Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 0.0e+00 1324.3 755 100.0
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 0.0e+00 1317.0 755 99.6
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 0.0e+00 1294.6 779 96.0
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 0.0e+00 1269.2 755 96.0
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 0.0e+00 1264.6 755 93.6
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 0.0e+00 1256.1 755 94.8
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 0.0e+00 1223.4 756 93.0
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 5.7e-253 877.9 778 68.3
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 6.0e-234 814.7 793 64.4
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 9.8e-229 797.3 800 62.0
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 3.7e-228 795.4 802 61.0
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 7.8e-226 787.7 800 61.5
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 8.1e-223 777.7 802 61.6
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 8.9e-222 774.2 778 64.9
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 1.3e-217 760.4 776 60.4
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 2.5e-216 756.1 801 58.4
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 5.6e-216 755.0 775 60.5
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 1.2e-215 753.8 774 61.0
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 2.1e-215 753.1 775 60.9
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 7.6e-213 744.6 775 60.5
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 9.9e-213 744.2 779 59.6
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 8.4e-212 741.1 790 59.0
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 1.7e-209 733.4 795 60.4
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 3.6e-207 725.7 798 58.8
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 1.4e-203 713.8 793 56.2
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 2.4e-203 713.0 804 58.6
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 3.5e-202 709.1 788 58.1
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 1.8e-201 706.8 785 56.1
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 8.7e-201 704.5 801 56.2
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 5.6e-200 701.8 818 54.9
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 1.3e-199 700.7 789 57.7
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 1.3e-199 700.7 817 54.7
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 1.8e-193 680.2 807 54.9
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 5.1e-193 678.7 795 54.7
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 5.1e-193 678.7 802 56.6
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 1.9e-192 676.8 792 54.9
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 2.5e-192 676.4 834 54.7
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 5.6e-192 675.2 790 58.9
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 2.1e-191 673.3 797 55.6
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 6.2e-191 671.8 788 56.5
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 5.8e-189 665.2 780 56.3
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 8.4e-188 661.4 727 59.6
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 2.5e-187 659.8 814 54.1
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 9.3e-187 657.9 805 53.8
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 4.6e-186 655.6 838 52.1
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 1.5e-184 650.6 788 53.7
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 4.3e-184 649.0 802 54.0
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 7.4e-184 648.3 785 53.1
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 2.8e-183 646.4 946 48.3
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 5.3e-182 642.1 761 56.2
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 1.7e-180 637.1 811 54.7
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 1.7e-180 637.1 704 56.5
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 3.8e-180 636.0 771 55.0
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 1.9e-179 633.6 775 53.3
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 1.9e-179 633.6 808 53.0
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 1.9e-176 623.6 787 51.8
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 2.5e-176 623.2 772 56.2
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 2.5e-176 623.2 788 53.2
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 7.4e-176 621.7 789 53.2
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 8.2e-175 618.2 873 50.6
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 7.7e-173 611.7 770 52.6
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.0e-172 611.3 816 52.3
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 1.7e-172 610.5 793 53.3
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 2.9e-172 609.8 778 56.0
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 3.6e-170 602.8 784 51.3
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 1.4e-169 600.9 772 54.3
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 5.7e-168 595.5 822 51.9
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 1.7e-167 594.0 786 52.5
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 4.8e-167 592.4 784 50.6
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 4.8e-167 592.4 804 51.0
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 9.1e-166 588.2 788 50.3
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 7.7e-165 585.1 772 54.1
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 7.7e-165 585.1 813 51.3
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 2.2e-164 583.6 612 60.6
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 2.9e-164 583.2 804 50.7
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 6.5e-164 582.0 612 60.5
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 1.4e-163 580.9 780 52.8
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 3.9e-161 572.8 787 50.6
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 4.4e-160 569.3 788 50.3
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 5.7e-160 568.9 789 49.2
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 9.7e-160 568.2 789 50.4
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 4.8e-159 565.8 786 49.9
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 4.8e-159 565.8 792 50.3
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 5.9e-157 558.9 805 48.7
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 1.7e-156 557.4 631 56.4
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 2.9e-156 556.6 777 49.4
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 1.9e-155 553.9 790 50.8
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 3.6e-154 549.7 818 48.7
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 1.4e-153 547.7 778 49.6
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 1.4e-153 547.7 778 50.8
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 2.6e-152 543.5 795 47.5
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 1.1e-150 538.1 779 49.8
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 1.2e-149 534.6 711 53.9
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 1.6e-149 534.3 783 52.1
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 3.5e-149 533.1 780 50.9
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 3.5e-149 533.1 780 50.9
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 3.5e-149 533.1 780 50.9
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 4.5e-149 532.7 781 49.6
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 1.0e-148 531.6 772 50.1
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 1.1e-147 528.1 782 50.4
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 1.1e-147 528.1 779 50.8
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 1.9e-147 527.3 708 51.3
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 3.2e-147 526.6 603 59.5
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 4.2e-147 526.2 779 50.4
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 2.3e-145 520.4 777 49.3
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 4.0e-145 519.6 525 59.8
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 6.3e-143 512.3 703 52.3
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 5.4e-142 509.2 789 48.8
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 1.2e-141 508.1 782 48.5
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 1.6e-141 507.7 779 49.7
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 1.3e-140 504.6 773 48.1
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 1.3e-140 504.6 508 59.8
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 1.2e-138 498.0 784 49.9
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 4.7e-138 496.1 772 47.8
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 1.0e-137 495.0 810 46.3
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 4.0e-137 493.0 781 48.0
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 5.4e-134 482.6 782 47.4
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 5.0e-132 476.1 782 47.6
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 7.3e-131 472.2 788 47.3
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 3.0e-129 466.8 784 44.9
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 5.7e-128 462.6 769 46.6
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 7.5e-128 462.2 808 42.5
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 4.6e-125 453.0 721 47.7
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 7.8e-125 452.2 712 47.6
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 1.3e-124 451.4 669 49.8
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 1.5e-120 438.0 763 42.3
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 4.4e-120 436.4 773 45.8
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 6.4e-119 432.6 802 42.9
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 1.1e-115 421.8 843 40.7
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 1.1e-113 415.2 741 41.6
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 1.0e-108 398.7 758 40.6
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 9.9e-104 382.1 604 46.7
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 3.2e-102 377.1 497 52.5
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 2.1e-101 374.4 696 43.5
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 2.8e-98 364.0 354 63.3
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 5.3e-89 333.2 737 35.7
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 2.2e-87 327.8 354 55.6
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 3.2e-86 323.9 384 53.4
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 4.9e-79 300.1 344 52.6
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 7.4e-75 286.2 358 54.5
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 1.3e-63 248.8 292 54.1
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 2.5e-62 244.6 251 59.0
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 2.0e-56 224.9 678 31.9
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 1.3e-55 222.2 191 68.1
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 6.5e-55 219.9 396 43.4
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 6.3e-50 203.4 749 30.2
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 7.0e-49 199.9 390 40.8
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 6.1e-45 186.8 220 49.1
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 1.4e-44 185.7 171 64.3
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 4.1e-33 147.5 183 53.6
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 1.5e-30 139.0 143 53.1
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 2.3e-28 131.7 274 40.9
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 9.8e-27 126.3 109 71.6
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 1.2e-21 109.4 138 48.6
BcaC08g45137 Brassica carinata HOM05D003721 ORTHO05D004303 2.2e-18 98.6 316 34.2
SEGI_39264 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 8.3e-18 96.7 369 28.5
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 2.4e-17 95.1 95 53.7
Actinidia37723 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.3e-15 89.4 222 36.0
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 5.0e-15 87.4 108 54.6
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 1.1e-14 86.3 123 42.3
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 9.5e-14 83.2 202 33.2
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 9.5e-14 83.2 191 33.5
Actinidia21288 Actinidia chinensis HOM05D003721 ORTHO05D004303 4.7e-13 80.9 63 69.8
Actinidia10079 Actinidia chinensis HOM05D003721 ORTHO05D004303 4.0e-12 77.8 89 59.6
Actinidia10077 Actinidia chinensis HOM05D003721 ORTHO05D004303 8.3e-10 70.1 148 43.2
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 2.0e-08 65.5 70 62.9
Carub.0005s2826 Capsella rubella HOM05D003721 ORTHO05D004303 6.0e-08 63.9 236 32.6
arahy.Tifrunner.gnm1.ann1.W0C6E5 Arachis hypogaea HOM05D000200 ORTHO05D000262 4.3e-06 57.8 109 41.3


User provided reference genes

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