Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 2.7e-236 821.6 415 100.0
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.7e-235 818.9 415 99.5
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 8.6e-235 816.6 415 99.5
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 9.2e-229 796.6 415 97.8
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.5e-228 794.7 415 97.6
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.7e-227 792.3 415 97.1
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 5.6e-218 760.8 418 93.5
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 2.0e-178 629.4 419 79.2
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 2.2e-174 615.9 382 81.7
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 7.9e-172 607.4 417 75.1
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 2.7e-164 582.4 418 72.2
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 5.7e-162 574.7 419 69.0
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 9.7e-162 573.9 419 70.4
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 2.2e-161 572.8 419 68.7
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 1.6e-159 566.6 423 68.8
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 1.3e-158 563.5 404 73.3
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 1.1e-157 560.5 417 69.3
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 7.2e-157 557.8 409 70.4
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 8.0e-156 554.3 408 69.4
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 4.0e-155 552.0 423 69.0
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 2.0e-154 549.7 408 69.9
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 2.6e-154 549.3 414 69.1
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 2.8e-153 545.8 414 67.9
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 4.1e-152 542.0 411 67.6
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 5.9e-151 538.1 411 67.4
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 2.9e-150 535.8 353 75.1
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 1.1e-149 533.9 420 65.7
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 1.2e-148 530.4 399 68.4
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 3.6e-148 528.9 406 68.2
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 4.7e-148 528.5 411 67.4
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 1.0e-147 527.3 407 67.3
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 2.3e-147 526.2 404 66.8
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 4.0e-147 525.4 408 67.9
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 5.2e-147 525.0 419 66.6
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 3.4e-146 522.3 416 65.6
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 4.4e-146 521.9 404 66.6
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 1.3e-145 520.4 411 65.9
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 1.7e-145 520.0 331 76.7
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 2.2e-145 519.6 381 70.6
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 4.9e-145 518.5 380 70.5
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 1.4e-144 516.9 413 66.6
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 3.1e-144 515.8 414 63.3
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 3.1e-144 515.8 380 68.9
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 7.0e-144 514.6 418 63.9
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 1.6e-143 513.5 418 63.9
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 2.0e-143 513.1 408 65.9
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 2.7e-143 512.7 415 64.6
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 3.5e-143 512.3 409 66.0
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 3.5e-143 512.3 415 65.8
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 1.7e-142 510.0 394 65.7
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 5.0e-142 508.4 398 65.1
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 5.0e-142 508.4 398 65.1
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 1.1e-141 507.3 365 68.8
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 2.5e-141 506.1 394 65.5
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 5.6e-141 505.0 362 68.2
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 9.5e-141 504.2 367 68.7
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 1.2e-140 503.8 363 69.4
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 1.6e-140 503.4 411 64.0
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 1.6e-140 503.4 416 62.5
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 2.1e-140 503.1 424 64.2
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 3.6e-140 502.3 363 68.6
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 6.1e-140 501.5 385 66.8
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 8.0e-140 501.1 400 67.0
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 8.0e-140 501.1 483 57.1
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 8.0e-140 501.1 411 63.0
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 1.0e-139 500.7 411 64.0
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.4e-139 500.4 399 63.9
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 2.3e-139 499.6 410 63.4
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 3.0e-139 499.2 369 67.5
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 3.0e-139 499.2 403 63.5
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 3.0e-139 499.2 414 61.8
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 4.0e-139 498.8 410 62.2
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 4.0e-139 498.8 396 64.6
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 6.8e-139 498.0 400 64.0
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 6.8e-139 498.0 400 64.0
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 8.9e-139 497.7 392 65.6
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 1.2e-138 497.3 420 62.6
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 1.2e-138 497.3 405 63.5
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 3.4e-138 495.7 419 62.3
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 4.4e-138 495.4 424 63.2
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 7.5e-138 494.6 392 65.8
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 8.3e-137 491.1 401 64.8
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 5.4e-136 488.4 358 65.6
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 5.4e-136 488.4 329 73.6
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 4.6e-135 485.3 358 64.5
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 5.9e-135 485.0 404 64.1
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 1.0e-134 484.2 418 62.0
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 6.6e-134 481.5 394 64.0
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 2.5e-133 479.6 366 62.0
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 7.3e-133 478.0 366 66.7
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 7.3e-133 478.0 414 57.0
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 1.2e-132 477.2 408 61.8
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 1.6e-132 476.9 380 64.2
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 2.1e-132 476.5 403 61.0
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 8.0e-132 474.6 414 61.6
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 1.4e-131 473.8 403 60.8
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.4e-131 473.8 410 61.7
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 2.3e-131 473.0 332 69.3
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 1.3e-129 467.2 410 60.7
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 1.7e-129 466.8 334 68.3
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 1.9e-128 463.4 372 64.2
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 2.4e-128 463.0 403 61.8
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 3.2e-128 462.6 403 61.0
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 5.4e-128 461.8 411 60.3
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 2.0e-127 459.9 390 61.5
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 6.0e-127 458.4 331 69.5
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 2.3e-126 456.4 411 60.1
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 1.6e-124 450.3 411 59.1
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 2.6e-122 443.0 314 70.4
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.1e-120 437.6 231 97.8
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 3.3e-117 426.0 304 66.8
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 1.1e-115 421.0 354 62.7
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 4.4e-114 415.6 333 62.5
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 2.9e-113 412.9 396 57.8
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 1.4e-112 410.6 386 57.3
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 7.1e-112 408.3 296 71.6
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 9.2e-112 407.9 348 60.1
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.2e-108 397.5 336 58.6
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.7e-108 395.6 363 54.3
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.6e-106 388.3 363 54.0
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 2.2e-105 386.7 416 52.4
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 2.4e-104 383.3 410 53.7
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 2.5e-101 373.2 380 51.3
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 4.2e-96 355.9 424 50.2
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 3.3e-93 346.3 282 64.2
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 8.1e-92 341.7 313 53.4
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 1.1e-85 321.2 239 66.9
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 7.4e-77 292.0 303 46.2
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 3.4e-74 283.1 252 60.7
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 5.9e-74 282.3 332 47.9
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 7.6e-74 282.0 318 45.0
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.3e-73 281.2 312 45.5
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.3e-69 266.5 310 44.5
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.8e-67 260.8 292 45.5
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.8e-65 253.1 287 43.2
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.9e-64 250.8 293 42.3
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.2e-64 248.8 290 43.4
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 1.0e-62 245.0 299 41.8
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.3e-62 243.8 289 40.5
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 3.9e-62 243.0 185 68.6
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.7e-62 242.3 291 42.3
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 7.4e-61 238.8 179 63.1
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.9e-59 232.3 267 43.1
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 2.0e-58 230.7 153 75.2
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.1e-56 224.9 121 99.2
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 5.3e-51 206.1 202 57.9
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 7.7e-50 202.2 386 33.9
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.6e-47 194.5 153 56.9
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 8.8e-46 188.7 181 56.4
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.5e-45 188.0 318 37.1
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.8e-44 183.0 309 33.7
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.1e-43 179.9 377 34.0
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.6e-42 177.9 359 33.7
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.7e-42 177.2 325 35.4
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.1e-39 167.5 142 61.3
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 2.7e-39 167.2 219 41.6
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.7e-39 166.4 309 32.0
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 2.4e-35 154.1 80 98.8
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.7e-34 150.6 319 27.6
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 3.2e-32 143.7 293 34.8
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.0e-30 138.7 311 28.9
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 9.2e-27 125.6 119 50.4
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.2e-26 125.2 103 54.4
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.6e-26 124.8 293 28.7
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.0e-25 122.1 218 30.7
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.0e-25 122.1 76 76.3
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 2.9e-25 120.6 341 28.4
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 1.1e-24 118.6 76 77.6
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 3.3e-24 117.1 316 29.4
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.6e-23 114.8 167 37.7
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.8e-23 114.0 308 31.2
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 4.9e-20 103.2 316 28.5
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 9.2e-19 99.0 310 28.1
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 3.9e-17 93.6 345 27.0
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 1.9e-16 91.3 304 25.3
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 2.2e-12 77.8 61 67.2
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.6e-10 71.6 143 31.5
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.2e-06 56.6 91 36.3


User provided reference genes

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