhododendron simsii HOM05D006369 ORTHO05D007764 2.6e-42 176.4 279 43.7
CDE02G3455 Ceratophyllum demersum HOM05D006369 ORTHO05D007764 1.1e-37 161.0 240 44.2
HPP92_026820 Vanilla planifolia HOM05D006369 ORTHO05D007764 1.9e-37 160.2 218 47.7
Os06g0300700 Oryza sativa ssp. japonica HOM05D006369 ORTHO05D007764 6.3e-36 155.2 223 43.5
SEGI_01011 Sequoiadendron giganteum HOM05D006369 ORTHO05D007764 1.8e-35 153.7 176 52.3
BraA03t10137Z Brassica rapa HOM05D006369 ORTHO05D007764 1.2e-34 151.0 168 51.2
Zm00001eb381130 Zea mays HOM05D006369 ORTHO05D007764 7.7e-34 148.3 219 43.8
ATR0213G006 Amborella trichopoda HOM05D006369 ORTHO05D007764 2.9e-33 146.4 154 54.5
unitig_747.g21708 Utricularia gibba HOM05D006369 ORTHO05D007764 3.8e-33 146.0 262 38.2
COL.COLO4_13442 Corchorus olitorius HOM05D006369 ORTHO05D007764 1.1e-29 134.4 190 45.8
Mapoly0084s0069 Marchantia polymorpha HOM05D006369 ORTHO05D007764 3.4e-26 122.9 216 41.2
RcHm_v2.0_Chr5g0041771 Rosa chinensis HOM05D006369 ORTHO05D007764 7.7e-26 121.7 74 82.4
CBR_g17900 Chara braunii HOM05D006369 ORTHO05D007764 3.8e-25 119.4 135 48.9
Pp3c20_5600 Physcomitrium patens HOM05D006369 ORTHO05D007764 3.8e-25 119.4 216 39.4
AagrBONN_evm.TU.Sc2ySwM_344.1770 Anthoceros agrestis HOM05D006369 ORTHO05D007764 8.5e-25 118.2 153 43.8
Hma1.2p1_1235F.1_g269100 Hydrangea macrophylla HOM05D006369 ORTHO05D007764 1.4e-24 117.5 145 52.4
Dinv06133 Davidia involucrata HOM05D006369 ORTHO05D007764 1.6e-23 114.0 95 63.2
Sabra19G0056300 Salix brachista HOM05D006369 ORTHO05D007764 5.3e-19 99.0 94 64.9
SMO141G0301 Selaginella moellendorffii HOM05D006369 ORTHO05D007764 1.7e-17 94.0 152 38.8
C03p09390 Brassica napus HOM05D006369 ORTHO05D007764 7.2e-16 88.6 132 47.7
BcaB01g05232 Brassica carinata HOM05D006369 ORTHO05D007764 6.1e-15 85.5 112 51.8
Cpa.g.sc39.77 Carica papaya HOM05D006369 ORTHO05D007764 8.8e-14 81.6 50 72.0
Cre10.g463700 Chlamydomonas reinhardtii HOM05D006369 ORTHO05D007764 3.3e-13 79.7 137 39.4
BolC3t13440H Brassica oleracea HOM05D006369 ORTHO05D007764 5.7e-13 79.0 119 47.9
Sabra19G0056200 Salix brachista HOM05D006369 ORTHO05D007764 3.7e-12 76.3 44 86.4
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 1.8e-11 73.9 87 44.8
Sabra19G0056100 Salix brachista HOM05D006369 ORTHO05D007764 1.0e-09 68.2 81 50.6
PGSC0003DMG402008641 Solanum tuberosum HOM05D006369 ORTHO05D007764 2.9e-09 66.6 42 64.3
QL10p024490 Quercus lobata HOM05D006369 ORTHO05D007764 8.0e-07 58.5 51 64.7
PGSC0003DMG401008641 Solanum tuberosum HOM05D006369 ORTHO05D007764 8.0e-07 58.5 93 44.1
A03p08120 Brassica napus HOM05D006369 ORTHO05D007764 2.3e-06 57.0 156 34.0


User provided reference genes

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