Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 5.1e-268 927.2 463 100.0
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.1e-265 917.9 463 98.9
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.1e-265 917.9 463 98.9
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 6.4e-263 910.2 460 98.5
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.1e-262 909.4 463 97.6
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.1e-262 909.4 463 97.6
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 7.8e-261 903.3 463 97.8
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 1.6e-242 842.4 459 91.5
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 1.8e-220 769.2 461 83.3
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 4.5e-216 754.6 455 82.4
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 2.9e-215 751.9 461 81.3
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 3.3e-211 738.4 455 80.9
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 4.1e-209 731.5 452 80.5
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 6.9e-209 730.7 460 78.7
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 3.4e-208 728.4 454 78.4
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 2.2e-207 725.7 458 77.1
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 3.8e-207 724.9 450 78.7
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 5.0e-207 724.5 450 78.0
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 5.0e-207 724.5 450 78.2
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 3.2e-206 721.8 450 77.8
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 4.2e-206 721.5 460 75.7
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 5.5e-206 721.1 450 78.0
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 7.2e-206 720.7 453 78.1
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 1.2e-205 719.9 450 77.1
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 1.6e-205 719.5 434 80.0
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 2.1e-205 719.2 454 77.8
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 2.7e-205 718.8 454 77.5
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 6.1e-205 717.6 450 78.4
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 7.9e-205 717.2 457 77.2
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 1.8e-204 716.1 448 78.6
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 2.3e-204 715.7 445 79.1
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 6.7e-204 714.1 463 76.0
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 8.8e-204 713.8 451 76.5
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.1e-203 713.4 452 76.8
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 2.0e-203 712.6 458 75.8
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 2.6e-203 712.2 439 79.3
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 7.4e-203 710.7 459 75.8
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 2.2e-202 709.1 455 76.9
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 2.2e-202 709.1 459 76.7
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 2.8e-202 708.8 439 79.0
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 3.7e-202 708.4 462 76.2
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 3.7e-202 708.4 450 76.9
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 8.2e-202 707.2 451 76.7
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 8.2e-202 707.2 450 76.0
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 2.4e-201 705.7 459 76.3
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 3.1e-201 705.3 452 75.0
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 3.1e-201 705.3 450 77.1
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 7.0e-201 704.1 460 75.2
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 9.1e-201 703.7 432 79.2
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 9.1e-201 703.7 457 73.5
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.2e-200 703.4 454 76.7
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 2.0e-200 702.6 431 79.4
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 2.6e-200 702.2 445 77.5
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 2.6e-200 702.2 428 79.0
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 5.9e-200 701.0 452 75.4
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 1.0e-199 700.3 443 77.0
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 1.3e-199 699.9 448 77.0
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 2.9e-199 698.7 457 75.5
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 2.9e-199 698.7 445 76.4
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 3.8e-199 698.4 448 76.8
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 3.8e-199 698.4 433 76.9
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 8.5e-199 697.2 425 77.9
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 2.5e-198 695.7 455 74.3
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 3.2e-198 695.3 447 75.4
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 3.2e-198 695.3 483 71.6
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 1.2e-197 693.3 442 76.5
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 1.6e-197 693.0 459 74.9
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 2.1e-197 692.6 463 75.2
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 3.6e-197 691.8 442 76.0
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 3.6e-197 691.8 450 75.6
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 3.6e-197 691.8 450 75.6
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 4.7e-197 691.4 442 75.8
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 6.1e-197 691.0 446 74.0
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 6.1e-197 691.0 456 75.2
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 8.0e-197 690.6 464 74.6
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 8.0e-197 690.6 442 74.4
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 8.0e-197 690.6 443 76.3
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 1.4e-196 689.9 459 74.9
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.4e-196 689.9 458 74.9
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 1.8e-196 689.5 443 76.5
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 4.0e-196 688.3 453 74.0
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 6.7e-196 687.6 465 74.6
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 8.8e-196 687.2 464 74.8
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 8.8e-196 687.2 439 75.9
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 2.0e-195 686.0 432 76.2
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 2.0e-195 686.0 457 75.9
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 3.3e-195 685.3 452 74.8
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 4.4e-195 684.9 462 74.7
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 4.4e-195 684.9 428 76.9
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 9.7e-195 683.7 426 77.7
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 2.2e-194 682.6 456 74.3
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 2.2e-194 682.6 460 74.6
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 6.3e-194 681.0 462 73.2
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 1.4e-193 679.9 448 75.0
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 7.0e-193 677.6 441 74.8
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 2.6e-192 675.6 444 73.6
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 2.6e-192 675.6 468 70.9
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 3.5e-192 675.2 460 73.3
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 2.9e-191 672.2 427 76.6
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 1.1e-190 670.2 446 73.3
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 1.5e-190 669.8 452 72.6
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 7.2e-190 667.5 443 75.8
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.2e-189 666.8 415 78.3
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 1.2e-189 666.8 445 73.7
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 3.6e-189 665.2 449 73.7
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 8.0e-189 664.1 446 74.4
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 8.0e-189 664.1 464 72.2
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 4.0e-188 661.8 440 71.8
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 6.8e-188 661.0 455 71.4
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 3.4e-187 658.7 401 79.1
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 1.3e-186 656.8 437 71.4
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 2.2e-186 656.0 440 70.9
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 2.2e-186 656.0 440 70.9
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 2.8e-186 655.6 433 72.1
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 6.3e-186 654.4 406 78.3
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 1.1e-185 653.7 436 73.6
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 1.4e-185 653.3 438 71.5
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 1.8e-185 652.9 455 69.5
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 2.4e-185 652.5 445 71.2
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 1.2e-184 650.2 436 73.2
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.6e-184 649.8 458 71.2
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 2.7e-184 649.0 406 77.8
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 7.7e-184 647.5 443 70.4
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 2.9e-183 645.6 434 71.4
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 5.0e-183 644.8 434 71.2
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 6.5e-183 644.4 434 71.2
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 1.1e-182 643.7 429 71.1
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 1.9e-182 642.9 434 71.0
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 3.2e-182 642.1 438 71.7
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.0e-180 637.1 448 68.3
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 3.0e-180 635.6 444 70.0
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 7.5e-179 630.9 449 69.3
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 4.9e-178 628.2 389 78.4
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 8.3e-178 627.5 448 68.5
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 1.2e-176 623.6 385 78.2
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 5.9e-176 621.3 446 70.0
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.7e-175 619.8 364 81.3
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 1.6e-173 613.2 425 67.8
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 3.0e-172 609.0 386 75.9
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 7.5e-171 604.4 384 76.0
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.3e-170 603.6 441 68.7
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 5.9e-168 594.7 380 78.7
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 1.4e-164 583.6 365 77.0
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 6.8e-156 554.7 450 64.2
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 2.1e-144 516.5 440 59.8
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 4.6e-144 515.4 430 61.4
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.6e-141 506.9 438 60.5
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.2e-137 492.7 429 58.7
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.7e-135 486.9 418 57.4
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 7.6e-131 471.5 444 56.5
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 3.5e-120 436.0 306 67.3
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 1.5e-118 430.6 282 74.1
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 1.5e-115 420.6 438 50.0
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 3.9e-111 406.0 236 80.5
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 4.2e-105 386.0 231 80.1
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 1.3e-103 380.9 434 46.1
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 4.1e-100 369.4 272 67.6
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 2.1e-96 357.1 423 46.8
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 9.1e-92 341.7 376 46.5
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 3.1e-76 290.0 279 57.7
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 2.8e-69 266.9 165 78.2
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 1.0e-55 221.9 151 74.2
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.7e-45 188.0 113 77.0
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 8.9e-39 165.6 95 81.1
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 1.5e-38 164.9 432 29.9
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 4.4e-38 163.3 126 62.7
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 1.4e-36 158.3 451 30.4
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 2.8e-24 117.5 84 63.1
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 3.1e-23 114.0 116 56.0
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 6.9e-15 86.3 60 66.7
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 2.9e-13 80.9 79 55.7
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 8.1e-08 62.8 197 25.9
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 8.1e-08 62.8 193 28.5
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 8.1e-08 62.8 199 27.1
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 5.3e-07 60.1 144 28.5
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 6.9e-07 59.7 196 26.5
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 9.0e-07 59.3 144 28.5
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 1.5e-06 58.5 194 23.2
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.0e-06 58.2 107 26.2
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 2.0e-06 58.2 388 23.5
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 2.0e-06 58.2 197 24.9
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 4.5e-06 57.0 197 24.9
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 4.5e-06 57.0 139 28.8
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 7.6e-06 56.2 43 62.8
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 7.6e-06 56.2 163 25.8


User provided reference genes

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