Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 2.4e-60 235.3 122 100.0
FAN26G1611 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.3e-29 133.3 123 65.0
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.2e-29 132.5 84 79.8
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.1e-28 130.2 84 78.6
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 2.4e-28 129.0 87 74.7
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.7e-27 125.6 87 72.4
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 1.6e-24 116.3 86 66.3
FAN17G0281 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.3e-18 95.9 98 58.2
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 1.8e-15 86.3 77 58.4
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 3.1e-15 85.5 78 55.1
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 2.6e-14 82.4 79 53.2
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 1.2e-11 73.6 86 51.2
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 4.6e-11 71.6 82 50.0
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 6.0e-11 71.2 85 48.2
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 7.9e-11 70.9 85 48.2
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 1.3e-10 70.1 79 50.6
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 1.8e-10 69.7 86 44.2
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 2.3e-10 69.3 81 49.4
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 3.0e-10 68.9 80 47.5
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 5.1e-10 68.2 80 46.2
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 6.7e-10 67.8 84 44.0
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 6.7e-10 67.8 80 46.2
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 8.7e-10 67.4 72 48.6
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 8.7e-10 67.4 78 46.2
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 1.1e-09 67.0 79 48.1
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.5e-09 66.6 83 45.8
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 1.5e-09 66.6 79 43.0
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.5e-09 66.6 71 46.5
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 1.9e-09 66.2 83 47.0
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 1.9e-09 66.2 72 48.6
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 2.5e-09 65.9 118 36.4
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 5.6e-09 64.7 82 46.3
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 5.6e-09 64.7 79 45.6
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 5.6e-09 64.7 81 46.9
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 7.4e-09 64.3 80 45.0
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 7.4e-09 64.3 81 45.7
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 9.6e-09 63.9 80 40.0
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 9.6e-09 63.9 80 41.2
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 9.6e-09 63.9 71 47.9
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 9.6e-09 63.9 76 44.7
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 9.6e-09 63.9 71 47.9
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 9.6e-09 63.9 71 47.9
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 1.6e-08 63.2 72 47.2
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 1.6e-08 63.2 85 45.9
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 2.1e-08 62.8 80 46.2
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 2.1e-08 62.8 71 46.5
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 2.1e-08 62.8 86 40.7
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 2.1e-08 62.8 79 44.3
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 2.8e-08 62.4 77 46.8
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 2.8e-08 62.4 74 47.3
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 3.7e-08 62.0 82 42.7
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 3.7e-08 62.0 85 47.1
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 3.7e-08 62.0 79 50.6
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.7e-08 62.0 80 42.5
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.7e-08 62.0 123 36.6
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 4.8e-08 61.6 82 47.6
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 4.8e-08 61.6 70 50.0
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 4.8e-08 61.6 72 45.8
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 6.2e-08 61.2 79 41.8
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 6.2e-08 61.2 71 46.5
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 6.2e-08 61.2 79 44.3
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 8.1e-08 60.8 82 46.3
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 8.1e-08 60.8 82 46.3
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 8.1e-08 60.8 88 40.9
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 1.1e-07 60.5 70 44.3
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.1e-07 60.5 85 41.2
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 1.1e-07 60.5 70 52.9
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.1e-07 60.5 70 48.6
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 1.4e-07 60.1 73 49.3
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.8e-07 59.7 71 46.5
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.8e-07 59.7 82 47.6
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.8e-07 59.7 82 47.6
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 1.8e-07 59.7 79 43.0
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 1.8e-07 59.7 79 43.0
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 2.4e-07 59.3 76 43.4
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 2.4e-07 59.3 71 49.3
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 3.1e-07 58.9 75 44.0
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 3.1e-07 58.9 79 43.0
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 3.1e-07 58.9 79 40.5
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 4.0e-07 58.5 71 43.7
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 4.0e-07 58.5 71 42.3
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 4.0e-07 58.5 72 47.2
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 5.3e-07 58.2 71 42.3
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.3e-07 58.2 79 45.6
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 6.9e-07 57.8 82 46.3
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 6.9e-07 57.8 82 46.3
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 6.9e-07 57.8 79 41.8
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 6.9e-07 57.8 73 47.9
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 6.9e-07 57.8 78 46.2
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 9.0e-07 57.4 80 43.8
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 9.0e-07 57.4 70 48.6
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 9.0e-07 57.4 70 42.9
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.2e-06 57.0 71 42.3
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 1.2e-06 57.0 71 40.8
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 1.2e-06 57.0 71 40.8
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.2e-06 57.0 71 43.7
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.2e-06 57.0 83 39.8
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 1.2e-06 57.0 68 44.1
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 1.5e-06 56.6 70 47.1
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 1.5e-06 56.6 71 40.8
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 1.5e-06 56.6 70 47.1
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.5e-06 56.6 69 46.4
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.5e-06 56.6 88 40.9
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 2.0e-06 56.2 70 42.9
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 2.0e-06 56.2 72 47.2
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 2.0e-06 56.2 74 44.6
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 2.6e-06 55.8 70 45.7
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 2.6e-06 55.8 70 45.7
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 2.6e-06 55.8 70 45.7
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.6e-06 55.8 82 46.3
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 2.6e-06 55.8 71 43.7
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 3.4e-06 55.5 79 41.8
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.4e-06 55.5 75 44.0
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 3.4e-06 55.5 77 40.3
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 3.4e-06 55.5 70 48.6
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.4e-06 55.5 92 39.1
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 4.5e-06 55.1 70 44.3
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 4.5e-06 55.1 70 40.0
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 4.5e-06 55.1 70 42.9
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 4.5e-06 55.1 84 38.1
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 4.5e-06 55.1 70 42.9
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 4.5e-06 55.1 76 40.8
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 5.8e-06 54.7 67 40.3
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 7.6e-06 54.3 71 45.1
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 7.6e-06 54.3 64 46.9
FAN09G4337 Fragaria x ananassa HOM05D003940 ORTHO05D208397 7.6e-06 54.3 42 69.0
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 7.6e-06 54.3 73 45.2
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 7.6e-06 54.3 77 39.0
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 1.0e-05 53.9 72 38.9
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 1.0e-05 53.9 72 38.9
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 1.0e-05 53.9 70 41.4


User provided reference genes

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