Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 8.3e-137 490.3 243 100.0
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 8.3e-137 490.3 243 100.0
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 8.3e-137 490.3 243 100.0
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 7.8e-135 483.8 243 98.8
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 1.9e-133 479.2 243 97.9
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 2.0e-127 459.1 245 93.1
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 1.7e-113 412.9 243 85.2
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 4.6e-111 404.8 243 82.7
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 4.3e-109 398.3 243 82.3
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 5.4e-104 381.3 245 77.6
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 5.1e-102 374.8 243 75.3
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 1.9e-101 372.9 244 77.5
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 1.1e-99 367.1 243 75.3
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 4.4e-98 361.7 243 75.3
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 9.9e-98 360.5 243 74.9
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 9.9e-98 360.5 243 74.9
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 1.7e-97 359.8 244 76.2
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.4e-96 356.7 245 73.9
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 1.9e-96 356.3 243 74.5
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 1.9e-96 356.3 243 74.5
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 9.3e-96 354.0 243 74.5
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 2.1e-95 352.8 244 74.6
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 2.1e-95 352.8 243 72.4
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 2.7e-95 352.4 247 72.5
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 3.5e-95 352.1 243 74.9
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 4.6e-95 351.7 245 73.5
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 1.7e-94 349.7 244 73.0
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 3.0e-94 349.0 243 72.8
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 3.9e-94 348.6 243 73.3
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 3.9e-94 348.6 243 72.0
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 5.1e-94 348.2 250 70.4
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 1.5e-93 346.7 243 72.0
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 1.5e-93 346.7 243 72.0
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 3.3e-93 345.5 244 73.8
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 4.3e-93 345.1 244 73.0
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 5.6e-93 344.7 245 73.1
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 7.3e-93 344.4 243 72.4
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 1.3e-92 343.6 243 71.6
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 1.3e-92 343.6 243 70.8
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 6.2e-92 341.3 245 73.1
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 8.1e-92 340.9 243 72.4
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 1.1e-91 340.5 243 71.2
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.4e-91 340.1 245 71.4
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 3.1e-91 339.0 243 70.8
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 4.0e-91 338.6 243 70.8
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 5.3e-91 338.2 243 73.7
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 5.3e-91 338.2 244 70.5
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 1.2e-90 337.0 231 72.7
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 4.5e-90 335.1 222 74.3
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 1.3e-89 333.6 237 72.2
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 1.3e-89 333.6 243 69.5
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 1.3e-89 333.6 243 67.9
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 4.9e-89 331.6 253 67.2
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.1e-88 330.5 222 73.4
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 1.1e-88 330.5 243 67.9
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 1.4e-88 330.1 243 71.2
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 2.4e-88 329.3 195 83.1
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 6.0e-87 324.7 219 76.3
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 1.0e-86 323.9 249 66.7
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.8e-86 323.2 224 72.8
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 8.7e-86 320.9 240 70.8
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 2.5e-85 319.3 246 65.0
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 2.5e-85 319.3 245 69.4
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 2.5e-85 319.3 222 71.6
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 1.3e-84 317.0 246 65.4
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 3.7e-84 315.5 206 72.8
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 6.2e-84 314.7 239 64.9
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 6.2e-84 314.7 251 65.7
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 8.1e-84 314.3 245 66.1
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 8.1e-84 314.3 246 67.9
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 1.1e-83 313.9 256 64.5
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 3.1e-83 312.4 245 68.6
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 3.1e-83 312.4 213 73.2
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 4.0e-83 312.0 246 67.9
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 4.0e-83 312.0 254 66.1
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 5.3e-83 311.6 243 65.0
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 2.6e-82 309.3 189 77.2
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 2.6e-82 309.3 220 71.4
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 3.4e-82 308.9 245 65.3
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 4.5e-82 308.5 227 69.6
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 5.8e-82 308.1 231 66.2
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 3.8e-81 305.4 245 66.9
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 3.8e-81 305.4 247 65.2
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 8.4e-81 304.3 247 65.2
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 2.5e-80 302.8 248 63.3
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 2.5e-80 302.8 245 67.8
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 3.2e-80 302.4 247 64.0
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 4.2e-80 302.0 210 71.0
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 5.5e-80 301.6 248 64.9
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 1.2e-79 300.4 253 61.7
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 1.6e-79 300.1 205 72.2
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 2.1e-79 299.7 253 61.7
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 2.7e-79 299.3 244 68.0
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 4.6e-79 298.5 221 68.8
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 7.9e-79 297.7 243 63.8
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 7.9e-79 297.7 189 76.2
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 1.8e-78 296.6 255 61.2
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 3.9e-78 295.4 228 66.7
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 8.7e-78 294.3 194 75.3
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 8.7e-78 294.3 249 62.2
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 1.9e-77 293.1 252 62.3
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 7.4e-77 291.2 248 63.3
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 9.6e-77 290.8 217 69.6
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 1.1e-75 287.3 202 72.3
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 1.4e-75 287.0 247 62.3
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 1.4e-75 287.0 247 62.3
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 2.4e-75 286.2 254 61.0
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 4.0e-75 285.4 231 60.2
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 2.6e-74 282.7 194 75.3
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 8.4e-73 277.7 193 71.5
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 3.5e-71 272.3 257 57.6
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 7.9e-71 271.2 251 59.8
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 3.0e-70 269.2 203 70.9
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 2.2e-68 263.1 162 79.6
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 2.4e-67 259.6 223 60.5
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 7.7e-58 228.0 204 61.3
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 3.0e-54 216.1 122 85.2
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 2.0e-53 213.4 121 82.6
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 5.7e-53 211.8 121 84.3
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.6e-47 193.7 177 57.6
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 3.9e-46 189.1 142 60.6
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 2.6e-45 186.4 180 48.3
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 9.7e-45 184.5 112 75.0
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 4.1e-43 179.1 174 50.6
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 1.6e-42 177.2 166 56.6
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 4.0e-38 162.5 152 50.0
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 5.3e-35 152.1 174 48.3
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 2.7e-31 139.8 178 39.9
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 1.7e-25 120.6 69 82.6
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 1.2e-21 107.8 117 55.6
Nn2g10688 Nelumbo nucifera HOM05D005690 ORTHO05D007075 4.1e-19 99.4 102 53.9
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 2.8e-15 86.7 143 30.1
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 3.1e-14 83.2 124 43.5
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 4.4e-13 79.3 132 34.1
HanXRQChr10g0292531 Helianthus annuus HOM05D005690 ORTHO05D007075 8.0e-07 58.5 67 49.3


User provided reference genes

Program Settings