Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 8.5e-171 603.6 306 100.0
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 4.3e-167 591.3 307 97.4
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 3.1e-165 585.1 310 96.8
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.6e-159 565.5 323 91.3
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 5.9e-156 554.3 312 89.7
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 2.6e-127 459.1 322 74.2
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 3.4e-127 458.8 323 74.9
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 3.5e-108 395.6 316 65.5
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 4.6e-108 395.2 320 63.1
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 1.3e-107 393.7 320 62.2
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 1.1e-106 390.6 320 65.0
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 1.5e-106 390.2 267 70.8
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 3.3e-106 389.0 324 62.3
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 1.6e-105 386.7 271 72.7
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 4.7e-105 385.2 316 66.1
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 4.7e-105 385.2 316 66.1
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 4.0e-104 382.1 271 68.3
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 1.2e-103 380.6 266 71.1
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 3.4e-103 379.0 324 61.4
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 1.7e-102 376.7 291 68.0
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 6.4e-102 374.8 275 68.7
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 9.2e-101 370.9 305 64.3
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 1.6e-100 370.2 274 69.3
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 7.8e-100 367.9 321 61.4
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 1.3e-99 367.1 269 69.1
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 3.9e-99 365.5 314 61.8
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 5.1e-99 365.2 303 63.7
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 1.5e-98 363.6 306 63.7
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 4.3e-98 362.1 308 62.0
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 4.3e-98 362.1 293 64.8
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 5.6e-98 361.7 314 59.6
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 7.3e-98 361.3 305 60.7
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 9.5e-98 360.9 337 60.5
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 4.7e-97 358.6 314 60.8
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 8.1e-97 357.8 269 64.7
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 8.1e-97 357.8 302 61.3
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 1.1e-96 357.5 278 61.9
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 1.8e-96 356.7 315 58.1
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 1.8e-96 356.7 295 60.3
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 1.8e-96 356.7 301 59.8
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 2.4e-96 356.3 298 61.4
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 3.1e-96 355.9 269 64.3
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 3.1e-96 355.9 306 60.1
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 4.0e-96 355.5 279 62.0
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 4.0e-96 355.5 298 61.1
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 5.2e-96 355.1 305 60.7
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 6.8e-96 354.8 329 58.1
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 1.2e-95 354.0 271 63.5
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 3.4e-95 352.4 312 60.3
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 3.4e-95 352.4 298 60.1
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 7.6e-95 351.3 295 61.4
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 9.9e-95 350.9 300 60.7
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 9.9e-95 350.9 287 64.8
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 1.7e-94 350.1 297 62.6
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 3.8e-94 349.0 324 57.1
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 4.9e-94 348.6 273 63.7
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 1.1e-93 347.4 266 66.5
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 1.4e-93 347.1 283 60.8
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 3.2e-93 345.9 286 61.5
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 4.2e-93 345.5 305 58.0
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 5.4e-93 345.1 284 62.3
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 2.7e-92 342.8 286 59.8
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 7.8e-92 341.3 294 60.5
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 5.1e-91 338.6 295 59.7
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 4.3e-90 335.5 269 61.7
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 2.1e-89 333.2 299 57.2
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 4.7e-89 332.0 277 58.8
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 6.2e-89 331.6 283 60.1
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 8.1e-89 331.3 304 56.2
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 8.1e-89 331.3 307 55.0
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 1.8e-88 330.1 264 63.6
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 1.8e-88 330.1 264 63.6
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 1.8e-88 330.1 277 58.1
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 3.1e-88 329.3 309 54.4
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 9.0e-88 327.8 289 58.5
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 2.0e-87 326.6 303 56.8
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 7.6e-87 324.7 315 56.2
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 2.9e-86 322.8 315 56.5
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 6.4e-86 321.6 281 59.4
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 8.4e-86 321.2 278 57.9
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 4.2e-85 318.9 309 53.4
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 9.3e-85 317.8 304 54.3
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 9.3e-85 317.8 302 57.3
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 3.5e-84 315.8 268 60.1
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 4.6e-84 315.5 322 54.3
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 1.0e-83 314.3 267 59.9
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 1.0e-83 314.3 301 54.2
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 1.0e-83 314.3 321 53.0
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 3.9e-83 312.4 325 53.5
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 8.7e-83 311.2 281 56.9
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 1.9e-82 310.1 268 59.0
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.5e-82 309.7 287 57.1
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 5.6e-82 308.5 271 57.2
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 1.3e-81 307.4 293 52.6
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 1.6e-81 307.0 280 57.5
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 3.6e-81 305.8 271 57.9
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 9.0e-80 301.2 322 52.5
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 1.5e-79 300.4 228 71.1
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 9.9e-79 297.7 279 54.1
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 1.7e-78 297.0 275 57.1
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 4.9e-78 295.4 303 50.5
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 1.2e-76 290.8 272 56.6
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 4.6e-76 288.9 298 50.7
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 7.9e-76 288.1 302 51.3
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 7.9e-76 288.1 267 55.4
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 5.1e-75 285.4 292 50.3
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 2.5e-74 283.1 306 50.3
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 3.3e-74 282.7 283 49.8
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 4.3e-74 282.3 202 70.3
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 4.3e-74 282.3 202 70.3
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 7.4e-74 281.6 304 49.3
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.6e-73 280.4 315 47.9
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 2.4e-72 276.6 266 52.3
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 4.0e-72 275.8 282 50.0
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 1.0e-70 271.2 204 62.3
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.9e-69 266.9 289 48.1
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 1.0e-67 261.2 272 51.1
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 3.0e-67 259.6 197 66.0
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 3.9e-67 259.2 283 45.9
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.2e-63 247.7 239 50.2
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.2e-63 247.7 251 49.4
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 6.5e-62 241.9 283 45.2
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 1.1e-61 241.1 303 46.2
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 1.4e-61 240.7 265 48.3
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 2.3e-59 233.4 242 49.6
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 7.7e-55 218.4 214 57.9
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 5.0e-54 215.7 286 42.3
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 1.4e-53 214.2 176 59.7
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.0e-51 208.0 172 61.6
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 3.9e-51 206.1 265 41.1
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 6.3e-49 198.7 271 40.6
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 4.1e-48 196.1 293 40.3
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 6.9e-48 195.3 293 38.9
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 3.4e-47 193.0 260 43.8
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 4.2e-45 186.0 262 38.5
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 3.0e-43 179.9 272 37.1
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.4e-32 144.4 206 40.3
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 2.5e-29 133.7 98 71.4
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 4.1e-24 116.3 120 45.0
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 2.2e-22 110.5 208 34.1
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 8.5e-22 108.6 97 62.9
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 8.5e-22 108.6 97 62.9
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 1.6e-20 104.4 100 45.0
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 4.7e-20 102.8 132 46.2
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 1.8e-16 90.9 77 55.8
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 1.2e-15 88.2 80 60.0
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 4.7e-12 76.3 193 30.1
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 1.2e-10 71.6 169 29.0
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 2.9e-09 67.0 283 24.4


User provided reference genes

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