Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g30110 Fragaria vesca HOM05D006627 ORTHO05D007753 0.0e+00 2301.9 1179 100.0
FAN06G3118 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 2276.5 1179 99.0
FAN06G3804 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 2275.7 1179 99.2
FAN10G1026 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 2203.7 1179 96.4
FAN03G1328 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 2191.8 1179 95.7
FAN03G3330 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 2188.7 1179 95.6
FAN10G1355 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 2184.1 1179 95.9
FAN01G2627 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 2117.4 1145 95.4
RcHm_v2.0_Chr1g0378101 Rosa chinensis HOM05D006627 ORTHO05D007753 0.0e+00 1928.7 1189 85.8
Prupe.2G299600 Prunus persica HOM05D006627 ORTHO05D007753 0.0e+00 1236.5 1258 60.3
MD01G1207000 Malus domestica HOM05D006627 ORTHO05D007753 0.0e+00 1133.2 1333 54.7
MD07G1277900 Malus domestica HOM05D006627 ORTHO05D007753 0.0e+00 1133.2 1232 57.6
Haze_00034 Corylus avellana HOM05D006627 ORTHO05D007753 8.6e-147 525.8 1230 38.4
Thecc.03G182600 Theobroma cacao HOM05D006627 ORTHO05D007753 1.1e-136 492.3 1318 35.7
Duzib205G1471 Durio zibethinus HOM05D006627 ORTHO05D007753 3.2e-125 454.1 1254 35.0
Duzib084G0535 Durio zibethinus HOM05D006627 ORTHO05D007753 4.3e-122 443.7 1257 34.4
Ciclev10004200m.g Citrus clementina HOM05D006627 ORTHO05D007753 1.3e-118 432.2 1227 34.8
GSVIVG01028875001 Vitis vinifera HOM05D006627 ORTHO05D007753 1.2e-116 425.6 1238 35.5
TWI23G0587 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 2.1e-116 424.9 1229 34.1
COL.COLO4_28015 Corchorus olitorius HOM05D006627 ORTHO05D007753 8.7e-115 419.5 1164 35.1
Potri.004G079000 Populus trichocarpa HOM05D006627 ORTHO05D007753 2.0e-111 408.3 1316 32.4
Sabra04G0052500 Salix brachista HOM05D006627 ORTHO05D007753 3.8e-110 404.1 1269 33.0
Dinv28394 Davidia involucrata HOM05D006627 ORTHO05D007753 8.4e-110 402.9 1267 34.3
TWI14G0178 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 3.3e-106 391.0 1205 32.5
Potri.017G142600 Populus trichocarpa HOM05D006627 ORTHO05D007753 5.3e-104 383.6 1227 33.5
Gohir.A10G234800 Gossypium hirsutum HOM05D006627 ORTHO05D007753 2.9e-102 377.9 1172 33.7
Atru.chr1.386 Acer truncatum HOM05D006627 ORTHO05D007753 7.2e-101 373.2 1254 33.0
Atru.chr1.369 Acer truncatum HOM05D006627 ORTHO05D007753 1.0e-99 369.4 1264 32.9
Atru.ctg97_1.2 Acer truncatum HOM05D006627 ORTHO05D007753 1.0e-99 369.4 1264 32.9
Gohir.D10G247200 Gossypium hirsutum HOM05D006627 ORTHO05D007753 5.1e-99 367.1 1170 33.4
Gorai.011G285600 Gossypium raimondii HOM05D006627 ORTHO05D007753 8.8e-99 366.3 1170 33.4
Cpa.g.sc107.97 Carica papaya HOM05D006627 ORTHO05D007753 1.4e-96 359.0 1165 32.6
Sabra17G0119400 Salix brachista HOM05D001410 ORTHO05D006840 1.0e-94 352.8 1218 32.9
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 9.4e-93 346.3 1445 30.7
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 4.7e-92 344.0 1429 30.0
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 5.1e-91 340.5 1425 29.5
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 3.8e-86 324.3 1447 29.6
Lj1C1004T5 Lonicera japonica HOM05D006627 ORTHO05D007753 5.2e-83 313.9 1299 30.9
DCAR_020266 Daucus carota HOM05D006627 ORTHO05D007753 3.7e-81 307.8 1238 30.9
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 4.8e-73 280.8 1335 29.7
Actinidia34148 Actinidia chinensis HOM05D001410 ORTHO05D007753 1.0e-67 263.1 1190 31.0
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 7.5e-66 256.9 1256 29.7
CSS0035854 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 1.3e-65 256.1 1094 30.8
CSS0044230 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 1.3e-65 256.1 1094 30.8
Oeu060456.3 Olea europaea HOM05D006627 ORTHO05D007753 3.7e-65 254.6 1251 29.3
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 2.7e-63 248.4 1365 28.8
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 4.5e-63 247.7 1264 29.0
vmacro06637 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 3.8e-62 244.6 1222 28.8
Actinidia03134 Actinidia chinensis HOM05D006627 ORTHO05D007753 4.2e-61 241.1 1198 28.9
QL12p032277 Quercus lobata HOM05D006627 ORTHO05D007753 1.6e-60 239.2 1385 28.1
vmacro06638 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 1.6e-60 239.2 1216 28.4
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 7.5e-58 230.3 1523 26.6
Haze_08819 Corylus avellana HOM05D006627 ORTHO05D007753 5.9e-55 220.7 1380 28.6
GSVIVG01019397001 Vitis vinifera HOM05D006627 ORTHO05D007753 1.7e-54 219.2 1270 27.7
Rhsim03G0190100 Rhododendron simsii HOM05D006627 ORTHO05D007753 2.9e-54 218.4 1225 27.5
Rhsim07G0129200 Rhododendron simsii HOM05D006627 ORTHO05D007753 1.1e-53 216.5 1195 28.7
Cfa012198 Carpinus fangiana HOM05D006627 ORTHO05D007753 1.9e-53 215.7 1367 27.6
SalBow4G0794 Salvia bowleyana HOM05D006627 ORTHO05D007753 1.2e-52 213.0 1254 27.8
Cc02_g02490 Coffea canephora HOM05D006627 ORTHO05D007753 8.9e-51 206.8 1273 28.2
Actinidia28362 Actinidia chinensis HOM05D006627 ORTHO05D007753 1.5e-50 206.1 1333 27.3
Rhsim07G0129400 Rhododendron simsii HOM05D006627 ORTHO05D007753 2.9e-49 201.8 1222 26.6
Peaxi162Scf00444g00008 Petunia axillaris HOM05D006627 ORTHO05D007753 4.6e-47 194.5 1248 27.0
Actinidia31835 Actinidia chinensis HOM05D006627 ORTHO05D007753 4.3e-45 188.0 1084 27.3
Peaxi162Scf00618g00717 Petunia axillaris HOM05D006627 ORTHO05D007753 6.2e-44 184.1 1253 26.6
THA.LOC104800273 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 2.3e-43 182.2 1170 27.8
AUR62010719 Chenopodium quinoa HOM05D006627 ORTHO05D007753 5.2e-43 181.0 1257 27.4
AUR62027265 Chenopodium quinoa HOM05D006627 ORTHO05D007753 7.5e-42 177.2 1244 27.0
DCAR_009389 Daucus carota HOM05D006627 ORTHO05D007753 1.4e-40 172.9 1228 26.6
EL10Ac5g12810 Beta vulgaris HOM05D006627 ORTHO05D007753 7.1e-40 170.6 1242 27.9
MSTRG.27091 Avicennia marina HOM05D006627 ORTHO05D007753 6.0e-39 167.5 1244 26.5
Dinv35244 Davidia involucrata HOM05D006627 ORTHO05D007753 5.1e-38 164.5 219 49.3
Aa31LG3G8880 Aethionema arabicum HOM05D008661 ORTHO05D010872 6.6e-38 164.1 1167 27.4
AUR62027266 Chenopodium quinoa HOM05D006627 ORTHO05D007753 3.3e-37 161.8 1194 25.8
Dinv35242 Davidia involucrata HOM05D006627 ORTHO05D007753 8.1e-36 157.1 338 37.0
Hma1.2p1_0327F.1_g126380 Hydrangea macrophylla HOM05D006627 ORTHO05D007753 8.1e-36 157.1 595 32.9
EL10Ac5g12809 Beta vulgaris HOM05D006627 ORTHO05D007753 2.0e-34 152.5 1205 27.6
Sc22g0005410 Simmondsia chinensis HOM05D006627 ORTHO05D007753 2.0e-34 152.5 1332 27.7
Ah.07g206700 Amaranthus hybridus HOM05D006627 ORTHO05D007753 9.9e-34 150.2 1424 25.1
Hund11448 Selenicereus undatus HOM05D006627 ORTHO05D007753 1.1e-32 146.7 1304 27.3
Ah.07g196520 Amaranthus hybridus HOM05D006627 ORTHO05D007753 2.4e-32 145.6 1184 26.2
EL10Ac5g12811 Beta vulgaris HOM05D006627 ORTHO05D007753 2.4e-32 145.6 1409 24.8
ECA233G6261 Erigeron canadensis HOM05D006627 ORTHO05D007753 3.5e-31 141.7 1252 25.8
CAN.G236.7 Capsicum annuum HOM05D006627 ORTHO05D007753 4.6e-31 141.4 1164 24.7
AUR62031403 Chenopodium quinoa HOM05D006627 ORTHO05D007753 7.8e-31 140.6 1431 25.9
MSTRG.8718 Avicennia marina HOM05D006627 ORTHO05D007753 2.3e-30 139.0 1257 25.1
Sp7g23680 Schrenkiella parvula HOM05D008661 ORTHO05D010872 3.0e-30 138.7 1063 26.7
PGSC0003DMG400010123 Solanum tuberosum HOM05D006627 ORTHO05D007753 3.9e-30 138.3 1166 26.1
BcaB03g12481 Brassica carinata HOM05D008661 ORTHO05D010872 1.1e-29 136.7 1170 26.5
Thhalv10024596m.g Eutrema salsugineum HOM05D008661 ORTHO05D010872 2.5e-29 135.6 507 33.5
HanXRQChr13g0394821 Helianthus annuus HOM05D006627 ORTHO05D007753 3.3e-29 135.2 1227 25.2
RcHm_v2.0_Chr5g0081641 Rosa chinensis HOM05D006627 ORTHO05D007753 4.3e-29 134.8 279 38.0
Lsat_1_v5_gn_6_5180 Lactuca sativa HOM05D006627 ORTHO05D007753 7.3e-29 134.0 1223 25.7
CARHR233070 Cardamine hirsuta HOM05D008661 ORTHO05D010872 2.8e-28 132.1 1178 26.6
Manes.02G019000 Manihot esculenta HOM05D006627 ORTHO05D007753 2.8e-28 132.1 1221 25.4
Dinv37613 Davidia involucrata HOM05D006627 ORTHO05D007753 8.1e-28 130.6 1213 25.9
EL10Ac3g05437 Beta vulgaris HOM05D006627 ORTHO05D007753 8.9e-27 127.1 1388 25.2
THA.LOC104811963 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 8.4e-25 120.6 348 32.8
Actinidia14583 Actinidia chinensis HOM05D006627 ORTHO05D007753 4.6e-23 114.8 319 35.1
BcaB03g12479 Brassica carinata HOM05D008661 ORTHO05D010872 5.1e-22 111.3 614 30.5
BraA08t34056Z Brassica rapa HOM05D008661 ORTHO05D010872 6.6e-22 110.9 1144 25.8
BcaC07g38204 Brassica carinata HOM05D008661 ORTHO05D010872 1.5e-21 109.8 1144 25.6
C08p09590 Brassica napus HOM05D008661 ORTHO05D010872 1.5e-21 109.8 1143 25.7
BolC8t48627H Brassica oleracea HOM05D008661 ORTHO05D010872 1.5e-21 109.8 1144 25.6
Solyc03g025150.4 Solanum lycopersicum HOM05D006627 ORTHO05D007753 3.6e-20 105.1 1127 24.1
Sopen03g004000 Solanum pennellii HOM05D006627 ORTHO05D007753 1.1e-19 103.6 1159 24.6
CARHR233080 Cardamine hirsuta HOM05D008661 ORTHO05D010872 3.4e-18 98.6 250 36.8
Carub.0238s0001 Capsella rubella HOM05D008661 ORTHO05D010872 4.4e-18 98.2 344 29.7
Migut.F00307 Erythranthe guttata HOM05D006627 ORTHO05D007753 1.3e-17 96.7 1123 25.9
Lsat_1_v5_gn_9_57440 Lactuca sativa HOM05D006627 ORTHO05D007753 1.3e-17 96.7 333 30.3
Atru.chr9.2148 Acer truncatum HOM05D006627 ORTHO05D007753 2.2e-17 95.9 191 40.3
AL7G27440 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 2.2e-17 95.9 367 30.8
ATR0661G323 Amborella trichopoda HOM05D006627 ORTHO05D007753 4.9e-17 94.7 330 30.9
A08p21060 Brassica napus HOM05D008661 ORTHO05D010872 6.4e-17 94.4 331 30.2
A08p21040 Brassica napus HOM05D008661 ORTHO05D010872 1.4e-16 93.2 336 30.4
Carub.0007s1533 Capsella rubella HOM05D008661 ORTHO05D010872 9.3e-16 90.5 345 29.6
AT5G52530 Arabidopsis thaliana HOM05D008661 ORTHO05D010872 4.6e-15 88.2 233 36.1
ECA232G3189 Erigeron canadensis HOM05D006627 ORTHO05D007753 3.0e-14 85.5 400 29.5
AL8G26990 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 1.5e-13 83.2 234 33.3
Os08g0430000 Oryza sativa ssp. japonica HOM05D006627 ORTHO05D007753 1.5e-13 83.2 1384 25.0
TWI60G0847 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 2.5e-13 82.4 279 32.3
HPP92_025630 Vanilla planifolia HOM05D006627 ORTHO05D007753 1.3e-12 80.1 744 25.5
unitig_46.g18802 Utricularia gibba HOM05D006627 ORTHO05D007753 3.6e-12 78.6 1165 22.7
Atru.chr9.2147 Acer truncatum HOM05D006627 ORTHO05D007753 6.2e-12 77.8 1029 23.4
Dinv35243 Davidia involucrata HOM05D006627 ORTHO05D007753 4.0e-11 75.1 508 26.8
CDE07G1237 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 9.0e-11 73.9 698 24.6
Sp6g14700 Schrenkiella parvula HOM05D008661 ORTHO05D010872 1.3e-09 70.1 293 29.4
Carub.0008s1265 Capsella rubella HOM05D008661 ORTHO05D010872 1.7e-09 69.7 238 29.4
HanXRQChr09g0252481 Helianthus annuus HOM05D029832 ORTHO05D007753 2.9e-09 68.9 328 28.7
Cpa.g.sc107.94 Carica papaya HOM05D006627 ORTHO05D007753 1.4e-08 66.6 295 27.5
Lsat_1_v5_gn_2_131160 Lactuca sativa HOM05D029832 ORTHO05D007753 1.9e-08 66.2 442 24.7
CDE04G0350 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 4.2e-08 65.1 1028 24.9
Zm00001eb179470 Zea mays HOM05D006627 ORTHO05D007753 9.3e-08 63.9 1389 23.0
BcaC04g20573 Brassica carinata HOM05D008661 ORTHO05D010872 6.0e-07 61.2 300 27.3
C09p42010 Brassica napus HOM05D008661 ORTHO05D010872 7.9e-07 60.8 300 27.3
BolC9t57083H Brassica oleracea HOM05D008661 ORTHO05D010872 7.9e-07 60.8 300 27.3
BraA10t43090Z Brassica rapa HOM05D008661 ORTHO05D010872 1.0e-06 60.5 300 27.3
BcaB08g35607 Brassica carinata HOM05D008661 ORTHO05D010872 3.9e-06 58.5 358 26.3


User provided reference genes

Program Settings