Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g07110 Fragaria vesca HOM05D007511 ORTHO05D003753 1.1e-96 356.7 189 100.0
FAN06G3938 Fragaria x ananassa HOM05D007511 ORTHO05D003753 2.7e-95 352.1 189 98.9
FAN03G1709 Fragaria x ananassa HOM05D007511 ORTHO05D003753 7.5e-93 344.0 189 93.1
FAN01G1810 Fragaria x ananassa HOM05D007511 ORTHO05D003753 7.0e-91 337.4 189 91.5
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 3.8e-89 331.6 189 91.0
RcHm_v2.0_Chr1g0337051 Rosa chinensis HOM05D007511 ORTHO05D003753 3.3e-72 275.4 189 78.8
MD07G1077000 Malus domestica HOM05D007511 ORTHO05D003753 9.9e-45 184.1 190 56.8
Prupe.2G098000 Prunus persica HOM05D007511 ORTHO05D003753 2.2e-44 183.0 190 57.9
MD02G1239600 Malus domestica HOM05D007511 ORTHO05D003753 3.2e-43 179.1 191 54.5
CiPaw.02G046500 Carya illinoinensis HOM05D007511 ORTHO05D003753 6.7e-25 118.2 190 40.0
Duzib177G0499 Durio zibethinus HOM05D007511 ORTHO05D003753 2.0e-21 106.7 189 36.5
TWI60G1247 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 3.8e-20 102.4 194 34.5
TAR629G3237 Trochodendron aralioides HOM05D007511 ORTHO05D003753 1.4e-19 100.5 156 39.1
Cpa.g.sc73.86 Carica papaya HOM05D007511 ORTHO05D003753 4.2e-19 99.0 203 36.0
Duzib128G1432 Durio zibethinus HOM05D007511 ORTHO05D003753 4.2e-19 99.0 199 34.7
Sed0019168 Sechium edule HOM05D007511 ORTHO05D003753 9.3e-19 97.8 187 33.7
TPR.G24583 Trifolium pratense HOM05D007511 ORTHO05D003753 2.7e-18 96.3 144 39.6
TWI34G0987 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 2.7e-18 96.3 198 35.4
Potri.019G043701 Populus trichocarpa HOM05D007511 ORTHO05D003753 7.9e-18 94.7 193 34.7
Sabra19G0054300 Salix brachista HOM05D007511 ORTHO05D003753 5.1e-17 92.0 170 37.6
Manes.08G158000 Manihot esculenta HOM05D007511 ORTHO05D003753 1.1e-16 90.9 151 37.7
TAR381G0240 Trochodendron aralioides HOM05D001418 ORTHO05D004504 1.5e-16 90.5 191 37.2
Gohir.D11G235550 Gossypium hirsutum HOM05D007511 ORTHO05D003753 1.9e-16 90.1 145 35.2
Nn3g19224 Nelumbo nucifera HOM05D007511 ORTHO05D003753 2.5e-16 89.7 136 41.9
Atru.chr2.1724 Acer truncatum HOM05D007511 ORTHO05D003753 3.3e-16 89.4 184 34.8
Gohir.A11G221900 Gossypium hirsutum HOM05D007511 ORTHO05D003753 4.3e-16 89.0 136 36.8
Gorai.007G248300 Gossypium raimondii HOM05D007511 ORTHO05D003753 1.6e-15 87.0 145 34.5
CsaV3_2G011030 Cucumis sativus L. HOM05D007511 ORTHO05D003753 2.8e-15 86.3 188 36.2
Ca_23172_v3 Cicer arietinum L. HOM05D007511 ORTHO05D003753 3.7e-15 85.9 169 37.3
PSO063G5504 Papaver somniferum HOM05D007511 ORTHO05D003753 3.7e-15 85.9 208 33.2
Thecc.05G230200 Theobroma cacao HOM05D007511 ORTHO05D003753 3.7e-15 85.9 175 36.6
Eucgr.D00980 Eucalyptus grandis HOM05D007511 ORTHO05D003753 6.2e-15 85.1 190 33.2
Medtr8g011160 Medicago truncatula HOM05D007511 ORTHO05D003753 1.4e-14 84.0 144 36.1
Cfa000931 Carpinus fangiana HOM05D007511 ORTHO05D003753 1.8e-14 83.6 68 54.4
PSO782G3115 Papaver somniferum HOM05D007511 ORTHO05D003753 3.1e-14 82.8 206 33.5
Manes.12G158100 Manihot esculenta HOM05D001418 ORTHO05D003753 5.3e-14 82.0 181 32.6
TAR628G0376 Trochodendron aralioides HOM05D001418 ORTHO05D003753 1.2e-13 80.9 187 32.1
Psat4g207240 Pisum sativum HOM05D007511 ORTHO05D003753 3.4e-13 79.3 141 38.3
Nn1g09148 Nelumbo nucifera HOM05D007511 ORTHO05D003753 5.8e-13 78.6 67 52.2
Rhsim01G0134200 Rhododendron simsii HOM05D007511 ORTHO05D003753 5.8e-13 78.6 187 33.2
Ciclev10033674m.g Citrus clementina HOM05D007511 ORTHO05D003753 7.6e-13 78.2 151 33.1
TAR625G0656 Trochodendron aralioides HOM05D001418 ORTHO05D003753 7.6e-13 78.2 138 32.6
CANSAT35G2046 Cannabis sativa HOM05D007511 ORTHO05D003753 1.7e-12 77.0 67 55.2
Rhsim01G0134700 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.7e-12 77.0 187 32.6
Lj3g0008746 Lotus japonicus HOM05D007511 ORTHO05D003753 2.9e-12 76.3 190 30.0
PGR004G1271 Punica granatum HOM05D007511 ORTHO05D003753 3.8e-12 75.9 137 40.9
Sp6g26630 Schrenkiella parvula HOM05D007511 ORTHO05D003753 4.9e-12 75.5 203 31.5
Glyma.16G082300 Glycine max HOM05D007511 ORTHO05D003753 1.4e-11 73.9 143 33.6
Nn1g08946 Nelumbo nucifera HOM05D001418 ORTHO05D003753 1.4e-11 73.9 195 32.3
Psat0s409g0080 Pisum sativum HOM05D007511 ORTHO05D003753 1.4e-11 73.9 130 31.5
SGA_v2.0_scaffold5G03086 Striga asiatica HOM05D007511 ORTHO05D003753 1.4e-11 73.9 79 43.0
TWI79G1507 Tripterygium wilfordii HOM05D001418 ORTHO05D003753 1.4e-11 73.9 187 31.6
Thhalv10015688m.g Eutrema salsugineum HOM05D007511 ORTHO05D003753 2.5e-11 73.2 152 34.2
Thecc.01G136200 Theobroma cacao HOM05D001418 ORTHO05D003753 2.5e-11 73.2 187 29.4
vmacro13587 Vaccinium macrocarpon HOM05D007511 ORTHO05D003753 2.5e-11 73.2 147 36.1
HPP92_025164 Vanilla planifolia HOM05D001418 ORTHO05D003753 4.2e-11 72.4 69 47.8
HPP92_025177 Vanilla planifolia HOM05D001418 ORTHO05D003753 4.2e-11 72.4 69 47.8
HanXRQChr04g0119711 Helianthus annuus HOM05D007511 ORTHO05D003753 5.5e-11 72.0 149 30.9
MBI06_g35216_MAGBIO Magnolia biondii HOM05D007511 ORTHO05D003753 5.5e-11 72.0 65 49.2
Oeu032775.1 Olea europaea HOM05D007511 ORTHO05D003753 7.1e-11 71.6 67 46.3
Hma1.2p1_0915F.1_g236420 Hydrangea macrophylla HOM05D007511 ORTHO05D003753 9.3e-11 71.2 189 30.2
Oeu024951.1 Olea europaea HOM05D007511 ORTHO05D003753 9.3e-11 71.2 67 46.3
Aa31LG11G12060 Aethionema arabicum HOM05D007511 ORTHO05D003753 1.2e-10 70.9 154 35.1
Ah.02g114820 Amaranthus hybridus HOM05D001418 ORTHO05D003753 1.2e-10 70.9 179 30.7
Lalb_Chr07g0194541 Lupinus albus HOM05D007511 ORTHO05D003753 1.2e-10 70.9 145 34.5
BcaB08g36759 Brassica carinata HOM05D007511 ORTHO05D003753 2.1e-10 70.1 151 30.5
Rhsim07G0046200 Rhododendron simsii HOM05D007511 ORTHO05D003753 2.1e-10 70.1 138 37.7
Peaxi162Scf01343g00114 Petunia axillaris HOM05D007511 ORTHO05D003753 2.7e-10 69.7 166 29.5
Lsat_1_v5_gn_7_35641 Lactuca sativa HOM05D007511 ORTHO05D003753 3.5e-10 69.3 159 30.8
HPP92_004456 Vanilla planifolia HOM05D001418 ORTHO05D003753 3.5e-10 69.3 185 30.8
Carub.0006s1583 Capsella rubella HOM05D007511 ORTHO05D003753 6.1e-10 68.6 145 33.1
Glyma.03G092200 Glycine max HOM05D007511 ORTHO05D003753 6.1e-10 68.6 142 34.5
Solyc10g024480.1 Solanum lycopersicum HOM05D007511 ORTHO05D003753 7.9e-10 68.2 68 44.1
Sopen10g009620 Solanum pennellii HOM05D007511 ORTHO05D025904 1.0e-09 67.8 68 44.1
PGSC0003DMG400043768 Solanum tuberosum HOM05D007511 ORTHO05D003753 1.0e-09 67.8 68 47.1
Nitab4.5_0004800g0110 Nicotiana tabacum HOM05D000001 ORTHO05D011953 1.8e-09 67.0 140 32.9
THA.LOC104802898 Tarenaya hassleriana HOM05D007511 ORTHO05D003753 2.3e-09 66.6 212 29.2
AT5G17590 Arabidopsis thaliana HOM05D007511 ORTHO05D003753 3.9e-09 65.9 143 32.2
BolC9t58796H Brassica oleracea HOM05D007511 ORTHO05D003753 5.1e-09 65.5 197 26.9
AUR62034848 Chenopodium quinoa HOM05D001418 ORTHO05D003753 5.1e-09 65.5 177 26.6
QL04p052194 Quercus lobata HOM05D007511 ORTHO05D003753 5.1e-09 65.5 148 33.8
CDE02G0326 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 6.7e-09 65.1 66 47.0
Migut.B01440 Erythranthe guttata HOM05D007511 ORTHO05D003753 6.7e-09 65.1 66 42.4
Prupe.4G274100 Prunus persica HOM05D001418 ORTHO05D003753 8.7e-09 64.7 187 30.5
Sabra07G0084500 Salix brachista HOM05D001418 ORTHO05D003753 1.1e-08 64.3 60 43.3
Zm00001eb408450 Zea mays HOM05D001418 ORTHO05D003753 1.1e-08 64.3 187 31.0
CARHR195590 Cardamine hirsuta HOM05D007511 ORTHO05D003753 1.5e-08 63.9 140 30.0
Ah.06g190930 Amaranthus hybridus HOM05D001418 ORTHO05D003753 1.9e-08 63.5 204 29.4
Sopen01g032800 Solanum pennellii HOM05D007511 ORTHO05D003753 1.9e-08 63.5 138 33.3
BcaC04g18776 Brassica carinata HOM05D007511 ORTHO05D003753 2.5e-08 63.2 197 26.4
C09p59570 Brassica napus HOM05D007511 ORTHO05D003753 2.5e-08 63.2 197 26.4
Os11g0195700 Oryza sativa ssp. japonica HOM05D001418 ORTHO05D003753 2.5e-08 63.2 86 39.5
AL6G28680 Arabidopsis lyrata HOM05D007511 ORTHO05D003753 3.3e-08 62.8 147 34.0
Phvul.010G032800 Phaseolus vulgaris HOM05D007511 ORTHO05D003753 4.3e-08 62.4 68 44.1
Sc16g0009500 Simmondsia chinensis HOM05D001418 ORTHO05D003753 4.3e-08 62.4 80 37.5
BraA10t44242Z Brassica rapa HOM05D007511 ORTHO05D003753 5.7e-08 62.0 144 29.9
Zm00001eb112650 Zea mays HOM05D001418 ORTHO05D003753 5.7e-08 62.0 55 49.1
BcaC03g13529 Brassica carinata HOM05D007511 ORTHO05D003753 7.4e-08 61.6 141 34.0
C02p09200 Brassica napus HOM05D007511 ORTHO05D003753 7.4e-08 61.6 149 32.2
BolC2t06828H Brassica oleracea HOM05D007511 ORTHO05D003753 7.4e-08 61.6 141 34.0
CSS0038510 Camellia sinensis var. sinensis HOM05D007511 ORTHO05D003753 7.4e-08 61.6 67 41.8
Cpa.g.sc1441.4 Carica papaya HOM05D001418 ORTHO05D003753 9.7e-08 61.2 192 31.2
Sabra05G0054800 Salix brachista HOM05D001418 ORTHO05D003753 9.7e-08 61.2 62 38.7
CiPaw.04G080200 Carya illinoinensis HOM05D001418 ORTHO05D003753 1.6e-07 60.5 196 31.1
Zm00001eb202060 Zea mays HOM05D001418 ORTHO05D003753 1.6e-07 60.5 57 49.1
Atru.chr4.944 Acer truncatum HOM05D001418 ORTHO05D003753 2.2e-07 60.1 64 43.8
A02p04350 Brassica napus HOM05D007511 ORTHO05D003753 2.2e-07 60.1 149 31.5
A10p21820 Brassica napus HOM05D007511 ORTHO05D003753 2.2e-07 60.1 144 29.2
BraA02t05399Z Brassica rapa HOM05D007511 ORTHO05D003753 2.2e-07 60.1 149 31.5
AUR62006850 Chenopodium quinoa HOM05D001418 ORTHO05D003753 2.2e-07 60.1 209 26.8
AUR62029588 Chenopodium quinoa HOM05D001418 ORTHO05D003753 2.2e-07 60.1 181 27.6
CDE08G1405 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 2.8e-07 59.7 65 44.6
Sc06g0005400 Simmondsia chinensis HOM05D001418 ORTHO05D003753 2.8e-07 59.7 64 39.1
Medtr8g094040 Medicago truncatula HOM05D001418 ORTHO05D003753 3.7e-07 59.3 62 40.3
Eucgr.H05149 Eucalyptus grandis HOM05D001418 ORTHO05D003753 4.8e-07 58.9 187 31.0
Phvul.002G274200 Phaseolus vulgaris HOM05D001418 ORTHO05D003753 4.8e-07 58.9 76 43.4
QL10p041669 Quercus lobata HOM05D001418 ORTHO05D003753 6.3e-07 58.5 194 28.9
Duzib264G0973 Durio zibethinus HOM05D001418 ORTHO05D003753 8.2e-07 58.2 183 27.9
Aqoxy5G00551 Aquilegia oxysepala HOM05D007511 ORTHO05D003753 1.1e-06 57.8 189 27.5
AUR62000505 Chenopodium quinoa HOM05D001418 ORTHO05D003753 1.4e-06 57.4 208 26.4
Potri.005G066500 Populus trichocarpa HOM05D001418 ORTHO05D003753 1.4e-06 57.4 179 28.5
Ciclev10003211m.g Citrus clementina HOM05D001418 ORTHO05D003753 1.8e-06 57.0 65 38.5
Glyma.06G155400 Glycine max HOM05D001418 ORTHO05D003753 2.4e-06 56.6 60 40.0
Lj4g0007966 Lotus japonicus HOM05D001418 ORTHO05D003753 2.4e-06 56.6 56 42.9
TPR.G37392 Trifolium pratense HOM05D001418 ORTHO05D003753 2.4e-06 56.6 125 36.0
CANSAT01G1075 Cannabis sativa HOM05D001418 ORTHO05D003753 3.1e-06 56.2 64 40.6
Hma1.2p1_0353F.1_g133330 Hydrangea macrophylla HOM05D007511 ORTHO05D003753 4.1e-06 55.8 67 34.3
MD00G1091900 Malus domestica HOM05D001418 ORTHO05D003753 5.3e-06 55.5 179 30.2
Haze_25311 Corylus avellana HOM05D001418 ORTHO05D003753 6.9e-06 55.1 60 41.7
Psat7g044600 Pisum sativum HOM05D001418 ORTHO05D003753 6.9e-06 55.1 56 41.1
QL10p041674 Quercus lobata HOM05D001418 ORTHO05D003753 6.9e-06 55.1 62 38.7
QL10p041864 Quercus lobata HOM05D001418 ORTHO05D003753 6.9e-06 55.1 62 38.7
QL10p041870 Quercus lobata HOM05D001418 ORTHO05D003753 6.9e-06 55.1 195 28.7
Cfa021634 Carpinus fangiana HOM05D001418 ORTHO05D003753 9.0e-06 54.7 60 41.7
Cfa021635 Carpinus fangiana HOM05D001418 ORTHO05D003753 9.0e-06 54.7 60 41.7
CiPaw.03G118600 Carya illinoinensis HOM05D001418 ORTHO05D003753 9.0e-06 54.7 186 31.2
Phvul.009G155100 Phaseolus vulgaris HOM05D001418 ORTHO05D003753 9.0e-06 54.7 72 31.9
Sed0024034 Sechium edule HOM05D001418 ORTHO05D003753 9.0e-06 54.7 60 43.3


User provided reference genes

Program Settings