Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g08522 Fragaria vesca HOM05D003187 ORTHO05D003630 1.5e-71 272.7 131 100.0
FAN04G2380 Fragaria x ananassa HOM05D003187 ORTHO05D003630 2.3e-61 238.8 122 93.4
FAN08G2825 Fragaria x ananassa HOM05D003187 ORTHO05D003630 2.3e-61 238.8 122 93.4
FAN13G0040 Fragaria x ananassa HOM05D003187 ORTHO05D003630 2.3e-61 238.8 122 93.4
FAN18G0443 Fragaria x ananassa HOM05D003187 ORTHO05D003630 2.3e-61 238.8 122 93.4
FAN18G2229 Fragaria x ananassa HOM05D003187 ORTHO05D003630 2.3e-61 238.8 122 93.4
RcHm_v2.0_Chr7g0194071 Rosa chinensis HOM05D003187 ORTHO05D003630 3.1e-61 238.4 122 92.6
FAN10G0795 Fragaria x ananassa HOM05D003187 ORTHO05D003630 2.4e-58 228.8 122 90.2
FAN06G4812 Fragaria x ananassa HOM05D003187 ORTHO05D003630 2.7e-57 225.3 125 87.2
Prupe.1G197600 Prunus persica HOM05D003187 ORTHO05D003630 1.5e-55 219.5 122 86.1
Prupe.7G059800 Prunus persica HOM05D003187 ORTHO05D003630 1.5e-55 219.5 122 85.2
MD04G1043000 Malus domestica HOM05D003187 ORTHO05D003630 1.9e-55 219.2 122 86.1
Glyma.02G254000 Glycine max HOM05D003187 ORTHO05D003630 3.3e-55 218.4 122 83.6
Lalb_Chr10g0104991 Lupinus albus HOM05D003187 ORTHO05D003630 4.3e-55 218.0 122 84.4
ClCG07G003910 Citrullus lanatus HOM05D003187 ORTHO05D003630 1.6e-54 216.1 122 85.2
Glyma.14G062500 Glycine max HOM05D003187 ORTHO05D003630 1.6e-54 216.1 122 83.6
LjContig00357g0016423 Lotus japonicus HOM05D003187 ORTHO05D003630 3.6e-54 214.9 122 82.8
Phvul.008G226900 Phaseolus vulgaris HOM05D003187 ORTHO05D003630 8.1e-54 213.8 122 82.8
arahy.Tifrunner.gnm1.ann1.GJ5BI6 Arachis hypogaea HOM05D003187 ORTHO05D003630 1.1e-53 213.4 122 82.8
arahy.Tifrunner.gnm1.ann1.P69V6G Arachis hypogaea HOM05D003187 ORTHO05D003630 1.1e-53 213.4 122 82.8
Medtr7g092860 Medicago truncatula HOM05D003187 ORTHO05D003630 1.1e-53 213.4 122 82.8
GSVIVG01016375001 Vitis vinifera HOM05D003187 ORTHO05D003630 1.1e-53 213.4 122 83.6
Psat6g127920 Pisum sativum HOM05D003187 ORTHO05D003630 2.3e-53 212.2 122 82.8
arahy.Tifrunner.gnm1.ann1.0XII0R Arachis hypogaea HOM05D003187 ORTHO05D003630 3.1e-53 211.8 122 82.0
MELO3C025148.2 Cucumis melo HOM05D003187 ORTHO05D003630 4.0e-53 211.5 122 84.4
CsaV3_5G008870 Cucumis sativus L. HOM05D003187 ORTHO05D003630 5.2e-53 211.1 122 83.6
QL08p062568 Quercus lobata HOM05D003187 ORTHO05D003630 5.2e-53 211.1 122 82.0
Sed0019761 Sechium edule HOM05D003187 ORTHO05D003630 5.2e-53 211.1 122 83.6
arahy.Tifrunner.gnm1.ann1.K3QQ9E Arachis hypogaea HOM05D003187 ORTHO05D003630 6.8e-53 210.7 122 82.0
CSS0009728 Camellia sinensis var. sinensis HOM05D003187 ORTHO05D003630 6.8e-53 210.7 122 82.0
CSS0010540 Camellia sinensis var. sinensis HOM05D003187 ORTHO05D003630 6.8e-53 210.7 122 82.0
Dinv20950 Davidia involucrata HOM05D003187 ORTHO05D003630 6.8e-53 210.7 122 82.0
Dinv20993 Davidia involucrata HOM05D003187 ORTHO05D003630 6.8e-53 210.7 122 82.0
VMungo0647G1330 Vigna mungo HOM05D003187 ORTHO05D003630 6.8e-53 210.7 127 79.5
TPR.G8049 Trifolium pratense HOM05D003187 ORTHO05D003630 1.2e-52 209.9 122 82.0
Nitab4.5_0000244g0020 Nicotiana tabacum HOM05D003187 ORTHO05D003630 1.5e-52 209.5 123 80.5
TAR369G0547 Trochodendron aralioides HOM05D003187 ORTHO05D003630 2.0e-52 209.1 127 78.7
Nitab4.5_0009672g0030 Nicotiana tabacum HOM05D003187 ORTHO05D003630 3.4e-52 208.4 119 82.4
vmacro14468 Vaccinium macrocarpon HOM05D003187 ORTHO05D003630 3.4e-52 208.4 122 80.3
Peaxi162Scf00297g01023 Petunia axillaris HOM05D003187 ORTHO05D003630 4.4e-52 208.0 122 81.1
Nitab4.5_0008689g0020 Nicotiana tabacum HOM05D003187 ORTHO05D003630 5.8e-52 207.6 119 81.5
Peaxi162Scf00457g00110 Petunia axillaris HOM05D003187 ORTHO05D003630 5.8e-52 207.6 122 80.3
Dinv34429 Davidia involucrata HOM05D003187 ORTHO05D003630 1.3e-51 206.5 122 79.5
Glyma.10G247850 Glycine max HOM05D003187 ORTHO05D003630 1.3e-51 206.5 122 80.3
Oeu027845.1 Olea europaea HOM05D003187 ORTHO05D003630 1.3e-51 206.5 122 81.1
PSO384G1733 Papaver somniferum HOM05D003187 ORTHO05D003630 1.3e-51 206.5 119 82.4
CiPaw.05G043000 Carya illinoinensis HOM05D003187 ORTHO05D003630 1.7e-51 206.1 122 79.5
Solyc07g006530.3 Solanum lycopersicum HOM05D003187 ORTHO05D003630 2.2e-51 205.7 122 79.5
Sopen07g002610 Solanum pennellii HOM05D003187 ORTHO05D003630 2.2e-51 205.7 122 79.5
PGSC0003DMG400027451 Solanum tuberosum HOM05D003187 ORTHO05D003630 2.2e-51 205.7 122 79.5
PSO339G2876 Papaver somniferum HOM05D003187 ORTHO05D003630 2.9e-51 205.3 119 81.5
CAN.G584.39 Capsicum annuum HOM05D003187 ORTHO05D003630 3.7e-51 204.9 122 79.5
CiPaw.06G148700 Carya illinoinensis HOM05D003187 ORTHO05D003630 6.4e-51 204.1 122 79.5
Migut.F00885 Erythranthe guttata HOM05D003187 ORTHO05D003630 6.4e-51 204.1 122 78.7
Gohir.A05G346100 Gossypium hirsutum HOM05D003187 ORTHO05D003630 6.4e-51 204.1 122 81.1
Gohir.D04G066500 Gossypium hirsutum HOM05D003187 ORTHO05D003630 6.4e-51 204.1 122 81.1
Gorai.012G075300 Gossypium raimondii HOM05D003187 ORTHO05D003630 6.4e-51 204.1 122 81.1
Thecc.10G027100 Theobroma cacao HOM05D003187 ORTHO05D003630 6.4e-51 204.1 122 81.1
CANSAT80G1383 Cannabis sativa HOM05D003187 ORTHO05D003630 8.4e-51 203.8 122 80.3
Sabra10G0148900 Salix brachista HOM05D003187 ORTHO05D003630 8.4e-51 203.8 119 82.4
Hund05583 Selenicereus undatus HOM05D003187 ORTHO05D003630 8.4e-51 203.8 117 82.9
SGA_v2.0_scaffold62G21340 Striga asiatica HOM05D003187 ORTHO05D003630 1.1e-50 203.4 122 78.7
COL.COLO4_25670 Corchorus olitorius HOM05D003187 ORTHO05D003630 1.4e-50 203.0 122 81.1
Duzib114G0739 Durio zibethinus HOM05D003187 ORTHO05D003630 1.9e-50 202.6 122 80.3
MBI17_g24519_MAGBIO Magnolia biondii HOM05D003187 ORTHO05D003630 1.9e-50 202.6 122 78.7
Cpa.g.sc19.222 Carica papaya HOM05D003187 ORTHO05D003630 3.2e-50 201.8 122 81.1
Potri.010G193400 Populus trichocarpa HOM05D003187 ORTHO05D003630 3.2e-50 201.8 119 82.4
Eucgr.G03026 Eucalyptus grandis HOM05D003187 ORTHO05D003630 4.1e-50 201.4 122 79.5
Manes.07G124700 Manihot esculenta HOM05D003187 ORTHO05D003630 4.1e-50 201.4 122 79.5
Nn2g12076 Nelumbo nucifera HOM05D003187 ORTHO05D003630 4.1e-50 201.4 122 78.7
Ciclev10031157m.g Citrus clementina HOM05D003187 ORTHO05D003630 5.4e-50 201.1 122 80.3
Cc05_g02550 Coffea canephora HOM05D003187 ORTHO05D003630 5.4e-50 201.1 122 77.9
Cc06_g17320 Coffea canephora HOM05D003187 ORTHO05D003630 5.4e-50 201.1 115 82.6
SalBow1G1358 Salvia bowleyana HOM05D003187 ORTHO05D003630 5.4e-50 201.1 122 79.5
Atru.chr12.251 Acer truncatum HOM05D003187 ORTHO05D003630 9.2e-50 200.3 115 85.2
DCAR_011784 Daucus carota HOM05D003187 ORTHO05D003630 9.2e-50 200.3 122 77.9
Hund18445 Selenicereus undatus HOM05D003187 ORTHO05D003630 9.2e-50 200.3 122 78.7
Cc05_g02410 Coffea canephora HOM05D003187 ORTHO05D003630 1.2e-49 199.9 115 81.7
EL10Ac7g17924 Beta vulgaris HOM05D003187 ORTHO05D003630 2.7e-49 198.7 122 78.7
Sc17g0002050 Simmondsia chinensis HOM05D003187 ORTHO05D003630 2.7e-49 198.7 115 83.5
AUR62001143 Chenopodium quinoa HOM05D003187 ORTHO05D003630 1.7e-48 196.1 122 77.9
AUR62016534 Chenopodium quinoa HOM05D003187 ORTHO05D003630 1.7e-48 196.1 122 77.9
Rhsim09G0171800 Rhododendron simsii HOM05D003187 ORTHO05D003630 2.3e-48 195.7 133 72.2
Lj8A73G45 Lonicera japonica HOM05D003187 ORTHO05D003630 3.9e-48 194.9 122 75.4
Haze_17177 Corylus avellana HOM05D003187 ORTHO05D003630 5.1e-48 194.5 157 64.3
CDE04G1847 Ceratophyllum demersum HOM05D003187 ORTHO05D003630 6.6e-48 194.1 122 77.0
CDE12G0549 Ceratophyllum demersum HOM05D003187 ORTHO05D003630 6.6e-48 194.1 122 77.0
Os03g0313600 Oryza sativa ssp. japonica HOM05D003187 ORTHO05D003630 6.6e-48 194.1 119 75.6
THA.LOC104806141 Tarenaya hassleriana HOM05D003187 ORTHO05D003630 6.6e-48 194.1 122 77.9
Lsat_1_v5_gn_7_58981 Lactuca sativa HOM05D003187 ORTHO05D003630 8.6e-48 193.7 122 76.2
BcaC01g00541 Brassica carinata HOM05D003187 ORTHO05D003630 1.1e-47 193.4 115 82.6
BolC3t20388H Brassica oleracea HOM05D003187 ORTHO05D003630 1.1e-47 193.4 115 82.6
A03p51310 Brassica napus HOM05D003187 ORTHO05D003630 1.5e-47 193.0 115 83.5
BraA03t14212Z Brassica rapa HOM05D003187 ORTHO05D003630 1.5e-47 193.0 115 83.5
PGR042G2760 Punica granatum HOM05D003187 ORTHO05D003630 1.5e-47 193.0 115 81.7
CARHR225270 Cardamine hirsuta HOM05D003187 ORTHO05D003630 1.9e-47 192.6 115 82.6
Thhalv10025077m.g Eutrema salsugineum HOM05D003187 ORTHO05D003630 1.9e-47 192.6 115 82.6
Hma1.2p1_0710F.1_g207370 Hydrangea macrophylla HOM05D003187 ORTHO05D003630 1.9e-47 192.6 122 74.6
Sp7g15590 Schrenkiella parvula HOM05D003187 ORTHO05D003630 1.9e-47 192.6 115 83.5
TWI53G1626 Tripterygium wilfordii HOM05D003187 ORTHO05D003630 1.9e-47 192.6 115 80.9
Aa31LG6G1160 Aethionema arabicum HOM05D003187 ORTHO05D003630 2.5e-47 192.2 122 78.7
BcaC06g30583 Brassica carinata HOM05D003187 ORTHO05D003630 2.5e-47 192.2 115 82.6
BcaC09g51513 Brassica carinata HOM05D003187 ORTHO05D003630 2.5e-47 192.2 115 82.6
BcaNung02707 Brassica carinata HOM05D003187 ORTHO05D003630 2.5e-47 192.2 115 82.6
A08p13810 Brassica napus HOM05D003187 ORTHO05D003630 2.5e-47 192.2 115 82.6
C01p12350 Brassica napus HOM05D003187 ORTHO05D003630 2.5e-47 192.2 115 82.6
C03p81220 Brassica napus HOM05D003187 ORTHO05D003630 2.5e-47 192.2 115 81.7
C07p49720 Brassica napus HOM05D003187 ORTHO05D003630 2.5e-47 192.2 115 82.6
BolC1t01210H Brassica oleracea HOM05D003187 ORTHO05D003630 2.5e-47 192.2 115 82.6
BolC7t45473H Brassica oleracea HOM05D003187 ORTHO05D003630 2.5e-47 192.2 115 82.6
BraA08t33360Z Brassica rapa HOM05D003187 ORTHO05D003630 2.5e-47 192.2 115 82.6
Carub.0007s2280 Capsella rubella HOM05D003187 ORTHO05D003630 2.5e-47 192.2 115 81.7
HanXRQChr07g0202751 Helianthus annuus HOM05D003187 ORTHO05D003630 2.5e-47 192.2 122 75.4
HanXRQChr14g0459901 Helianthus annuus HOM05D003187 ORTHO05D003630 3.3e-47 191.8 122 75.4
unitig_27.g25097 Utricularia gibba HOM05D003187 ORTHO05D003630 4.3e-47 191.4 122 75.4
AT4G18440 Arabidopsis thaliana HOM05D003187 ORTHO05D003630 5.6e-47 191.0 115 82.6
AL3G37850 Arabidopsis lyrata HOM05D003187 ORTHO05D003630 7.3e-47 190.7 115 81.7
A01p10400 Brassica napus HOM05D003187 ORTHO05D003630 7.3e-47 190.7 115 81.7
BraA01t00987Z Brassica rapa HOM05D003187 ORTHO05D003630 7.3e-47 190.7 115 81.7
Zm00001eb015040 Zea mays HOM05D003187 ORTHO05D003630 9.6e-47 190.3 119 75.6
Actinidia13914 Actinidia chinensis HOM05D003187 ORTHO05D003630 1.2e-46 189.9 115 79.1
Pp3c9_17690 Physcomitrium patens HOM05D003187 ORTHO05D003630 1.2e-46 189.9 122 74.6
AT1G36280 Arabidopsis thaliana HOM05D003187 ORTHO05D003630 1.6e-46 189.5 115 80.9
Aqoxy6G01396 Aquilegia oxysepala HOM05D003187 ORTHO05D003630 2.1e-46 189.1 122 74.6
Lsat_1_v5_gn_2_122660 Lactuca sativa HOM05D003187 ORTHO05D003630 2.8e-46 188.7 122 74.6
AL7G35850 Arabidopsis lyrata HOM05D003187 ORTHO05D003630 4.7e-46 188.0 115 81.7
FvH4_5g04980 Fragaria vesca HOM05D003187 ORTHO05D003630 4.7e-46 188.0 115 82.6
ECA238G3690 Erigeron canadensis HOM05D003187 ORTHO05D003630 1.1e-45 186.8 115 80.0
ATR0026G045 Amborella trichopoda HOM05D003187 ORTHO05D003630 2.4e-45 185.7 122 71.3
Manes.10G018200 Manihot esculenta HOM05D003187 ORTHO05D003630 6.8e-45 184.1 122 76.2
HPP92_018291 Vanilla planifolia HOM05D003187 ORTHO05D003630 6.8e-45 184.1 119 73.1
AagrBONN_evm.TU.Sc2ySwM_228.2882 Anthoceros agrestis HOM05D003187 ORTHO05D003630 2.0e-44 182.6 122 70.5
CBR_g16842 Chara braunii HOM05D003187 ORTHO05D003630 2.0e-44 182.6 122 69.7
PRCOL_00002332 Prasinoderma coloniale HOM05D003187 ORTHO05D003630 2.0e-44 182.6 117 71.8
Medtr5g081750 Medicago truncatula HOM05D003187 ORTHO05D003630 2.6e-44 182.2 155 61.3
FAN03G0133 Fragaria x ananassa HOM05D003187 ORTHO05D003630 3.4e-44 181.8 115 80.0
Mapoly0031s0040 Marchantia polymorpha HOM05D003187 ORTHO05D003630 1.3e-43 179.9 122 69.7
Cre13.g565450 Chlamydomonas reinhardtii HOM05D003187 ORTHO05D003630 1.7e-43 179.5 122 68.9
MCO12G170 Micromonas commoda HOM05D003187 ORTHO05D003630 2.2e-43 179.1 119 70.6
vmacro10066 Vaccinium macrocarpon HOM05D003187 ORTHO05D003630 1.6e-41 172.9 95 86.3
SHI03522 Sapria himalayana HOM05D003187 ORTHO05D003630 5.1e-40 167.9 122 68.0
CANSAT80G0456 Cannabis sativa HOM05D003187 ORTHO05D003630 1.3e-38 163.3 95 83.2
Nn2g11364 Nelumbo nucifera HOM05D003187 ORTHO05D003630 1.1e-37 160.2 96 81.2
Actinidia00931 Actinidia chinensis HOM05D003187 ORTHO05D003630 9.0e-37 157.1 122 63.9
Psat5g091080 Pisum sativum HOM05D003187 ORTHO05D003630 3.4e-36 155.2 89 83.1
Psat6g139960 Pisum sativum HOM05D003187 ORTHO05D003630 3.4e-36 155.2 89 83.1
SMO356G0706 Selaginella moellendorffii HOM05D003187 ORTHO05D003630 1.1e-34 150.2 122 60.7
Actinidia25354 Actinidia chinensis HOM05D003187 ORTHO05D003630 1.9e-34 149.4 111 69.4
Ca_05654_v3 Cicer arietinum L. HOM05D003187 ORTHO05D003630 7.1e-34 147.5 86 82.6
CAN.G1271.9 Capsicum annuum HOM05D003187 ORTHO05D003630 5.1e-32 141.4 86 79.1
BcaB04g18477 Brassica carinata HOM05D003187 ORTHO05D003630 2.5e-31 139.0 115 64.3
FvH4_7g08523 Fragaria vesca HOM05D003187 ORTHO05D003630 6.2e-30 134.4 79 84.8
FAN10G2756 Fragaria x ananassa HOM05D003187 ORTHO05D003630 3.1e-29 132.1 112 64.3
Nitab4.5_0012646g0020 Nicotiana tabacum HOM05D003187 ORTHO05D003630 1.5e-28 129.8 102 66.7
Nitab4.5_0007356g0030 Nicotiana tabacum HOM05D003187 ORTHO05D003630 5.8e-28 127.9 115 58.3
Cc00_g04440 Coffea canephora HOM05D003187 ORTHO05D003630 1.9e-26 122.9 83 74.7
BcaC03g16804 Brassica carinata HOM05D003187 ORTHO05D003630 9.3e-26 120.6 110 60.9
SEGI_04750 Sequoiadendron giganteum HOM05D003187 ORTHO05D003630 1.6e-25 119.8 85 71.8
RcHm_v2.0_Chr7g0186531 Rosa chinensis HOM05D003187 ORTHO05D003630 1.3e-24 116.7 114 53.5
ECA232G0632 Erigeron canadensis HOM05D003187 ORTHO05D003630 3.0e-24 115.5 71 80.3
HanXRQChr01g0017651 Helianthus annuus HOM05D003187 ORTHO05D003630 2.1e-22 109.4 72 73.6
CSS0022977 Camellia sinensis var. sinensis HOM05D003187 ORTHO05D003630 1.4e-21 106.7 79 67.1
CSS0044344 Camellia sinensis var. sinensis HOM05D003187 ORTHO05D003630 4.0e-21 105.1 79 65.8
RcHm_v2.0_Chr5g0043801 Rosa chinensis HOM05D003187 ORTHO05D003630 1.2e-20 103.6 106 54.7
PSO170G6881 Papaver somniferum HOM05D003187 ORTHO05D003630 1.5e-20 103.2 119 47.9
RcHm_v2.0_Chr5g0043781 Rosa chinensis HOM05D003187 ORTHO05D003630 1.5e-20 103.2 91 62.6
FvH4_5g11350 Fragaria vesca HOM05D003187 ORTHO05D003630 1.9e-18 96.3 114 45.6
FAN18G2583 Fragaria x ananassa HOM05D003187 ORTHO05D003630 1.9e-18 96.3 114 45.6
FAN18G3798 Fragaria x ananassa HOM05D003187 ORTHO05D003630 1.9e-18 96.3 114 45.6
ATR0686G248 Amborella trichopoda HOM05D003187 ORTHO05D003630 5.5e-18 94.7 86 57.0
FAN08G1218 Fragaria x ananassa HOM05D003187 ORTHO05D003630 7.9e-17 90.9 114 44.7
Zm00001eb297360 Zea mays HOM05D003187 ORTHO05D003630 5.1e-16 88.2 74 59.5
Zm00001eb319880 Zea mays HOM05D003187 ORTHO05D003630 1.3e-14 83.6 72 58.3
Ah.08g214730 Amaranthus hybridus HOM05D003187 ORTHO05D003630 4.8e-14 81.6 122 40.2
Potri.008G063800 Populus trichocarpa HOM05D003256 ORTHO05D005659 5.9e-12 74.7 49 73.5
SEGI_41372 Sequoiadendron giganteum HOM05D003187 ORTHO05D003630 7.6e-12 74.3 45 71.1
BolC2t10727H Brassica oleracea HOM05D003187 ORTHO05D003630 1.4e-10 70.1 103 43.7
C02p46750 Brassica napus HOM05D003187 ORTHO05D003630 3.2e-10 68.9 96 43.8
Glyma.20G147852 Glycine max HOM05D003187 ORTHO05D003630 7.2e-10 67.8 50 64.0
Psat6g019240 Pisum sativum HOM05D004506 ORTHO05D000469 6.1e-09 64.7 47 66.0
AagrBONN_evm.TU.Sc2ySwM_228.636 Anthoceros agrestis HOM05D003187 ORTHO05D003630 1.0e-08 63.9 34 82.4
HanXRQChr11g0322721 Helianthus annuus HOM05D003187 ORTHO05D003630 6.7e-08 61.2 37 70.3
CARHR224760 Cardamine hirsuta HOM05D003187 ORTHO05D003630 1.5e-07 60.1 73 47.9
Zm00001eb113520 Zea mays HOM05D003187 ORTHO05D003630 1.3e-06 57.0 57 52.6
Cre13.g565321 Chlamydomonas reinhardtii HOM05D003187 ORTHO05D003630 3.7e-06 55.5 36 69.4


User provided reference genes

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