Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g09940 Fragaria vesca HOM05D002637 ORTHO05D009046 3.5e-77 291.6 150 100.0
FAN06G1198 Fragaria x ananassa HOM05D000001 ORTHO05D009896 3.5e-77 291.6 150 100.0
FAN06G2425 Fragaria x ananassa HOM05D000001 ORTHO05D009896 2.3e-76 288.9 150 98.7
FAN01G0925 Fragaria x ananassa HOM05D002637 ORTHO05D009046 4.9e-71 271.2 150 92.0
FAN03G2438 Fragaria x ananassa HOM05D002637 ORTHO05D009046 1.0e-68 263.5 150 88.7
Actinidia33504 Actinidia chinensis HOM05D002637 ORTHO05D009046 4.6e-45 184.9 148 57.4
FAN10G0921 Fragaria x ananassa HOM05D002637 ORTHO05D009046 7.8e-45 184.1 150 69.3
Migut.B01543 Erythranthe guttata HOM05D002637 ORTHO05D009046 3.9e-44 181.8 148 57.4
Prupe.2G128200 Prunus persica HOM05D002637 ORTHO05D009046 6.6e-44 181.0 148 58.1
vmacro21056 Vaccinium macrocarpon HOM05D002637 ORTHO05D009046 7.3e-43 177.6 148 55.4
Manes.12G109800 Manihot esculenta HOM05D002637 ORTHO05D009046 2.8e-42 175.6 148 55.4
RcHm_v2.0_Chr1g0347501 Rosa chinensis HOM05D002637 ORTHO05D009046 8.1e-42 174.1 144 59.7
SGA_v2.0_scaffold153G36910 Striga asiatica HOM05D002637 ORTHO05D008095 1.8e-41 172.9 148 55.4
Cc02_g25010 Coffea canephora HOM05D002637 ORTHO05D009046 2.4e-41 172.6 148 53.4
HanXRQChr16g0520331 Helianthus annuus HOM05D002637 ORTHO05D009046 3.4e-40 168.7 148 54.7
CARHR245840 Cardamine hirsuta HOM05D002637 ORTHO05D009046 1.7e-39 166.4 144 53.5
AL7G13350 Arabidopsis lyrata HOM05D002637 ORTHO05D009046 2.2e-39 166.0 144 53.5
PGR042G3993 Punica granatum HOM05D002637 ORTHO05D009046 2.2e-39 166.0 147 53.7
MD07G1104600 Malus domestica HOM05D002637 ORTHO05D009046 2.9e-39 165.6 148 53.4
ECA234G1562 Erigeron canadensis HOM05D002637 ORTHO05D009046 3.8e-39 165.2 148 54.1
DCAR_029750 Daucus carota HOM05D002637 ORTHO05D000193 6.4e-39 164.5 148 54.1
FAN10G1525 Fragaria x ananassa HOM05D002637 ORTHO05D009046 6.4e-39 164.5 173 59.5
Lsat_1_v5_gn_4_46620 Lactuca sativa HOM05D002637 ORTHO05D009046 6.4e-39 164.5 149 55.7
AT4G37445 Arabidopsis thaliana HOM05D002637 ORTHO05D009046 8.4e-39 164.1 144 52.8
Carub.0007s0284 Capsella rubella HOM05D002637 ORTHO05D009046 1.1e-38 163.7 144 52.8
Sc02g0003060 Simmondsia chinensis HOM05D002637 ORTHO05D009046 3.2e-38 162.2 141 52.5
Dinv43628 Davidia involucrata HOM05D002637 ORTHO05D009046 4.2e-38 161.8 148 50.0
MSTRG.17133 Avicennia marina HOM05D002637 ORTHO05D009046 5.4e-38 161.4 148 51.4
MD07G1105300 Malus domestica HOM05D002637 ORTHO05D009046 9.3e-38 160.6 148 51.4
Sp7g35140 Schrenkiella parvula HOM05D002637 ORTHO05D009046 1.6e-37 159.8 144 51.4
Thhalv10026444m.g Eutrema salsugineum HOM05D002637 ORTHO05D009046 2.1e-37 159.5 144 51.4
Psat4g225240 Pisum sativum HOM05D002637 ORTHO05D009046 2.7e-37 159.1 145 50.3
Potri.007G051200 Populus trichocarpa HOM05D002637 ORTHO05D009046 3.5e-37 158.7 141 50.4
TWI53G0102 Tripterygium wilfordii HOM05D002637 ORTHO05D009046 4.6e-37 158.3 148 50.7
Haze_02819 Corylus avellana HOM05D002637 ORTHO05D009046 1.3e-36 156.8 148 52.0
Eucgr.E01572 Eucalyptus grandis HOM05D002637 ORTHO05D009046 1.3e-36 156.8 142 52.8
BcaNung03660 Brassica carinata HOM05D002637 ORTHO05D009046 1.8e-36 156.4 142 52.1
THA.LOC104807614 Tarenaya hassleriana HOM05D002637 ORTHO05D009046 1.8e-36 156.4 149 51.0
unitig_8.g3841 Utricularia gibba HOM05D002637 ORTHO05D008095 1.8e-36 156.4 144 51.4
Cfa011083 Carpinus fangiana HOM05D002637 ORTHO05D009046 2.3e-36 156.0 149 54.4
EL10Ac1g00772 Beta vulgaris HOM05D002637 ORTHO05D009046 5.1e-36 154.8 148 50.7
BcaNung05079 Brassica carinata HOM05D002637 ORTHO05D009046 5.1e-36 154.8 144 50.0
Duzib187G0274 Durio zibethinus HOM05D002637 ORTHO05D009046 8.7e-36 154.1 149 53.7
TAR629G0766 Trochodendron aralioides HOM05D002637 ORTHO05D009046 1.1e-35 153.7 147 51.0
Lj3g0027924 Lotus japonicus HOM05D002637 ORTHO05D009046 2.5e-35 152.5 147 49.7
Medtr8g006765 Medicago truncatula HOM05D002637 ORTHO05D009046 2.5e-35 152.5 146 48.6
Aqoxy3G02748 Aquilegia oxysepala HOM05D002637 ORTHO05D009046 1.3e-34 150.2 145 49.7
Lalb_Chr13g0290561 Lupinus albus HOM05D002637 ORTHO05D009046 1.6e-34 149.8 148 48.0
C01p01670 Brassica napus HOM05D002637 ORTHO05D009046 2.1e-34 149.4 156 47.4
BolC1t00161H Brassica oleracea HOM05D002637 ORTHO05D009046 2.1e-34 149.4 156 47.4
Oeu063229.1 Olea europaea HOM05D002637 ORTHO05D009046 2.1e-34 149.4 148 48.0
Thecc.01G067000 Theobroma cacao HOM05D002637 ORTHO05D009046 2.1e-34 149.4 150 50.0
PSO063G5174 Papaver somniferum HOM05D002637 ORTHO05D009046 3.7e-34 148.7 144 48.6
TPR.G33150 Trifolium pratense HOM05D002637 ORTHO05D009046 3.7e-34 148.7 145 46.9
Ciclev10026646m.g Citrus clementina HOM05D002637 ORTHO05D009046 4.8e-34 148.3 151 49.7
Duzib147G1684 Durio zibethinus HOM05D002637 ORTHO05D009046 4.8e-34 148.3 150 49.3
Hund17084 Selenicereus undatus HOM05D002637 ORTHO05D009046 4.8e-34 148.3 137 52.6
A01p01510 Brassica napus HOM05D002637 ORTHO05D009046 6.2e-34 147.9 154 48.1
BraA01t00144Z Brassica rapa HOM05D002637 ORTHO05D009046 6.2e-34 147.9 154 48.1
QL04p030668 Quercus lobata HOM05D002637 ORTHO05D009046 1.1e-33 147.1 144 50.0
Ca_14060_v3 Cicer arietinum L. HOM05D002637 ORTHO05D009046 1.4e-33 146.7 145 46.9
CANSAT21G1080 Cannabis sativa HOM05D002637 ORTHO05D009046 2.4e-33 146.0 146 49.3
Nn1g00869 Nelumbo nucifera HOM05D002637 ORTHO05D009046 5.3e-33 144.8 141 46.8
Nitab4.5_0003696g0080 Nicotiana tabacum HOM05D002637 ORTHO05D009046 5.3e-33 144.8 150 48.0
Sabra07G0045200 Salix brachista HOM05D002328 ORTHO05D002433 6.9e-33 144.4 163 43.6
BcaNung02947 Brassica carinata HOM05D002637 ORTHO05D009046 9.0e-33 144.1 159 45.9
TAR629G0936 Trochodendron aralioides HOM05D002637 ORTHO05D009046 1.2e-32 143.7 147 49.7
Manes.13G115300 Manihot esculenta HOM05D002637 ORTHO05D009046 2.0e-32 142.9 147 46.3
Atru.chr3.227 Acer truncatum HOM05D002637 ORTHO05D009046 2.6e-32 142.5 145 47.6
Gorai.011G107300 Gossypium raimondii HOM05D002637 ORTHO05D009046 3.4e-32 142.1 142 48.6
Lj1g0023703 Lotus japonicus HOM05D002637 ORTHO05D009046 3.4e-32 142.1 142 47.2
COL.COLO4_11517 Corchorus olitorius HOM05D002637 ORTHO05D009046 5.8e-32 141.4 143 49.7
Medtr4g094628 Medicago truncatula HOM05D002637 ORTHO05D009046 5.8e-32 141.4 150 46.0
CiPaw.14G021200 Carya illinoinensis HOM05D002637 ORTHO05D009046 1.7e-31 139.8 139 48.2
Psat3g194760 Pisum sativum HOM05D002637 ORTHO05D009046 1.7e-31 139.8 143 46.9
TPR.G12142 Trifolium pratense HOM05D002637 ORTHO05D009046 3.8e-31 138.7 149 46.3
AUR62023418 Chenopodium quinoa HOM05D000001 ORTHO05D009896 2.4e-30 136.0 148 44.6
arahy.Tifrunner.gnm1.ann1.TJ44DN Arachis hypogaea HOM05D002637 ORTHO05D009046 4.2e-30 135.2 146 46.6
arahy.Tifrunner.gnm1.ann1.P225XX Arachis hypogaea HOM05D002637 ORTHO05D009046 5.5e-30 134.8 146 46.6
Rhsim01G0139600 Rhododendron simsii HOM05D002637 ORTHO05D009046 5.5e-30 134.8 121 54.5
VMungo0331G2001 Vigna mungo HOM05D002637 ORTHO05D009046 5.5e-30 134.8 138 47.8
Sopen01g036190 Solanum pennellii HOM05D002637 ORTHO05D009046 6.0e-29 131.3 153 43.1
A01p01520 Brassica napus HOM05D002637 ORTHO05D009046 1.0e-28 130.6 147 45.6
BraA01t00145Z Brassica rapa HOM05D002637 ORTHO05D009046 1.0e-28 130.6 147 45.6
Ca_04041_v3 Cicer arietinum L. HOM05D002637 ORTHO05D008095 5.1e-28 128.3 133 45.9
Glyma.03G113700 Glycine max HOM05D002637 ORTHO05D009046 1.5e-27 126.7 142 42.3
Lj7A545G96 Lonicera japonica HOM05D002637 ORTHO05D009046 2.5e-27 125.9 129 50.4
Phvul.010G051600 Phaseolus vulgaris HOM05D002637 ORTHO05D009046 3.3e-27 125.6 143 42.0
Cpa.g.sc6.62 Carica papaya HOM05D003561 ORTHO05D004351 7.4e-27 124.4 148 43.9
TAR629G3341 Trochodendron aralioides HOM05D002637 ORTHO05D009046 9.6e-27 124.0 137 45.3
Manes.13G115400 Manihot esculenta HOM05D002637 ORTHO05D009046 3.7e-26 122.1 141 42.6
Aa31LG6G14300 Aethionema arabicum HOM05D002637 ORTHO05D009046 2.4e-25 119.4 143 42.0
Glyma.07G113000 Glycine max HOM05D002637 ORTHO05D009046 1.5e-24 116.7 140 42.1
AUR62013735 Chenopodium quinoa HOM05D002637 ORTHO05D009046 2.6e-24 115.9 119 46.2
Ca_24158_v3 Cicer arietinum L. HOM05D002637 ORTHO05D009046 2.6e-24 115.9 114 47.4
Ca_14062_v3 Cicer arietinum L. HOM05D000534 ORTHO05D009046 1.3e-23 113.6 113 46.9
GSVIVG01018261001 Vitis vinifera HOM05D002637 ORTHO05D009046 1.4e-22 110.2 119 44.5
Peaxi162Scf00030g00043 Petunia axillaris HOM05D002637 ORTHO05D009046 1.9e-22 109.8 111 46.8
RcHm_v2.0_Chr1g0347531 Rosa chinensis HOM05D002637 ORTHO05D009046 1.2e-21 107.1 91 65.9
Phvul.008G046000 Phaseolus vulgaris HOM05D002637 ORTHO05D009046 7.9e-21 104.4 108 46.3
GSVIVG01018259001 Vitis vinifera HOM05D002637 ORTHO05D009046 3.3e-19 99.0 108 47.2
A01p01540 Brassica napus HOM05D002637 ORTHO05D009046 7.4e-19 97.8 96 51.0
BcaNung03659 Brassica carinata HOM05D002637 ORTHO05D009046 3.7e-18 95.5 97 48.5
CSS0047370 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D009046 4.8e-18 95.1 87 54.0
BraA01t00146Z Brassica rapa HOM05D002637 ORTHO05D016052 6.3e-18 94.7 92 52.2
SalBow5G5579 Salvia bowleyana HOM05D002637 ORTHO05D009046 8.2e-18 94.4 142 38.7
VMungo1383G0183 Vigna mungo HOM05D002637 ORTHO05D009046 8.2e-18 94.4 94 48.9
TPR.G39072 Trifolium pratense HOM05D002637 ORTHO05D009046 1.8e-17 93.2 139 39.6
Os02g0126600 Oryza sativa ssp. japonica HOM05D002637 ORTHO05D009046 2.6e-16 89.4 135 33.3
ATR0057G030 Amborella trichopoda HOM05D002637 ORTHO05D009046 5.0e-15 85.1 132 34.8
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.4e-14 83.6 139 29.5
Zm00001eb230930 Zea mays HOM05D002637 ORTHO05D009046 1.9e-14 83.2 131 36.6
Nitab4.5_0003553g0040 Nicotiana tabacum HOM05D002637 ORTHO05D009046 4.2e-14 82.0 149 33.6
Prupe.2G128500 Prunus persica HOM05D000001 ORTHO05D009896 1.4e-12 77.0 94 45.7
Atru.chr3.216 Acer truncatum HOM05D002637 ORTHO05D009046 2.3e-12 76.3 67 55.2
BolC7t46653H Brassica oleracea HOM05D002637 ORTHO05D009046 8.8e-12 74.3 122 38.5
HPP92_005363 Vanilla planifolia HOM05D002637 ORTHO05D009046 8.8e-12 74.3 125 33.6
A03p65120 Brassica napus HOM05D002637 ORTHO05D009046 1.1e-11 73.9 113 40.7
Glyma.18G252700 Glycine max HOM05D002637 ORTHO05D009046 1.5e-11 73.6 73 47.9
BraA03t15571Z Brassica rapa HOM05D002637 ORTHO05D009046 7.4e-11 71.2 108 41.7
EL10Ac1g02043 Beta vulgaris HOM05D002637 ORTHO05D009046 1.3e-07 60.5 54 44.4
Nn3g21165 Nelumbo nucifera HOM05D005192 ORTHO05D006023 1.4e-06 57.0 140 27.9


User provided reference genes

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