Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g07910 Fragaria vesca HOM05D007785 ORTHO05D008997 2.7e-39 164.9 81 100.0
FAN06G1471 Fragaria x ananassa HOM05D007785 ORTHO05D008997 2.7e-39 164.9 81 100.0
FAN10G3075 Fragaria x ananassa HOM05D007785 ORTHO05D008997 2.7e-39 164.9 81 100.0
FAN01G0084 Fragaria x ananassa HOM05D007785 ORTHO05D008997 4.2e-37 157.5 81 96.3
FAN03G1138 Fragaria x ananassa HOM05D007785 ORTHO05D008997 7.2e-37 156.8 81 96.3
RcHm_v2.0_Chr1g0341401 Rosa chinensis HOM05D007785 ORTHO05D008997 1.3e-33 146.0 81 91.4
MD02G1229100 Malus domestica HOM05D007785 ORTHO05D008997 3.0e-22 108.2 81 71.6
MD07G1083000 Malus domestica HOM05D007785 ORTHO05D008997 1.9e-21 105.5 81 71.6
QL04p025073 Quercus lobata HOM05D007785 ORTHO05D008997 4.4e-18 94.4 86 59.3
CiPaw.13G020000 Carya illinoinensis HOM05D007785 ORTHO05D008997 1.9e-16 89.0 85 58.8
Prupe.2G109900 Prunus persica HOM05D007785 ORTHO05D008997 2.0e-15 85.5 90 56.7
Atru.chr5.15 Acer truncatum HOM05D007785 ORTHO05D008997 1.7e-14 82.4 85 52.9
Hma1.2p1_0021F.1_g014470 Hydrangea macrophylla HOM05D007785 ORTHO05D008997 3.0e-14 81.6 87 55.2
CSS0006779 Camellia sinensis var. sinensis HOM05D007785 ORTHO05D008997 1.1e-13 79.7 82 51.2
Peaxi162Scf00901g00032 Petunia axillaris HOM05D007785 ORTHO05D008997 5.6e-13 77.4 83 51.8
Peaxi162Scf01144g00004 Petunia axillaris HOM05D007785 ORTHO05D008997 5.6e-13 77.4 83 51.8
Haze_02930 Corylus avellana HOM05D007785 ORTHO05D008997 9.5e-13 76.6 78 59.0
Hma1.2p1_0601F.1_g187290 Hydrangea macrophylla HOM05D007785 ORTHO05D008997 2.1e-12 75.5 81 53.1
Nitab4.5_0001476g0130 Nicotiana tabacum HOM05D007785 ORTHO05D008997 2.8e-12 75.1 85 51.8
Sed0022240 Sechium edule HOM05D007785 ORTHO05D008997 2.8e-12 75.1 94 53.2
Nn1g00585 Nelumbo nucifera HOM05D007785 ORTHO05D008997 1.1e-11 73.2 85 48.2
Nitab4.5_0003887g0040 Nicotiana tabacum HOM05D007785 ORTHO05D008997 1.1e-11 73.2 71 56.3
Actinidia05806 Actinidia chinensis HOM05D007785 ORTHO05D008997 1.4e-11 72.8 83 48.2
Prupe.2G110100 Prunus persica HOM05D007785 ORTHO05D008997 1.4e-11 72.8 73 60.3
MSTRG.17094 Avicennia marina HOM05D007785 ORTHO05D008997 1.8e-11 72.4 81 45.7
Dinv43998 Davidia involucrata HOM05D007785 ORTHO05D008997 1.8e-11 72.4 66 57.6
Cc02_g26020 Coffea canephora HOM05D007785 ORTHO05D008997 4.0e-11 71.2 81 49.4
Gohir.D13G012700 Gossypium hirsutum HOM05D007785 ORTHO05D008997 6.8e-11 70.5 80 52.5
ClCG05G002700 Citrullus lanatus HOM05D007785 ORTHO05D008997 1.2e-10 69.7 96 50.0
Gohir.A13G011800 Gossypium hirsutum HOM05D007785 ORTHO05D008997 1.2e-10 69.7 80 52.5
Gorai.013G013800 Gossypium raimondii HOM05D007785 ORTHO05D008997 1.2e-10 69.7 80 52.5
Solyc01g080890.2 Solanum lycopersicum HOM05D007785 ORTHO05D008997 1.2e-10 69.7 85 51.8
Sopen01g032480 Solanum pennellii HOM05D007785 ORTHO05D008997 2.0e-10 68.9 85 52.9
TAR374G0344 Trochodendron aralioides HOM05D007785 ORTHO05D008997 2.0e-10 68.9 77 48.1
Migut.B01462 Erythranthe guttata HOM05D007785 ORTHO05D008997 2.6e-10 68.6 81 45.7
Nitab4.5_0006705g0010 Nicotiana tabacum HOM05D007785 ORTHO05D008997 5.8e-10 67.4 71 59.2
Nitab4.5_0000166g0090 Nicotiana tabacum HOM05D007785 ORTHO05D008997 7.5e-10 67.0 71 57.7
TAR636G3686 Trochodendron aralioides HOM05D007785 ORTHO05D008997 7.5e-10 67.0 85 43.5
TAR375G1071 Trochodendron aralioides HOM05D007785 ORTHO05D008997 2.9e-09 65.1 71 50.7
Sed0016926 Sechium edule HOM05D007785 ORTHO05D008997 3.7e-09 64.7 96 47.9
PGSC0003DMG400001700 Solanum tuberosum HOM05D007785 ORTHO05D008997 3.7e-09 64.7 85 50.6
CsaV3_3G010180 Cucumis sativus L. HOM05D007785 ORTHO05D008997 1.1e-08 63.2 96 45.8
SalBow4G1855 Salvia bowleyana HOM05D007785 ORTHO05D008997 1.1e-08 63.2 79 46.8
CSS0013282 Camellia sinensis var. sinensis HOM05D007785 ORTHO05D008997 1.4e-08 62.8 81 48.1
MELO3C006238.2 Cucumis melo HOM05D007785 ORTHO05D008997 1.4e-08 62.8 88 46.6
Nn6g33639 Nelumbo nucifera HOM05D007785 ORTHO05D008997 4.1e-08 61.2 71 47.9
SalBow5G3019 Salvia bowleyana HOM05D007785 ORTHO05D008997 4.1e-08 61.2 81 45.7
Ciclev10023085m.g Citrus clementina HOM05D007785 ORTHO05D008997 7.1e-08 60.5 71 50.7
Manes.15G169900 Manihot esculenta HOM05D007785 ORTHO05D008997 7.1e-08 60.5 76 48.7
Oeu021958.1 Olea europaea HOM05D007785 ORTHO05D008997 7.1e-08 60.5 80 43.8
Lalb_Chr09g0329531 Lupinus albus HOM05D007785 ORTHO05D008997 1.2e-07 59.7 70 48.6
ECA234G3743 Erigeron canadensis HOM05D007785 ORTHO05D008997 6.0e-07 57.4 72 45.8
Rhsim01G0145700 Rhododendron simsii HOM05D007785 ORTHO05D008997 6.0e-07 57.4 76 48.7
Cc08_g02350 Coffea canephora HOM05D007785 ORTHO05D008997 1.0e-06 56.6 72 51.4
vmacro21104 Vaccinium macrocarpon HOM05D008336 ORTHO05D008997 1.7e-06 55.8 96 38.5
Aqoxy3G02467 Aquilegia oxysepala HOM05D007785 ORTHO05D008997 2.3e-06 55.5 84 46.4
Migut.N01702 Erythranthe guttata HOM05D007785 ORTHO05D008997 3.9e-06 54.7 82 40.2
Lalb_Chr05g0214041 Lupinus albus HOM05D007785 ORTHO05D008997 3.9e-06 54.7 71 56.3


User provided reference genes

Program Settings