Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g32890 Fragaria vesca HOM05D003457 ORTHO05D009249 3.1e-179 631.7 324 100.0
FAN03G1743 Fragaria x ananassa HOM05D003457 ORTHO05D009746 3.6e-164 581.6 312 96.2
FAN10G0211 Fragaria x ananassa HOM05D003457 ORTHO05D009746 8.4e-161 570.5 312 94.2
FAN01G1561 Fragaria x ananassa HOM05D003457 ORTHO05D009746 6.0e-151 537.7 312 89.4
FAN10G3191 Fragaria x ananassa HOM05D003457 ORTHO05D009746 6.3e-140 501.1 313 85.0
RcHm_v2.0_Chr1g0382841 Rosa chinensis HOM05D003457 ORTHO05D009249 1.1e-123 447.2 345 73.9
MD01G1228100 Malus domestica HOM05D003457 ORTHO05D009249 3.0e-73 279.6 378 48.7
MD07G1298800 Malus domestica HOM05D003457 ORTHO05D009249 7.3e-72 275.0 375 49.9
Prupe.2G318600 Prunus persica HOM05D003457 ORTHO05D009249 1.6e-71 273.9 409 46.9
Cfa016162 Carpinus fangiana HOM05D003457 ORTHO05D009249 8.4e-52 208.4 356 44.1
Gohir.D04G000050 Gossypium hirsutum HOM05D003457 ORTHO05D009249 9.3e-51 204.9 359 40.4
CiPaw.06G041400 Carya illinoinensis HOM05D003457 ORTHO05D009249 1.9e-48 197.2 368 41.0
Duzib205G0475 Durio zibethinus HOM05D003457 ORTHO05D009249 3.6e-47 193.0 361 39.6
Gorai.012G000700 Gossypium raimondii HOM05D003457 ORTHO05D009249 1.8e-46 190.7 361 39.6
Thecc.03G208400 Theobroma cacao HOM05D003457 ORTHO05D009249 7.6e-45 185.3 364 39.3
Duzib084G1096 Durio zibethinus HOM05D003457 ORTHO05D009249 1.2e-42 177.9 370 36.5
Duzib068G0780 Durio zibethinus HOM05D003457 ORTHO05D009249 3.5e-42 176.4 317 41.0
Manes.01G043100 Manihot esculenta HOM05D003457 ORTHO05D009249 1.0e-41 174.9 365 38.9
Actinidia34268 Actinidia chinensis HOM05D003457 ORTHO05D009249 1.5e-40 171.0 343 35.3
Dinv35380 Davidia involucrata HOM05D003457 ORTHO05D009746 1.9e-40 170.6 376 34.3
Dinv29212 Davidia involucrata HOM05D003457 ORTHO05D009249 3.3e-40 169.9 370 35.4
Gohir.D04G000080 Gossypium hirsutum HOM05D003457 ORTHO05D009249 3.3e-40 169.9 341 38.1
ClCG00G005020 Citrullus lanatus HOM05D003457 ORTHO05D009249 4.3e-40 169.5 262 43.1
ClCG01G004590 Citrullus lanatus HOM05D003457 ORTHO05D009249 4.3e-40 169.5 262 43.1
ClCG01G004630 Citrullus lanatus HOM05D003457 ORTHO05D009249 4.3e-40 169.5 262 43.1
TWI23G0841 Tripterygium wilfordii HOM05D003457 ORTHO05D009249 1.3e-39 167.9 350 38.0
Actinidia08697 Actinidia chinensis HOM05D003457 ORTHO05D009249 2.4e-38 163.7 346 35.0
CsaV3_5G004840 Cucumis sativus L. HOM05D003457 ORTHO05D009249 2.4e-38 163.7 260 42.7
MELO3C033815.2 Cucumis melo HOM05D003457 ORTHO05D009249 6.9e-38 162.2 313 36.4
Cpa.g.sc3.155 Carica papaya HOM05D003457 ORTHO05D009249 9.0e-38 161.8 267 44.6
Nitab4.5_0000319g0070 Nicotiana tabacum HOM05D003457 ORTHO05D009249 6.5e-36 155.6 349 35.0
Nn1g00443 Nelumbo nucifera HOM05D003457 ORTHO05D009249 1.1e-35 154.8 381 34.4
CSS0029860 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 1.4e-35 154.5 347 35.7
CSS0022238 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 1.9e-35 154.1 347 35.7
Potri.015G005100 Populus trichocarpa HOM05D003457 ORTHO05D009249 6.0e-34 149.1 363 37.7
Sopen03g022030 Solanum pennellii HOM05D003457 ORTHO05D009249 6.7e-33 145.6 363 32.0
PGR142G1344 Punica granatum HOM05D003457 ORTHO05D009249 8.7e-33 145.2 331 38.4
Ciclev10020653m.g Citrus clementina HOM05D003457 ORTHO05D009249 1.1e-32 144.8 253 38.3
Eucgr.K00429 Eucalyptus grandis HOM05D003457 ORTHO05D009249 2.5e-32 143.7 361 34.6
PGSC0003DMG400000588 Solanum tuberosum HOM05D003457 ORTHO05D009249 3.7e-31 139.8 365 32.1
Solyc03g081310.3 Solanum lycopersicum HOM05D003457 ORTHO05D009249 4.8e-31 139.4 365 31.8
CiPaw.02G048700 Carya illinoinensis HOM05D003457 ORTHO05D009249 8.2e-31 138.7 203 44.8
Rhsim03G0215300 Rhododendron simsii HOM05D003457 ORTHO05D009249 1.1e-30 138.3 249 40.6
THA.LOC104798986 Tarenaya hassleriana HOM05D003457 ORTHO05D009249 3.1e-30 136.7 295 40.3
Sabra15G0003600 Salix brachista HOM05D003457 ORTHO05D009249 4.5e-29 132.9 265 40.4
Aa31LG11G3740 Aethionema arabicum HOM05D003457 ORTHO05D009249 1.3e-28 131.3 271 39.5
MBI12_g09299_MAGBIO Magnolia biondii HOM05D003457 ORTHO05D009249 2.9e-28 130.2 284 34.5
MSTRG.31 Avicennia marina HOM05D003457 ORTHO05D009249 1.9e-27 127.5 336 36.0
Nitab4.5_0005040g0050 Nicotiana tabacum HOM05D003457 ORTHO05D009249 5.5e-27 125.9 319 32.9
Medtr3g092670 Medicago truncatula HOM05D003457 ORTHO05D009249 9.3e-27 125.2 205 38.0
TAR636G2436 Trochodendron aralioides HOM05D003457 ORTHO05D009249 1.6e-26 124.4 268 35.8
Psat5g072040 Pisum sativum HOM05D003457 ORTHO05D009249 2.1e-26 124.0 203 42.9
TPR.G33664 Trifolium pratense HOM05D003457 ORTHO05D009249 2.1e-26 124.0 237 36.7
Migut.F00990 Erythranthe guttata HOM05D003457 ORTHO05D009249 1.3e-25 121.3 334 32.3
COL.COLO4_14368 Corchorus olitorius HOM05D003457 ORTHO05D009249 1.8e-25 120.9 310 31.0
SalBow2G2220 Salvia bowleyana HOM05D003457 ORTHO05D009249 2.3e-25 120.6 341 36.7
TAR629G1045 Trochodendron aralioides HOM05D003457 ORTHO05D009249 2.3e-25 120.6 311 33.4
Aqoxy5G04336 Aquilegia oxysepala HOM05D003457 ORTHO05D009249 3.0e-25 120.2 262 34.0
Potri.012G021300 Populus trichocarpa HOM05D003457 ORTHO05D009249 3.9e-25 119.8 280 38.9
Lj1g0002342 Lotus japonicus HOM05D003457 ORTHO05D009249 1.1e-24 118.2 233 38.6
Peaxi162Scf00300g00833 Petunia axillaris HOM05D003457 ORTHO05D009249 1.5e-24 117.9 338 32.8
HPP92_015415 Vanilla planifolia HOM05D003457 ORTHO05D009249 2.5e-24 117.1 243 35.0
Phvul.009G045300 Phaseolus vulgaris HOM05D003457 ORTHO05D009249 4.3e-24 116.3 215 38.1
AL6G36090 Arabidopsis lyrata HOM05D003457 ORTHO05D009249 5.7e-24 115.9 269 36.4
Ca_16777_v3 Cicer arietinum L. HOM05D003457 ORTHO05D009249 5.7e-24 115.9 212 38.2
Thhalv10005511m.g Eutrema salsugineum HOM05D003457 ORTHO05D009249 9.7e-24 115.2 277 36.1
Oeu037975.2 Olea europaea HOM05D003457 ORTHO05D009249 9.7e-24 115.2 254 35.0
Sabra12G0012300 Salix brachista HOM05D003457 ORTHO05D009249 9.7e-24 115.2 262 38.5
Sp2g22840 Schrenkiella parvula HOM05D003457 ORTHO05D009249 1.3e-23 114.8 296 36.1
Cc02_g00840 Coffea canephora HOM05D003457 ORTHO05D009249 2.2e-23 114.0 359 31.8
Sabra05G0139600 Salix brachista HOM05D003457 ORTHO05D009249 2.2e-23 114.0 243 39.1
CARHR188920 Cardamine hirsuta HOM05D003457 ORTHO05D009249 2.8e-23 113.6 285 35.8
VMungo1309G3135 Vigna mungo HOM05D003457 ORTHO05D009249 6.3e-23 112.5 229 38.4
Glyma.06G136400 Glycine max HOM05D003457 ORTHO05D009249 1.1e-22 111.7 232 38.8
Glyma.04G228600 Glycine max HOM05D003457 ORTHO05D009249 1.8e-22 110.9 255 36.1
AT5G24500 Arabidopsis thaliana HOM05D003457 ORTHO05D009249 2.4e-22 110.5 288 33.0
CAN.G303.15 Capsicum annuum HOM05D003457 ORTHO05D009249 2.4e-22 110.5 231 32.5
QL09p007211 Quercus lobata HOM05D003457 ORTHO05D009249 2.4e-22 110.5 317 32.2
Carub.0006s2232 Capsella rubella HOM05D003457 ORTHO05D009249 4.1e-22 109.8 315 32.4
SGA_v2.0_scaffold141G35555 Striga asiatica HOM05D003457 ORTHO05D009249 1.5e-21 107.8 323 31.6
Lsat_1_v5_gn_9_3980 Lactuca sativa HOM05D003457 ORTHO05D009249 2.0e-21 107.5 247 35.2
ATR1155G002 Amborella trichopoda HOM05D003457 ORTHO05D009249 2.6e-21 107.1 291 30.9
DCAR_020371 Daucus carota HOM05D003457 ORTHO05D009249 2.6e-21 107.1 239 40.6
HanXRQChr08g0225921 Helianthus annuus HOM05D003457 ORTHO05D009249 4.5e-21 106.3 287 32.8
Lsat_1_v5_gn_5_51360 Lactuca sativa HOM05D003457 ORTHO05D009249 4.5e-21 106.3 247 34.8
PSO782G2427 Papaver somniferum HOM05D003457 ORTHO05D009249 5.9e-21 105.9 243 36.2
Lsat_1_v5_gn_1_120581 Lactuca sativa HOM05D003457 ORTHO05D009249 1.0e-20 105.1 247 34.8
EL10Ac3g05182 Beta vulgaris HOM05D003457 ORTHO05D009249 1.7e-20 104.4 354 30.8
Lsat_1_v5_gn_8_4361 Lactuca sativa HOM05D003457 ORTHO05D009249 2.2e-20 104.0 345 31.0
BcaB07g29912 Brassica carinata HOM05D003457 ORTHO05D009249 8.5e-20 102.1 291 31.3
Lsat_1_v5_gn_7_20360 Lactuca sativa HOM05D003457 ORTHO05D009249 2.5e-19 100.5 285 32.3
Ah.07g204690 Amaranthus hybridus HOM05D003457 ORTHO05D009249 4.2e-19 99.8 263 34.2
AUR62035619 Chenopodium quinoa HOM05D003457 ORTHO05D009249 7.2e-19 99.0 269 32.7
Sc13g0010260 Simmondsia chinensis HOM05D003457 ORTHO05D009249 1.2e-18 98.2 338 32.0
BraA02t08999Z Brassica rapa HOM05D003457 ORTHO05D009249 1.6e-18 97.8 203 35.0
BcaC03g17967 Brassica carinata HOM05D003457 ORTHO05D009249 2.1e-18 97.4 201 35.3
A02p40300 Brassica napus HOM05D003457 ORTHO05D009249 6.1e-18 95.9 204 34.8
AUR62006007 Chenopodium quinoa HOM05D003457 ORTHO05D009746 1.8e-17 94.4 254 32.3
BolC2t12082H Brassica oleracea HOM05D003457 ORTHO05D009249 5.1e-17 92.8 202 33.7
C02p60250 Brassica napus HOM05D003457 ORTHO05D009249 8.8e-17 92.0 242 32.2
CDE01G0392 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 4.8e-15 86.3 250 31.6
CDE02G1140 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 3.1e-14 83.6 255 30.6
Atru.chr12.2426 Acer truncatum HOM05D003457 ORTHO05D009249 6.9e-14 82.4 162 39.5
Lsat_1_v5_gn_7_39641 Lactuca sativa HOM05D003457 ORTHO05D009249 2.9e-12 77.0 217 32.3
Lalb_Chr08g0239631 Lupinus albus HOM05D003457 ORTHO05D009249 6.5e-12 75.9 206 32.0
Lsat_1_v5_gn_5_150000 Lactuca sativa HOM05D003457 ORTHO05D009249 1.8e-09 67.8 187 31.6
unitig_90.g27506 Utricularia gibba HOM05D003457 ORTHO05D009249 2.3e-09 67.4 141 40.4
PSO063G5804 Papaver somniferum HOM05D003457 ORTHO05D009249 1.1e-08 65.1 184 32.1
ECA233G0397 Erigeron canadensis HOM05D003457 ORTHO05D009249 2.6e-08 63.9 212 29.7


User provided reference genes

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